Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 0.0e+00 1540.0 788 100.0
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 5.2e-132 476.1 758 37.3
Pp3c17_18030 Physcomitrium patens HOM05D016889 ORTHO05D026570 4.6e-128 463.0 863 36.3
SEGI_29789 Sequoiadendron giganteum HOM05D016889 ORTHO05D026570 4.5e-107 393.3 365 52.6
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 3.2e-36 157.9 448 32.4
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 1.1e-15 89.7 338 26.9
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 1.1e-09 69.7 168 36.3
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 2.5e-09 68.6 101 45.5
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 2.5e-09 68.6 101 45.5
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 3.3e-09 68.2 66 54.5
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 5.6e-09 67.4 64 56.2
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 5.6e-09 67.4 139 40.3
SEGI_22784 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 5.6e-09 67.4 85 42.4
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.3e-08 66.2 101 43.6
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 1.3e-08 66.2 120 35.8
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 2.1e-08 65.5 52 57.7
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 2.8e-08 65.1 71 49.3
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 3.6e-08 64.7 64 53.1
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 3.6e-08 64.7 151 30.5
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 3.6e-08 64.7 151 30.5
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 4.8e-08 64.3 70 48.6
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 4.8e-08 64.3 136 33.1
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 4.8e-08 64.3 136 33.1
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 6.2e-08 63.9 100 40.0
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 6.2e-08 63.9 68 52.9
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 8.1e-08 63.5 136 32.4
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 1.1e-07 63.2 98 41.8
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 1.1e-07 63.2 65 49.2
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 1.4e-07 62.8 75 46.7
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 1.4e-07 62.8 54 57.4
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 1.4e-07 62.8 73 49.3
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 1.8e-07 62.4 54 57.4
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 1.8e-07 62.4 57 52.6
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.8e-07 62.4 65 47.7
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.4e-07 62.0 94 40.4
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 2.4e-07 62.0 65 49.2
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 2.4e-07 62.0 270 23.7
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 3.1e-07 61.6 64 48.4
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 3.1e-07 61.6 81 43.2
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 3.1e-07 61.6 49 51.0
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 3.1e-07 61.6 49 55.1
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 4.0e-07 61.2 96 39.6
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 4.0e-07 61.2 62 51.6
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 4.0e-07 61.2 62 51.6
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 4.0e-07 61.2 58 50.0
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 4.0e-07 61.2 64 50.0
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 4.0e-07 61.2 52 53.8
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 5.3e-07 60.8 81 43.2
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 5.3e-07 60.8 88 42.0
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 5.3e-07 60.8 131 33.6
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 5.3e-07 60.8 140 32.1
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 5.3e-07 60.8 69 49.3
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 5.3e-07 60.8 127 33.9
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 6.9e-07 60.5 101 38.6
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 6.9e-07 60.5 55 50.9
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 6.9e-07 60.5 49 55.1
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 9.0e-07 60.1 53 54.7
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 9.0e-07 60.1 97 38.1
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 1.2e-06 59.7 86 43.0
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 1.2e-06 59.7 132 34.1
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 1.2e-06 59.7 52 50.0
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 1.5e-06 59.3 53 56.6
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 1.5e-06 59.3 67 52.2
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 1.5e-06 59.3 57 45.6
PSO339G1220 Papaver somniferum HOM05D000189 ORTHO05D008543 1.5e-06 59.3 140 29.3
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 1.5e-06 59.3 107 35.5
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 1.5e-06 59.3 54 55.6
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 1.5e-06 59.3 66 51.5
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 2.0e-06 58.9 387 22.7
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 2.0e-06 58.9 116 35.3
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 2.0e-06 58.9 56 50.0
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 2.0e-06 58.9 98 39.8
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 2.0e-06 58.9 54 46.3
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 2.6e-06 58.5 73 43.8
FAN05G5772 Fragaria x ananassa HOM05D000189 ORTHO05D008543 2.6e-06 58.5 126 28.6
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 2.6e-06 58.5 124 37.9
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 2.6e-06 58.5 73 43.8
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 3.4e-06 58.2 54 53.7
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 3.4e-06 58.2 65 44.6
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 4.5e-06 57.8 81 42.0
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 4.5e-06 57.8 81 42.0
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 4.5e-06 57.8 136 32.4
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 4.5e-06 57.8 136 32.4
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 4.5e-06 57.8 140 31.4
Hund04391 Selenicereus undatus HOM05D000189 ORTHO05D008543 4.5e-06 57.8 128 29.7
SEGI_08770 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 4.5e-06 57.8 118 37.3
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 5.8e-06 57.4 54 51.9
MELO3C026358.2 Cucumis melo HOM05D000189 ORTHO05D008543 5.8e-06 57.4 129 29.5
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 5.8e-06 57.4 73 43.8
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 5.8e-06 57.4 52 53.8
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 5.8e-06 57.4 74 39.2
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 7.6e-06 57.0 81 42.0
Zm00001eb320310 Zea mays HOM05D000189 ORTHO05D008543 7.6e-06 57.0 126 29.4
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 9.9e-06 56.6 112 34.8
FvH4_6g39230 Fragaria vesca HOM05D000189 ORTHO05D008543 9.9e-06 56.6 126 27.8
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 9.9e-06 56.6 103 35.9
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 9.9e-06 56.6 50 54.0
Os09g0560450 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D008543 9.9e-06 56.6 126 29.4
Pp3c10_6070 Physcomitrium patens HOM05D000189 ORTHO05D008543 9.9e-06 56.6 136 27.9
RcHm_v2.0_Chr2g0153071 Rosa chinensis HOM05D000189 ORTHO05D008543 9.9e-06 56.6 126 27.8


User provided reference genes

Program Settings