Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 1.7e-105 386.0 185 100.0
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 7.1e-72 274.2 180 66.1
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 1.3e-62 243.4 181 59.7
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 1.1e-61 240.4 184 57.1
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 5.6e-61 238.0 181 57.5
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 5.6e-61 238.0 181 59.1
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 1.3e-60 236.9 175 61.1
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 1.6e-60 236.5 181 58.6
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 1.6e-60 236.5 181 58.0
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 2.1e-60 236.1 177 59.3
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 2.1e-60 236.1 181 59.1
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 2.1e-60 236.1 180 59.4
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 3.7e-60 235.3 180 60.6
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 4.8e-60 235.0 181 56.9
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 4.8e-60 235.0 181 56.9
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 4.8e-60 235.0 181 58.0
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 6.2e-60 234.6 180 58.3
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 8.1e-60 234.2 180 56.7
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 8.1e-60 234.2 180 56.7
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 1.1e-59 233.8 180 57.2
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 1.4e-59 233.4 180 55.6
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 1.4e-59 233.4 180 58.3
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 1.4e-59 233.4 181 57.5
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 1.4e-59 233.4 184 55.4
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 1.4e-59 233.4 180 57.8
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 1.8e-59 233.0 180 56.7
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 1.8e-59 233.0 181 57.5
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 1.8e-59 233.0 184 56.5
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 1.8e-59 233.0 180 56.1
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 2.4e-59 232.6 184 55.4
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 2.4e-59 232.6 173 59.5
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.4e-59 232.6 181 55.8
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 3.1e-59 232.3 181 56.9
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 3.1e-59 232.3 181 56.9
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 3.1e-59 232.3 181 56.9
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 5.3e-59 231.5 181 57.5
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 5.3e-59 231.5 181 56.9
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 6.9e-59 231.1 181 56.4
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 6.9e-59 231.1 181 56.4
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 6.9e-59 231.1 180 57.8
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 9.0e-59 230.7 181 56.4
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 9.0e-59 230.7 181 55.2
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 1.2e-58 230.3 180 57.2
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 1.5e-58 229.9 181 55.8
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 1.5e-58 229.9 180 57.8
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 1.5e-58 229.9 181 55.8
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 1.5e-58 229.9 180 54.4
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.5e-58 229.9 181 56.4
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.5e-58 229.9 180 56.7
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 1.5e-58 229.9 181 56.9
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 1.5e-58 229.9 181 56.4
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 2.0e-58 229.6 181 55.2
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 2.0e-58 229.6 181 55.8
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 2.0e-58 229.6 175 58.3
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 2.0e-58 229.6 181 55.8
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 2.0e-58 229.6 180 57.2
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.0e-58 229.6 183 54.6
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 2.6e-58 229.2 181 55.2
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 2.6e-58 229.2 180 57.8
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 2.6e-58 229.2 181 55.8
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 2.6e-58 229.2 181 55.8
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 2.6e-58 229.2 180 57.2
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.6e-58 229.2 183 54.6
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 2.6e-58 229.2 181 55.2
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 3.4e-58 228.8 181 55.8
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 4.5e-58 228.4 181 55.2
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 4.5e-58 228.4 181 56.4
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 4.5e-58 228.4 180 56.1
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 5.8e-58 228.0 181 54.7
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 5.8e-58 228.0 180 57.8
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 7.6e-58 227.6 180 56.1
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 1.0e-57 227.3 180 55.6
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 1.3e-57 226.9 180 56.7
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 1.3e-57 226.9 181 56.9
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.3e-57 226.9 180 55.6
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 1.3e-57 226.9 180 55.6
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 1.3e-57 226.9 181 55.2
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 1.7e-57 226.5 181 54.7
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 1.7e-57 226.5 181 55.2
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 1.7e-57 226.5 181 54.1
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 2.2e-57 226.1 181 54.7
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 2.2e-57 226.1 181 54.7
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.2e-57 226.1 181 54.7
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 2.2e-57 226.1 180 56.1
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 3.8e-57 225.3 183 54.6
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 3.8e-57 225.3 181 54.7
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 3.8e-57 225.3 180 54.4
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 3.8e-57 225.3 181 55.8
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 4.9e-57 224.9 180 56.1
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 4.9e-57 224.9 180 56.7
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 4.9e-57 224.9 180 55.6
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 6.5e-57 224.6 180 54.4
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 6.5e-57 224.6 182 54.4
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 8.4e-57 224.2 180 55.6
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 8.4e-57 224.2 180 55.6
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 8.4e-57 224.2 180 55.0
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 1.1e-56 223.8 180 55.6
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 1.4e-56 223.4 180 55.0
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 1.4e-56 223.4 180 55.0
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 1.4e-56 223.4 181 54.1
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 1.9e-56 223.0 180 56.1
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 2.5e-56 222.6 180 55.6
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 3.2e-56 222.2 182 53.8
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 7.1e-56 221.1 180 52.8
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 7.1e-56 221.1 180 54.4
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 7.1e-56 221.1 180 56.7
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.2e-55 220.3 180 55.6
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 1.6e-55 219.9 181 53.0
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 2.1e-55 219.5 181 52.5
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 2.1e-55 219.5 173 56.1
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 2.7e-55 219.2 181 52.5
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 4.6e-55 218.4 181 55.2
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 1.3e-54 216.9 181 55.2
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 5.1e-54 214.9 181 51.9
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 5.1e-54 214.9 181 54.1
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 1.1e-53 213.8 172 54.1
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 2.5e-53 212.6 181 53.6
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 3.3e-53 212.2 181 53.6
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 5.7e-53 211.5 181 53.0
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 2.1e-52 209.5 181 52.5
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 2.8e-52 209.1 180 52.2
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 3.7e-52 208.8 181 52.5
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 1.3e-49 200.3 182 51.1
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 8.5e-49 197.6 183 51.4
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 3.2e-48 195.7 186 51.1
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 6.1e-47 191.4 180 48.9
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 4.3e-45 185.3 172 52.3
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 5.0e-41 171.8 177 47.5
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 1.4e-38 163.7 168 47.0
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 1.4e-32 143.7 172 45.3
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 1.3e-28 130.6 155 43.2
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 5.9e-26 121.7 87 66.7
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 1.5e-21 107.1 87 57.5
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 3.7e-12 75.9 53 58.5
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 1.3e-09 67.4 85 37.6


User provided reference genes

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