Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 3.2e-240 834.7 433 100.0
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 6.3e-63 245.7 283 49.5
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 1.9e-59 234.2 280 48.2
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 4.1e-54 216.5 385 36.4
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 7.8e-53 212.2 276 43.1
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 2.9e-52 210.3 276 43.5
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 3.9e-52 209.9 278 43.5
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 8.6e-52 208.8 297 40.7
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 1.5e-51 208.0 281 41.3
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 3.3e-51 206.8 538 32.5
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 9.5e-51 205.3 288 43.1
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 1.6e-50 204.5 494 33.0
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 3.6e-50 203.4 277 41.9
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 4.7e-50 203.0 277 41.2
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 4.7e-50 203.0 297 40.1
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 8.0e-50 202.2 487 32.6
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 8.0e-50 202.2 497 33.4
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 1.8e-49 201.1 494 33.0
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 1.8e-49 201.1 276 42.8
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 2.3e-49 200.7 279 41.6
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 3.1e-49 200.3 276 42.8
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 5.2e-49 199.5 282 40.8
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 6.8e-49 199.1 276 42.4
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 8.9e-49 198.7 308 39.0
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 8.9e-49 198.7 285 39.3
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 8.9e-49 198.7 277 42.2
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 8.9e-49 198.7 287 40.4
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 8.9e-49 198.7 279 43.0
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 2.0e-48 197.6 409 33.5
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 2.0e-48 197.6 276 40.6
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 2.6e-48 197.2 277 41.5
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 4.4e-48 196.4 284 40.1
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 4.4e-48 196.4 277 40.4
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 5.8e-48 196.1 309 38.5
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.3e-47 194.9 307 41.4
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 1.7e-47 194.5 273 41.4
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 2.2e-47 194.1 280 40.7
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 2.9e-47 193.7 300 38.7
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 3.7e-47 193.4 277 40.4
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 4.9e-47 193.0 362 35.6
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 6.4e-47 192.6 276 42.0
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 6.4e-47 192.6 276 42.0
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 6.4e-47 192.6 276 42.0
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 8.3e-47 192.2 305 39.0
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 1.4e-46 191.4 341 38.4
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 1.9e-46 191.0 286 37.8
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.9e-46 191.0 309 37.9
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 2.4e-46 190.7 514 31.3
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 3.2e-46 190.3 297 39.7
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 4.1e-46 189.9 495 31.1
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 7.0e-46 189.1 335 36.4
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 1.2e-45 188.3 341 37.8
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 2.0e-45 187.6 277 38.6
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 2.7e-45 187.2 339 36.0
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 3.5e-45 186.8 294 39.1
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 3.5e-45 186.8 277 38.3
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 4.6e-45 186.4 280 37.9
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 6.0e-45 186.0 329 36.8
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 6.0e-45 186.0 333 37.2
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.3e-44 184.9 280 37.5
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 8.6e-44 182.2 276 39.9
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 3.3e-43 180.3 294 40.1
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 3.3e-43 180.3 306 35.3
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 5.6e-43 179.5 306 37.3
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 7.3e-43 179.1 281 38.8
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 9.5e-43 178.7 276 39.5
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 9.5e-43 178.7 380 34.5
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.2e-42 178.3 381 34.4
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 3.6e-42 176.8 325 36.3
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 3.6e-42 176.8 291 37.8
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.7e-42 176.4 282 39.0
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.7e-42 176.4 282 39.0
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 6.2e-42 176.0 396 31.6
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 1.1e-41 175.3 396 31.6
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 1.1e-41 175.3 276 40.2
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 1.1e-41 175.3 323 38.1
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 1.8e-41 174.5 311 35.4
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 2.3e-41 174.1 462 32.0
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 1.5e-40 171.4 276 37.0
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 4.4e-40 169.9 555 26.8
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 4.4e-40 169.9 324 35.2
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 1.7e-39 167.9 307 35.5
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 1.7e-39 167.9 278 37.4
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 2.2e-39 167.5 282 36.2
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 2.2e-39 167.5 298 34.6
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 2.2e-39 167.5 323 34.4
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.2e-39 167.5 323 34.4
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.9e-39 167.2 456 30.5
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.9e-39 167.2 323 34.4
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 2.9e-39 167.2 333 35.7
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 2.9e-39 167.2 277 35.7
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 8.3e-39 165.6 319 34.2
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.1e-38 165.2 320 35.0
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 4.1e-38 163.3 277 36.5
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 4.1e-38 163.3 389 33.7
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.1e-37 161.0 323 34.4
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.1e-37 161.0 303 35.6
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 1.0e-36 158.7 366 34.4
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 1.7e-36 157.9 275 34.5
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 5.1e-36 156.4 467 27.4
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 6.6e-36 156.0 444 31.3
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 4.0e-33 146.7 275 34.2
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 5.2e-33 146.4 282 33.3
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 8.9e-33 145.6 372 30.9
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 8.9e-33 145.6 222 40.1
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 8.9e-33 145.6 314 31.5
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 1.7e-31 141.4 305 31.1
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 1.6e-29 134.8 317 29.3
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.5e-29 133.7 318 31.4
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 7.8e-29 132.5 277 32.9
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 1.0e-28 132.1 287 31.7
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 1.7e-28 131.3 294 34.4
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 5.6e-27 126.3 255 32.2
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 2.4e-25 120.9 306 32.0
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 2.4e-25 120.9 257 31.1
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.8e-25 119.4 257 30.7
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.5e-24 118.2 257 31.1
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 2.0e-24 117.9 183 38.3
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 3.4e-24 117.1 183 38.8
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 4.4e-24 116.7 459 24.0
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 4.4e-24 116.7 270 32.6
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.9e-24 115.5 255 31.0
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 4.6e-21 106.7 362 28.7
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 2.3e-20 104.4 243 32.5
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 3.0e-20 104.0 124 41.9
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 1.4e-17 95.1 65 64.6
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 2.6e-16 90.9 271 30.3
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 3.4e-16 90.5 77 53.2
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.2e-15 87.8 131 39.7
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.4e-14 84.3 332 26.5
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 7.9e-13 79.3 145 37.2
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 3.0e-12 77.4 121 31.4
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.0e-12 77.4 276 25.4
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 8.7e-12 75.9 138 34.8
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 7.3e-11 72.8 183 30.6
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.3e-10 72.0 227 27.8
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 1.3e-10 72.0 137 34.3
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 1.8e-09 68.2 284 28.5
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.6e-08 64.3 146 32.9
Os12g0620100 Oryza sativa ssp. japonica HOM05D000354 ORTHO05D000747 3.2e-06 57.4 53 45.3
HPP92_011044 Vanilla planifolia HOM05D000354 ORTHO05D000747 3.2e-06 57.4 49 46.9
Lalb_Chr19g0134221 Lupinus albus HOM05D000440 ORTHO05D001065 4.2e-06 57.0 54 44.4


User provided reference genes

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