Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO147G0113 Selaginella moellendorffii HOM05D001249 ORTHO05D003440 2.3e-151 538.9 270 100.0
SMO174G0085 Selaginella moellendorffii HOM05D001249 ORTHO05D003440 1.1e-25 121.3 267 30.7
Medtr5g088850 Medicago truncatula HOM05D001249 ORTHO05D003440 6.2e-24 115.5 270 28.9
Lju470C1T4 Lonicera japonica HOM05D001249 ORTHO05D003440 1.1e-23 114.8 252 29.8
ATR0225G022 Amborella trichopoda HOM05D001249 ORTHO05D003440 1.8e-23 114.0 252 29.8
ClCG06G010080 Citrullus lanatus HOM05D001249 ORTHO05D003440 2.3e-23 113.6 252 29.4
CsaV3_2G011930 Cucumis sativus L. HOM05D001249 ORTHO05D003440 3.1e-23 113.2 252 28.6
Medtr3g045190 Medicago truncatula HOM05D001249 ORTHO05D003440 4.0e-23 112.8 252 29.4
MELO3C020416.2 Cucumis melo HOM05D001249 ORTHO05D003440 5.2e-23 112.5 252 28.6
THA.LOC104804361 Tarenaya hassleriana HOM05D001249 ORTHO05D003440 6.8e-23 112.1 252 30.2
TPR.G16415 Trifolium pratense HOM05D001249 ORTHO05D003440 6.8e-23 112.1 270 27.8
BolC3t15287H Brassica oleracea HOM05D001249 ORTHO05D003440 1.2e-22 111.3 267 27.7
TPR.G11914 Trifolium pratense HOM05D001249 ORTHO05D003440 1.5e-22 110.9 252 29.8
VMungo0647G1653 Vigna mungo HOM05D001249 ORTHO05D003440 1.5e-22 110.9 249 27.7
GSVIVG01038264001 Vitis vinifera HOM05D001249 ORTHO05D003440 3.4e-22 109.8 252 28.6
arahy.Tifrunner.gnm1.ann1.4U54KW Arachis hypogaea HOM05D001249 ORTHO05D003440 4.4e-22 109.4 267 27.0
arahy.Tifrunner.gnm1.ann1.GD18YF Arachis hypogaea HOM05D001249 ORTHO05D003440 4.4e-22 109.4 267 27.0
Eucgr.H00245 Eucalyptus grandis HOM05D001249 ORTHO05D003440 4.4e-22 109.4 252 29.0
LjContig00564g0000582 Lotus japonicus HOM05D001249 ORTHO05D003440 4.4e-22 109.4 252 29.0
Psat2g021400 Pisum sativum HOM05D001249 ORTHO05D003440 4.4e-22 109.4 268 26.1
Sed0022992 Sechium edule HOM05D001249 ORTHO05D003440 4.4e-22 109.4 249 26.9
SMO367G0480 Selaginella moellendorffii HOM05D001249 ORTHO05D003440 4.4e-22 109.4 249 27.7
C03p29400 Brassica napus HOM05D001249 ORTHO05D003440 5.8e-22 109.0 249 28.1
A03p24660 Brassica napus HOM05D001249 ORTHO05D003440 7.5e-22 108.6 249 27.7
BraA03t11672Z Brassica rapa HOM05D001249 ORTHO05D003440 7.5e-22 108.6 249 27.7
CDE02G4753 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 9.8e-22 108.2 249 27.7
Cc03_g16190 Coffea canephora HOM05D001249 ORTHO05D003440 9.8e-22 108.2 249 27.3
DCAR_027489 Daucus carota HOM05D001249 ORTHO05D003440 9.8e-22 108.2 249 28.9
Lj6g0018713 Lotus japonicus HOM05D001249 ORTHO05D003440 9.8e-22 108.2 249 26.5
CARHR139220 Cardamine hirsuta HOM05D001249 ORTHO05D003440 1.3e-21 107.8 249 28.1
PSO170G3486 Papaver somniferum HOM05D001249 ORTHO05D003440 1.3e-21 107.8 270 28.5
Cfa008531 Carpinus fangiana HOM05D001249 ORTHO05D003440 1.7e-21 107.5 249 26.1
