Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 3.8e-154 548.1 278 100.0
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 2.3e-21 107.1 140 37.9
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 5.0e-21 105.9 148 39.9
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 1.9e-20 104.0 155 38.7
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 3.3e-20 103.2 128 43.8
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 3.6e-19 99.8 152 40.8
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 3.4e-17 93.2 117 41.9
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 1.7e-16 90.9 97 44.3
SEGI_27702 Sequoiadendron giganteum HOM05D002377 ORTHO05D003486 1.7e-16 90.9 106 40.6
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 1.1e-15 88.2 149 38.3
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 1.4e-15 87.8 96 44.8
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 1.9e-15 87.4 136 40.4
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 3.2e-15 86.7 133 36.8
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 5.4e-15 85.9 123 38.2
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 7.0e-15 85.5 119 41.2
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.2e-14 84.7 122 35.2
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 3.5e-14 83.2 131 35.9
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 6.0e-14 82.4 102 46.1
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 6.0e-14 82.4 143 36.4
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 7.8e-14 82.0 143 36.4
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 1.7e-13 80.9 106 38.7
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 5.0e-13 79.3 132 35.6
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 8.6e-13 78.6 111 38.7
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 1.1e-12 78.2 148 33.1
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.1e-12 78.2 99 41.4
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 1.1e-12 78.2 112 36.6
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 1.9e-12 77.4 112 40.2
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 2.5e-12 77.0 132 34.1
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 3.3e-12 76.6 111 36.0
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 3.3e-12 76.6 106 36.8
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 4.3e-12 76.3 131 35.1
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.6e-12 75.9 148 32.4
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 5.6e-12 75.9 116 35.3
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 7.3e-12 75.5 156 34.0
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 7.3e-12 75.5 156 34.0
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 7.3e-12 75.5 131 33.6
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 7.3e-12 75.5 99 39.4
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 9.5e-12 75.1 132 33.3
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 9.5e-12 75.1 132 33.3
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 9.5e-12 75.1 108 36.1
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 1.6e-11 74.3 122 36.1
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 1.6e-11 74.3 120 38.3
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 1.6e-11 74.3 133 36.8
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 1.6e-11 74.3 98 40.8
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 2.1e-11 73.9 136 33.8
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 2.1e-11 73.9 106 35.8
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 2.1e-11 73.9 140 34.3
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 2.1e-11 73.9 134 30.6
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 2.1e-11 73.9 131 34.4
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 2.8e-11 73.6 132 33.3
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 2.8e-11 73.6 132 33.3
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 2.8e-11 73.6 105 35.2
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 2.8e-11 73.6 124 33.9
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 3.6e-11 73.2 96 41.7
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 4.7e-11 72.8 133 31.6
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 4.7e-11 72.8 161 32.3
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 6.2e-11 72.4 99 38.4
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 8.0e-11 72.0 103 37.9
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.1e-10 71.6 114 36.0
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 1.4e-10 71.2 113 31.9
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 1.8e-10 70.9 160 28.8
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 2.3e-10 70.5 106 37.7
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 2.3e-10 70.5 106 37.7
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 2.3e-10 70.5 103 38.8
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 2.3e-10 70.5 107 38.3
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 2.3e-10 70.5 106 37.7
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 2.3e-10 70.5 175 29.7
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 2.3e-10 70.5 160 30.6
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 3.1e-10 70.1 115 33.0
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 3.1e-10 70.1 110 37.3
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 4.0e-10 69.7 151 29.8
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 5.2e-10 69.3 104 36.5
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 5.2e-10 69.3 182 30.8
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 6.8e-10 68.9 168 31.0
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 6.8e-10 68.9 133 30.8
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 8.9e-10 68.6 115 35.7
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 8.9e-10 68.6 119 34.5
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 8.9e-10 68.6 108 35.2
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 1.2e-09 68.2 103 37.9
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 1.2e-09 68.2 147 27.9
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 2.0e-09 67.4 136 30.9
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.0e-09 67.4 128 33.6
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 2.6e-09 67.0 107 33.6
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.6e-09 67.0 108 35.2
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.6e-09 67.0 111 38.7
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 3.4e-09 66.6 114 34.2
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 3.4e-09 66.6 102 40.2
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 5.8e-09 65.9 92 34.8
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 5.8e-09 65.9 151 27.8
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 5.8e-09 65.9 129 31.8
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 5.8e-09 65.9 107 34.6
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 7.5e-09 65.5 119 31.1
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 7.5e-09 65.5 106 32.1
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 7.5e-09 65.5 107 33.6
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.3e-08 64.7 94 38.3
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 1.3e-08 64.7 101 34.7
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 1.7e-08 64.3 112 33.9
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 1.7e-08 64.3 99 37.4
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 2.2e-08 63.9 190 28.9
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.2e-08 63.9 106 34.0
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 2.2e-08 63.9 106 34.0
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 2.9e-08 63.5 118 31.4
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 2.9e-08 63.5 99 41.4
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 2.9e-08 63.5 117 35.0
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 2.9e-08 63.5 88 36.4
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 2.9e-08 63.5 185 26.5
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 3.7e-08 63.2 102 35.3
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 3.7e-08 63.2 94 38.3
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 3.7e-08 63.2 126 34.9
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 3.7e-08 63.2 101 33.7
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 3.7e-08 63.2 113 32.7
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 4.9e-08 62.8 124 36.3
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 4.9e-08 62.8 122 30.3
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 4.9e-08 62.8 113 34.5
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 6.4e-08 62.4 106 32.1
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 6.4e-08 62.4 97 36.1
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 6.4e-08 62.4 154 31.8
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 8.3e-08 62.0 130 27.7
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 8.3e-08 62.0 93 35.5
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 8.3e-08 62.0 114 33.3
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 1.4e-07 61.2 99 34.3
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 1.9e-07 60.8 129 31.0
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 2.4e-07 60.5 112 33.0
Cc10_g13660 Coffea canephora HOM05D006236 ORTHO05D003486 2.4e-07 60.5 82 39.0
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 4.1e-07 59.7 106 32.1
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 7.1e-07 58.9 107 33.6
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 7.1e-07 58.9 115 29.6
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 9.2e-07 58.5 131 30.5
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 9.2e-07 58.5 154 28.6
SEGI_11207 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 9.2e-07 58.5 78 41.0
SEGI_02275 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.2e-06 58.2 73 42.5
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.6e-06 57.8 106 31.1
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 1.6e-06 57.8 108 31.5
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.7e-06 57.0 139 29.5
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.5e-06 56.6 123 30.1
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 3.5e-06 56.6 120 30.8
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 4.6e-06 56.2 138 29.0
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.6e-06 56.2 138 29.7
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 4.6e-06 56.2 254 28.0
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 4.6e-06 56.2 112 32.1
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 6.0e-06 55.8 114 32.5
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 6.0e-06 55.8 114 32.5
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 6.0e-06 55.8 121 31.4
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 6.0e-06 55.8 99 35.4
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 7.8e-06 55.5 109 30.3
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 7.8e-06 55.5 118 29.7
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 7.8e-06 55.5 118 29.7
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 7.8e-06 55.5 109 30.3


User provided reference genes

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