Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 1.5e-104 382.9 197 100.0
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 1.1e-73 280.4 190 71.1
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 4.0e-73 278.5 195 69.7
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 4.2e-70 268.5 189 69.8
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 7.1e-70 267.7 188 69.7
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 2.7e-69 265.8 192 67.7
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 4.6e-69 265.0 190 67.9
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 4.6e-69 265.0 192 66.7
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 4.6e-69 265.0 188 66.5
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 4.6e-69 265.0 188 68.1
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 6.0e-69 264.6 188 69.1
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 1.0e-68 263.8 196 65.8
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 1.3e-68 263.5 194 66.0
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 1.3e-68 263.5 196 66.8
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 1.7e-68 263.1 188 68.6
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 2.3e-68 262.7 196 66.3
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 3.0e-68 262.3 188 68.1
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 5.1e-68 261.5 191 66.5
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 5.1e-68 261.5 191 66.5
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 6.6e-68 261.2 188 67.6
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 6.6e-68 261.2 191 66.0
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 6.6e-68 261.2 194 65.5
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 8.7e-68 260.8 196 64.8
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 8.7e-68 260.8 194 65.5
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 1.1e-67 260.4 188 66.5
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 1.1e-67 260.4 188 66.0
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 1.5e-67 260.0 190 66.8
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 1.5e-67 260.0 188 65.4
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 1.9e-67 259.6 188 66.0
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.9e-67 259.6 196 65.3
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 1.9e-67 259.6 188 66.5
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 2.5e-67 259.2 195 65.6
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 2.5e-67 259.2 192 65.1
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 3.3e-67 258.8 188 67.0
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 3.3e-67 258.8 196 64.8
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 3.3e-67 258.8 196 65.3
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 4.3e-67 258.5 190 66.3
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 4.3e-67 258.5 188 67.6
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 4.3e-67 258.5 196 64.8
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 4.3e-67 258.5 189 66.7
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 4.3e-67 258.5 192 65.1
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 5.6e-67 258.1 188 66.5
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 5.6e-67 258.1 196 64.8
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 5.6e-67 258.1 188 66.5
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 7.3e-67 257.7 188 66.0
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 7.3e-67 257.7 188 67.0
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 7.3e-67 257.7 188 66.5
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 7.3e-67 257.7 188 67.0
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 9.6e-67 257.3 196 63.8
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 9.6e-67 257.3 188 66.5
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 9.6e-67 257.3 188 66.0
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 9.6e-67 257.3 196 64.8
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 9.6e-67 257.3 194 64.9
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 1.3e-66 256.9 188 65.4
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 1.6e-66 256.5 188 65.4
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 1.6e-66 256.5 188 66.0
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 2.1e-66 256.1 192 64.6
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 2.1e-66 256.1 188 66.5
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 2.8e-66 255.8 187 66.8
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 2.8e-66 255.8 195 64.1
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 3.6e-66 255.4 191 65.4
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 3.6e-66 255.4 195 65.1
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 6.2e-66 254.6 188 67.6
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 6.2e-66 254.6 188 66.0
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 6.2e-66 254.6 188 65.4
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 6.2e-66 254.6 192 64.6
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 8.1e-66 254.2 189 65.6
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 1.1e-65 253.8 196 65.3
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.1e-65 253.8 188 64.4
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.1e-65 253.8 188 64.4
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 1.1e-65 253.8 188 64.4
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 1.1e-65 253.8 196 64.8
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 1.1e-65 253.8 188 64.9
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 1.4e-65 253.4 197 64.5
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 1.8e-65 253.1 188 63.3
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 3.1e-65 252.3 192 65.1
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 3.1e-65 252.3 192 65.1
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 3.1e-65 252.3 192 65.1
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 3.1e-65 252.3 196 64.3
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 5.3e-65 251.5 192 64.6
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 5.3e-65 251.5 187 64.7
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 6.9e-65 251.1 188 63.3
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 1.2e-64 250.4 196 64.3
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 1.2e-64 250.4 188 63.3
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 1.2e-64 250.4 196 62.8
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 1.5e-64 250.0 188 65.4
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 2.6e-64 249.2 190 65.3
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 3.4e-64 248.8 188 65.4
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 3.4e-64 248.8 192 65.1
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 4.4e-64 248.4 194 63.4
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 5.8e-64 248.1 191 61.8
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 5.8e-64 248.1 192 64.6
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 7.6e-64 247.7 192 64.6
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 1.3e-63 246.9 192 64.1
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 1.3e-63 246.9 192 64.6
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 1.3e-63 246.9 190 64.2
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 2.2e-63 246.1 192 64.1
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 2.9e-63 245.7 192 64.1
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 4.9e-63 245.0 192 63.5
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 1.4e-62 243.4 192 64.1
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 9.3e-62 240.7 192 63.5
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 1.3e-60 236.9 191 62.8
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 9.9e-56 220.7 199 55.8
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 3.8e-55 218.8 196 57.1
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 1.4e-54 216.9 191 61.8
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 1.9e-54 216.5 196 57.7
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 5.6e-51 204.9 152 67.8
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 9.6e-51 204.1 183 55.2
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 3.4e-48 195.7 136 74.3
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 1.9e-43 179.9 198 46.5
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 1.6e-42 176.8 136 66.2
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 8.2e-42 174.5 108 77.8
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 2.0e-40 169.9 128 66.4
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 1.7e-39 166.8 128 65.6
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 7.9e-37 157.9 188 46.8
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 1.9e-35 153.3 108 64.8
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 6.9e-33 144.8 183 42.6
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 2.1e-21 106.7 76 67.1
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.0e-20 104.4 84 64.3
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 2.0e-11 73.6 101 47.5
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 5.7e-11 72.0 102 47.1
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 4.5e-08 62.4 50 58.0
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 5.9e-08 62.0 77 48.1
Psat7g159680 Pisum sativum HOM05D006396 ORTHO05D008172 2.5e-06 56.6 43 55.8


User provided reference genes

Program Settings