Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 1.0e-97 360.1 192 100.0
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 2.9e-52 209.1 191 57.1
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 6.1e-50 201.4 195 54.9
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 7.0e-46 188.0 195 53.3
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.2e-45 187.2 192 54.2
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 4.5e-45 185.3 193 53.4
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.9e-45 184.9 192 53.6
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 1.3e-44 183.7 195 52.3
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 1.7e-44 183.3 192 53.1
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 1.7e-44 183.3 191 51.8
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 2.9e-44 182.6 193 52.3
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 2.9e-44 182.6 193 52.3
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 3.8e-44 182.2 195 53.8
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 3.8e-44 182.2 194 52.6
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 5.0e-44 181.8 191 53.4
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 6.5e-44 181.4 191 52.4
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 6.5e-44 181.4 195 52.3
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 8.5e-44 181.0 197 52.8
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.1e-43 180.6 191 51.8
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 1.1e-43 180.6 192 52.1
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 1.4e-43 180.3 194 51.5
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 1.9e-43 179.9 198 49.5
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 1.9e-43 179.9 192 52.1
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 2.5e-43 179.5 192 52.1
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 5.5e-43 178.3 192 52.6
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 5.5e-43 178.3 198 52.5
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 7.2e-43 177.9 192 51.6
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 7.2e-43 177.9 200 50.5
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.2e-43 177.9 200 50.5
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 1.6e-42 176.8 192 50.5
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 2.1e-42 176.4 197 51.3
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 3.6e-42 175.6 197 51.8
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 3.6e-42 175.6 200 50.0
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 3.6e-42 175.6 193 49.7
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 4.7e-42 175.3 191 49.7
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 6.1e-42 174.9 194 51.5
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 6.1e-42 174.9 193 53.9
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 8.0e-42 174.5 194 53.1
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 8.0e-42 174.5 194 52.1
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 1.0e-41 174.1 194 52.1
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 1.0e-41 174.1 195 50.3
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 1.0e-41 174.1 198 49.0
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 1.4e-41 173.7 191 48.7
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 1.4e-41 173.7 198 51.5
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.4e-41 173.7 200 50.0
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 1.4e-41 173.7 192 52.6
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 1.8e-41 173.3 193 52.3
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 1.8e-41 173.3 197 50.3
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 1.8e-41 173.3 197 50.3
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 1.8e-41 173.3 198 50.5
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 1.8e-41 173.3 198 49.0
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 1.8e-41 173.3 198 48.5
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.8e-41 173.3 193 51.8
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 2.3e-41 172.9 197 51.3
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 2.3e-41 172.9 194 51.0
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 2.3e-41 172.9 190 48.9
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 2.3e-41 172.9 195 49.2
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 3.0e-41 172.6 197 49.2
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 3.0e-41 172.6 199 49.7
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 3.0e-41 172.6 197 50.3
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 3.0e-41 172.6 197 50.3
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 3.0e-41 172.6 188 50.0
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 3.0e-41 172.6 196 48.0
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 3.0e-41 172.6 190 52.1
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 3.0e-41 172.6 193 52.3
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 3.9e-41 172.2 192 50.0
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 5.2e-41 171.8 198 49.0
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 6.7e-41 171.4 205 46.8
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 6.7e-41 171.4 197 49.7
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 6.7e-41 171.4 197 49.7
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 8.8e-41 171.0 197 50.3
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 8.8e-41 171.0 195 49.7
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 8.8e-41 171.0 195 49.7
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 8.8e-41 171.0 193 51.8
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 1.1e-40 170.6 197 49.7
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.1e-40 170.6 193 48.7
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 1.1e-40 170.6 195 47.2
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.5e-40 170.2 170 52.9
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 1.5e-40 170.2 191 51.3
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 1.5e-40 170.2 197 50.8
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.5e-40 170.2 200 50.0
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.5e-40 170.2 192 49.5
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.6e-40 169.5 197 50.8
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 2.6e-40 169.5 195 51.3
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 3.3e-40 169.1 192 49.0
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 5.7e-40 168.3 188 48.9
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 5.7e-40 168.3 191 50.8
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.7e-40 168.3 200 49.5
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 7.4e-40 167.9 188 52.7
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 9.7e-40 167.5 195 48.7
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 9.7e-40 167.5 188 50.5
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 9.7e-40 167.5 197 48.7
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 9.7e-40 167.5 197 49.7
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 1.7e-39 166.8 193 50.3
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 1.7e-39 166.8 195 46.7
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 2.2e-39 166.4 195 47.2
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 2.8e-39 166.0 193 48.7
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 3.7e-39 165.6 201 49.8
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 4.8e-39 165.2 191 49.7
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 4.8e-39 165.2 186 48.4
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 8.2e-39 164.5 180 53.3
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 8.2e-39 164.5 201 49.3
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 8.2e-39 164.5 195 47.2
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 3.1e-38 162.5 198 47.5
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 4.1e-38 162.2 191 48.7
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 5.3e-38 161.8 196 49.5
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 9.1e-38 161.0 168 53.0
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 1.2e-37 160.6 196 49.0
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.6e-37 160.2 182 52.2
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 2.0e-37 159.8 198 47.0
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 3.5e-37 159.1 166 53.0
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 4.5e-37 158.7 192 45.3
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 1.0e-36 157.5 183 47.5
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 2.9e-36 156.0 191 46.6
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 7.2e-35 151.4 181 47.5
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.7e-34 149.4 227 41.4
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 4.7e-34 148.7 176 49.4
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 6.1e-34 148.3 196 45.4
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 6.1e-34 148.3 230 43.5
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 1.4e-33 147.1 164 50.0
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 1.1e-30 137.5 192 44.3
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.8e-30 136.7 214 39.7
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 1.8e-30 136.7 168 50.0
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 9.1e-30 134.4 164 45.7
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.3e-28 130.6 174 43.1
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 1.9e-27 126.7 325 31.4
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 4.2e-27 125.6 205 40.5
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 6.3e-23 111.7 243 35.4
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 1.1e-22 110.9 212 38.2
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 4.1e-22 109.0 195 38.5
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.0e-21 106.7 99 54.5
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 3.8e-20 102.4 127 48.8
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 2.8e-18 96.3 98 48.0
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 3.0e-17 92.8 72 66.7
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 8.9e-17 91.3 106 50.0
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 1.2e-16 90.9 72 62.5
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.0e-16 90.1 73 65.8
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 4.4e-16 89.0 109 48.6
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.3e-15 87.4 73 64.4
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 8.3e-15 84.7 85 48.2
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 8.3e-15 84.7 224 32.6
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.4e-14 84.0 76 59.2
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 1.6e-13 80.5 187 31.0
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 5.9e-13 78.6 198 32.8
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.0e-12 77.8 68 61.8
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 8.6e-12 74.7 72 54.2
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.3e-11 71.6 69 52.2
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 9.5e-11 71.2 73 52.1
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.7e-10 68.9 95 38.9
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 7.5e-08 61.6 43 69.8
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 9.8e-08 61.2 73 43.8
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 3.7e-07 59.3 72 47.2
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 8.3e-07 58.2 109 33.9
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 7.0e-06 55.1 56 55.4
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 9.2e-06 54.7 79 39.2


User provided reference genes

Program Settings