Ca_06180_v3 Cicer arietinum L. HOM05D001249 ORTHO05D003440 1.7e-21 107.5 267 26.2
Os03g0843300 Oryza sativa ssp. japonica HOM05D001249 ORTHO05D003440 1.7e-21 107.5 250 26.0
Sc25g0002220 Simmondsia chinensis HOM05D001249 ORTHO05D003440 1.7e-21 107.5 249 27.7
BcaB01g03333 Brassica carinata HOM05D001249 ORTHO05D003440 2.2e-21 107.1 249 28.1
BcaB06g29513 Brassica carinata HOM05D001249 ORTHO05D003440 2.2e-21 107.1 249 27.3
BolC4t28588H Brassica oleracea HOM05D001249 ORTHO05D003440 2.2e-21 107.1 249 27.3
BcaB06g29354 Brassica carinata HOM05D001249 ORTHO05D003440 2.9e-21 106.7 249 27.3
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 2.9e-21 106.7 249 26.9
Carub.0004s2661 Capsella rubella HOM05D001249 ORTHO05D003440 2.9e-21 106.7 249 28.1
Duzib093G0930 Durio zibethinus HOM05D001249 ORTHO05D003440 2.9e-21 106.7 249 26.9
Thhalv10001537m.g Eutrema salsugineum HOM05D001249 ORTHO05D003440 2.9e-21 106.7 249 27.3
AL4G42930 Arabidopsis lyrata HOM05D001249 ORTHO05D003440 3.7e-21 106.3 249 28.1
BraA04t18777Z Brassica rapa HOM05D001249 ORTHO05D003440 3.7e-21 106.3 249 27.3
Lju124C5T8 Lonicera japonica HOM05D001249 ORTHO05D003440 3.7e-21 106.3 249 26.9
Mapoly0002s0220 Marchantia polymorpha HOM05D001249 ORTHO05D003440 3.7e-21 106.3 267 25.1
Sed0007404 Sechium edule HOM05D001249 ORTHO05D003440 3.7e-21 106.3 249 25.3
HPP92_001207 Vanilla planifolia HOM05D001249 ORTHO05D003440 3.7e-21 106.3 249 27.3
Lalb_Chr04g0249331 Lupinus albus HOM05D001249 ORTHO05D003440 4.9e-21 105.9 249 26.5
ATR0743G044 Amborella trichopoda HOM05D001249 ORTHO05D003440 6.4e-21 105.5 249 27.7
A04p33180 Brassica napus HOM05D001249 ORTHO05D003440 6.4e-21 105.5 249 26.9
Migut.G00799 Erythranthe guttata HOM05D001249 ORTHO05D003440 6.4e-21 105.5 267 27.0
PSO384G3429 Papaver somniferum HOM05D001249 ORTHO05D003440 6.4e-21 105.5 270 27.8
Manes.05G208200 Manihot esculenta HOM05D001249 ORTHO05D003440 8.3e-21 105.1 252 29.4
Zm00001eb064120 Zea mays HOM05D001249 ORTHO05D003440 8.3e-21 105.1 267 24.7
Atru.chr3.1961 Acer truncatum HOM05D001249 ORTHO05D003440 1.1e-20 104.8 249 26.5
Phvul.006G018100 Phaseolus vulgaris HOM05D001249 ORTHO05D003440 1.1e-20 104.8 252 28.2
CAN.G68.1 Capsicum annuum HOM05D001249 ORTHO05D003440 1.4e-20 104.4 249 25.7
Ca_26658_v3 Cicer arietinum L. HOM05D001249 ORTHO05D003440 1.4e-20 104.4 252 29.0
Phvul.008G203600 Phaseolus vulgaris HOM05D001249 ORTHO05D003440 1.4e-20 104.4 249 26.9
QL10p064706 Quercus lobata HOM05D001249 ORTHO05D003440 1.4e-20 104.4 249 25.3
QL10p064865 Quercus lobata HOM05D001249 ORTHO05D003440 1.4e-20 104.4 249 25.3
AT2G44060 Arabidopsis thaliana HOM05D001249 ORTHO05D003440 1.9e-20 104.0 249 26.1
CANSAT56G2692 Cannabis sativa HOM05D001249 ORTHO05D003440 1.9e-20 104.0 249 25.7
FvH4_1g00090 Fragaria vesca HOM05D001249 ORTHO05D003440 1.9e-20 104.0 252 27.8
Lalb_Chr15g0080151 Lupinus albus HOM05D001249 ORTHO05D003440 1.9e-20 104.0 252 29.0
PGR142G4250 Punica granatum HOM05D001249 ORTHO05D003440 1.9e-20 104.0 249 26.5
QL10p065831 Quercus lobata HOM05D001249 ORTHO05D003440 1.9e-20 104.0 249 24.9
Dinv24741 Davidia involucrata HOM05D001249 ORTHO05D003440 2.4e-20 103.6 249 26.5
ECA233G0816 Erigeron canadensis HOM05D001249 ORTHO05D003440 2.4e-20 103.6 250 29.6
Glyma.02G277300 Glycine max HOM05D001249 ORTHO05D003440 2.4e-20 103.6 249 26.5
Oeu014978.1 Olea europaea HOM05D001249 ORTHO05D003440 2.4e-20 103.6 249 26.1
THA.LOC104802350 Tarenaya hassleriana HOM05D001249 ORTHO05D003440 2.4e-20 103.6 249 26.5
TAR362G1111 Trochodendron aralioides HOM05D001249 ORTHO05D003440 2.4e-20 103.6 249 26.5
Aa31LG1G25730 Aethionema arabicum HOM05D001249 ORTHO05D003440 3.2e-20 103.2 249 26.1
CiPaw.01G202900 Carya illinoinensis HOM05D001249 ORTHO05D003440 3.2e-20 103.2 249 26.1
Ciclev10020871m.g Citrus clementina HOM05D001249 ORTHO05D003440 3.2e-20 103.2 249 25.7
Nn1g09415 Nelumbo nucifera HOM05D001249 ORTHO05D003440 3.2e-20 103.2 252 27.8
Sp4g26140 Schrenkiella parvula HOM05D001249 ORTHO05D003440 3.2e-20 103.2 249 26.1
FAN28G2707 Fragaria x ananassa HOM05D001249 ORTHO05D003440 4.1e-20 102.8 252 27.8
Glyma.14G037300 Glycine max HOM05D001249 ORTHO05D003440 4.1e-20 102.8 249 26.5
Actinidia18386 Actinidia chinensis HOM05D006787 ORTHO05D003440 5.4e-20 102.4 248 25.8
Peaxi162Scf01205g00175 Petunia axillaris HOM05D001249 ORTHO05D003440 5.4e-20 102.4 249 26.1
RcHm_v2.0_Chr2g0084381 Rosa chinensis HOM05D001249 ORTHO05D003440 5.4e-20 102.4 252 28.2
Thecc.05G000700 Theobroma cacao HOM05D001249 ORTHO05D003440 5.4e-20 102.4 249 26.5
Aqoxy6G00001 Aquilegia oxysepala HOM05D001249 ORTHO05D003440 7.1e-20 102.1 267 25.1
Lalb_Chr10g0106081 Lupinus albus HOM05D001249 ORTHO05D003440 7.1e-20 102.1 249 26.5
Potri.007G146300 Populus trichocarpa HOM05D001249 ORTHO05D003440 7.1e-20 102.1 249 25.7
FAN26G0381 Fragaria x ananassa HOM05D001249 ORTHO05D003440 9.2e-20 101.7 252 27.8
Glyma.20G044800 Glycine max HOM05D001249 ORTHO05D003440 9.2e-20 101.7 252 28.2
MD15G1142200 Malus domestica HOM05D001249 ORTHO05D003440 9.2e-20 101.7 252 27.0
vmacro00731 Vaccinium macrocarpon HOM05D001249 ORTHO05D003440 9.2e-20 101.7 249 26.5
VMungo0540G2213 Vigna mungo HOM05D001249 ORTHO05D003440 9.2e-20 101.7 252 27.8
CiPaw.02G125500 Carya illinoinensis HOM05D001249 ORTHO05D003440 1.2e-19 101.3 249 24.9
Lsat_1_v5_gn_1_82580 Lactuca sativa HOM05D001249 ORTHO05D003440 1.2e-19 101.3 249 26.1
DCAR_023793 Daucus carota HOM05D001249 ORTHO05D003440 1.6e-19 100.9 249 26.5
Sabra07G0115100 Salix brachista HOM05D001249 ORTHO05D003440 1.6e-19 100.9 249 24.5
TWI63G1312 Tripterygium wilfordii HOM05D001249 ORTHO05D003440 1.6e-19 100.9 236 25.8
Migut.N03015 Erythranthe guttata HOM05D001249 ORTHO05D003440 2.1e-19 100.5 249 26.1
Nitab4.5_0003681g0020 Nicotiana tabacum HOM05D001249 ORTHO05D003440 2.1e-19 100.5 249 24.9
Hund12304 Selenicereus undatus HOM05D001249 ORTHO05D003440 2.1e-19 100.5 249 26.1
HanXRQChr01g0017591 Helianthus annuus HOM05D001249 ORTHO05D003440 2.7e-19 100.1 250 27.2
SGA_v2.0_scaffold37G14908 Striga asiatica HOM05D001249 ORTHO05D003440 2.7e-19 100.1 252 26.2
vmacro03772 Vaccinium macrocarpon HOM05D001249 ORTHO05D003440 2.7e-19 100.1 249 26.1
AagrBONN_evm.TU.Sc2ySwM_117.2490 Anthoceros agrestis HOM05D001249 ORTHO05D003440 3.5e-19 99.8 249 26.5
Nitab4.5_0000348g0040 Nicotiana tabacum HOM05D001249 ORTHO05D003440 3.5e-19 99.8 249 24.5
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 3.5e-19 99.8 271 27.3
Ah.07g203310 Amaranthus hybridus HOM05D001249 ORTHO05D003440 4.6e-19 99.4 267 24.0
COL.COLO4_32523 Corchorus olitorius HOM05D001249 ORTHO05D003440 6.0e-19 99.0 249 25.3
ECA248G2519 Erigeron canadensis HOM05D001249 ORTHO05D003440 6.0e-19 99.0 250 26.4
SEGI_02724 Sequoiadendron giganteum HOM05D001249 ORTHO05D003440 6.0e-19 99.0 270 27.8
MSTRG.8086 Avicennia marina HOM05D001249 ORTHO05D003440 7.8e-19 98.6 252 26.6
Nitab4.5_0005148g0040 Nicotiana tabacum HOM05D001249 ORTHO05D003440 7.8e-19 98.6 252 27.4
Solyc08g015690.4 Solanum lycopersicum HOM05D001249 ORTHO05D003440 7.8e-19 98.6 249 24.5
Sopen08g005800 Solanum pennellii HOM05D001249 ORTHO05D003440 7.8e-19 98.6 249 24.5
Cpa.g.sc9.242 Carica papaya HOM05D001249 ORTHO05D003440 1.0e-18 98.2 249 24.9
Gohir.A01G231800 Gossypium hirsutum HOM05D001249 ORTHO05D003440 1.0e-18 98.2 249 25.7
Gohir.D01G221900 Gossypium hirsutum HOM05D001249 ORTHO05D003440 1.0e-18 98.2 249 25.7
Gorai.002G268600 Gossypium raimondii HOM05D001249 ORTHO05D003440 1.0e-18 98.2 249 25.7
MBI07_g27882_MAGBIO Magnolia biondii HOM05D001249 ORTHO05D003440 1.0e-18 98.2 249 26.1
Prupe.7G271000 Prunus persica HOM05D001249 ORTHO05D003440 1.0e-18 98.2 249 25.3
Aqoxy6G00880 Aquilegia oxysepala HOM05D001249 ORTHO05D003440 1.3e-18 97.8 267 25.8
PSO541G5475 Papaver somniferum HOM05D001249 ORTHO05D003440 1.3e-18 97.8 252 27.0
MBI16_g27589_MAGBIO Magnolia biondii HOM05D001249 ORTHO05D003440 1.7e-18 97.4 252 26.6
PGSC0003DMG400006460 Solanum tuberosum HOM05D001249 ORTHO05D003440 2.3e-18 97.1 249 25.7
PGSC0003DMG400013715 Solanum tuberosum HOM05D001249 ORTHO05D003440 3.0e-18 96.7 249 25.7
Peaxi162Scf00057g01912 Petunia axillaris HOM05D001249 ORTHO05D003440 3.9e-18 96.3 252 26.6
Peaxi162Scf63976g00001 Petunia axillaris HOM05D001249 ORTHO05D003440 3.9e-18 96.3 252 26.6
TAR376G0188 Trochodendron aralioides HOM05D001249 ORTHO05D003440 3.9e-18 96.3 267 24.7
SGA_v2.0_scaffold12G06226 Striga asiatica HOM05D001249 ORTHO05D003440 5.1e-18 95.9 249 24.9
SalBow6G0898 Salvia bowleyana HOM05D001249 ORTHO05D003440 8.6e-18 95.1 270 26.3
EL10Ac3g06181 Beta vulgaris HOM05D001249 ORTHO05D003440 1.5e-17 94.4 249 25.3
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 1.9e-17 94.0 249 26.9
AUR62002497 Chenopodium quinoa HOM05D001249 ORTHO05D003440 1.9e-17 94.0 249 24.9
PSO675G8641 Papaver somniferum HOM05D001249 ORTHO05D003440 2.5e-17 93.6 252 27.0
Sopen12g008300 Solanum pennellii HOM05D001249 ORTHO05D003440 2.5e-17 93.6 249 25.7
arahy.Tifrunner.gnm1.ann1.R434E2 Arachis hypogaea HOM05D001249 ORTHO05D003440 3.3e-17 93.2 229 27.9
CSS0028444 Camellia sinensis var. sinensis HOM05D001249 ORTHO05D003440 3.3e-17 93.2 173 30.6
AUR62023689 Chenopodium quinoa HOM05D001249 ORTHO05D003440 3.3e-17 93.2 249 25.3
Pp3c23_18440 Physcomitrium patens HOM05D001249 ORTHO05D003440 4.3e-17 92.8 257 25.7
arahy.Tifrunner.gnm1.ann1.L9LT8B Arachis hypogaea HOM05D001249 ORTHO05D003440 5.6e-17 92.4 229 27.5
Nn5g29337 Nelumbo nucifera HOM05D001249 ORTHO05D003440 1.2e-16 91.3 267 24.3
MBI10_g03654_MAGBIO Magnolia biondii HOM05D001249 ORTHO05D003440 6.2e-16 89.0 252 26.6
Pp3c24_14840 Physcomitrium patens HOM05D001249 ORTHO05D003440 1.4e-15 87.8 267 24.0
QL10p064899 Quercus lobata HOM05D001249 ORTHO05D003440 1.2e-14 84.7 173 27.2
CDE04G1507 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 1.5e-14 84.3 206 24.3
Manes.01G009601 Manihot esculenta HOM05D001249 ORTHO05D003440 9.9e-14 81.6 254 24.8
CDE09G1295 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 1.3e-13 81.3 178 27.5
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 6.0e-11 72.4 178 29.2
MD02G1000600 Malus domestica HOM05D001249 ORTHO05D003440 1.0e-10 71.6 252 24.2
BcaC02g07138 Brassica carinata HOM05D001249 ORTHO05D003440 1.1e-09 68.2 154 27.3
Gohir.A03G218500 Gossypium hirsutum HOM05D001249 ORTHO05D003440 1.1e-09 68.2 180 23.9
CDE07G0014 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 1.5e-09 67.8 160 28.1
SHI34456 Sapria himalayana HOM05D001249 ORTHO05D003440 3.3e-09 66.6 150 26.0
SHI01299 Sapria himalayana HOM05D001249 ORTHO05D003440 4.7e-08 62.8 154 26.6
SHI33111 Sapria himalayana HOM05D001249 ORTHO05D003440 3.1e-07 60.1 153 26.1
Lju41A14T32 Lonicera japonica HOM05D001249 ORTHO05D003440 5.2e-07 59.3 236 23.3
SHI15069 Sapria himalayana HOM05D001249 ORTHO05D003440 5.2e-07 59.3 134 25.4
SHI53195 Sapria himalayana HOM05D001249 ORTHO05D003440 5.2e-07 59.3 154 24.7


User provided reference genes

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