Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 8.7e-151 537.0 275 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 2.7e-112 409.1 271 73.8
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 3.6e-112 408.7 271 74.2
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 3.6e-112 408.7 271 74.9
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 3.1e-108 395.6 271 69.4
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 7.0e-108 394.4 271 68.3
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 7.0e-108 394.4 271 68.3
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 1.2e-107 393.7 271 68.6
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 1.2e-107 393.7 271 68.3
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 1.6e-107 393.3 271 68.6
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 1.6e-107 393.3 271 71.6
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 3.5e-107 392.1 271 67.9
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 1.3e-106 390.2 271 67.2
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 1.7e-106 389.8 271 67.5
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 2.3e-106 389.4 271 67.9
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 2.3e-106 389.4 273 67.0
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 2.9e-106 389.0 271 67.2
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 5.0e-106 388.3 271 66.8
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 6.6e-106 387.9 271 67.2
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 6.6e-106 387.9 273 66.3
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 8.6e-106 387.5 271 67.5
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 8.6e-106 387.5 273 66.3
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.1e-105 387.1 273 66.3
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 1.1e-105 387.1 272 66.5
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 1.1e-105 387.1 271 68.6
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 3.3e-105 385.6 273 66.3
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 3.3e-105 385.6 270 67.0
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 4.2e-105 385.2 271 66.8
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 5.5e-105 384.8 271 66.1
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 5.5e-105 384.8 271 66.4
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 7.2e-105 384.4 271 64.9
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 9.5e-105 384.0 271 66.1
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 9.5e-105 384.0 271 65.3
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 1.6e-104 383.3 271 67.9
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 2.8e-104 382.5 271 66.1
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 4.7e-104 381.7 271 68.3
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 4.7e-104 381.7 271 66.8
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 4.7e-104 381.7 271 65.7
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 6.1e-104 381.3 271 66.8
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 6.1e-104 381.3 271 65.7
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 6.1e-104 381.3 271 65.7
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 8.0e-104 380.9 271 66.1
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 8.0e-104 380.9 271 67.2
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 1.0e-103 380.6 271 65.3
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 1.0e-103 380.6 271 65.7
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 1.0e-103 380.6 271 68.3
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 1.4e-103 380.2 271 66.4
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 1.4e-103 380.2 271 66.8
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 1.4e-103 380.2 271 67.2
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 1.8e-103 379.8 271 65.7
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 2.3e-103 379.4 271 65.7
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 2.3e-103 379.4 271 67.5
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 4.0e-103 378.6 271 67.2
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 4.0e-103 378.6 271 65.7
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 4.0e-103 378.6 271 64.6
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 5.2e-103 378.3 271 66.4
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 5.2e-103 378.3 270 68.1
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 5.2e-103 378.3 271 66.4
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 6.8e-103 377.9 271 66.4
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 1.2e-102 377.1 271 67.2
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 1.5e-102 376.7 271 64.6
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 2.0e-102 376.3 271 65.7
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 2.6e-102 375.9 271 65.3
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 3.4e-102 375.6 271 65.7
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 7.5e-102 374.4 271 65.7
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 9.8e-102 374.0 271 64.9
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 1.3e-101 373.6 271 66.4
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 1.3e-101 373.6 271 65.3
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 1.7e-101 373.2 271 64.6
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 1.7e-101 373.2 272 66.5
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 2.2e-101 372.9 271 65.3
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 2.9e-101 372.5 271 66.1
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 3.7e-101 372.1 261 68.6
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 4.9e-101 371.7 271 66.4
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 6.3e-101 371.3 271 65.3
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 1.1e-100 370.5 271 64.2
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.4e-100 370.2 271 65.3
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 2.4e-100 369.4 271 64.6
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 3.2e-100 369.0 271 65.7
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 5.4e-100 368.2 271 64.2
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 5.4e-100 368.2 274 63.5
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 2.0e-99 366.3 271 63.1
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 2.0e-99 366.3 271 63.8
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 2.7e-99 365.9 272 62.9
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.5e-99 365.5 271 64.9
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.5e-99 365.5 271 64.9
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 4.6e-99 365.2 301 58.8
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 4.6e-99 365.2 271 62.7
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.3e-98 363.6 272 62.9
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 1.7e-98 363.2 271 63.5
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 1.5e-97 360.1 305 58.4
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 7.3e-97 357.8 303 58.1
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 7.3e-97 357.8 271 64.9
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.6e-96 356.7 263 62.7
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 4.7e-96 355.1 258 65.1
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 1.0e-95 354.0 272 63.6
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.2e-94 350.5 271 61.6
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 5.4e-92 341.7 271 61.6
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 9.2e-92 340.9 271 61.3
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 2.7e-91 339.3 241 67.6
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 3.5e-91 339.0 272 63.2
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 1.0e-90 337.4 271 60.9
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 3.9e-90 335.5 271 60.9
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 1.2e-88 330.5 241 65.6
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.4e-87 327.0 283 58.0
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 2.0e-86 323.2 381 45.9
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 2.0e-86 323.2 290 58.6
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 3.7e-85 318.9 244 62.7
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 3.2e-84 315.8 221 67.9
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 4.1e-84 315.5 221 67.9
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 2.3e-82 309.7 269 58.0
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.6e-80 303.5 273 56.8
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 3.7e-77 292.4 197 70.1
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 8.4e-77 291.2 252 57.1
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 6.0e-75 285.0 224 62.1
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 7.8e-75 284.6 271 52.4
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 1.0e-74 284.3 271 52.0
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 3.0e-74 282.7 271 52.0
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 3.1e-71 272.7 180 71.7
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 4.4e-70 268.9 279 48.4
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 1.7e-66 256.9 271 49.1
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 1.3e-61 240.7 241 52.7
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 2.2e-61 240.0 271 45.4
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 6.4e-61 238.4 168 66.1
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 1.1e-57 227.6 153 69.3
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 3.3e-57 226.1 152 69.1
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 9.3e-52 208.0 165 60.6
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 6.2e-48 195.3 208 51.4
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.2e-43 181.0 153 57.5
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 1.1e-41 174.5 272 39.0
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 7.2e-36 155.2 173 50.9
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 7.2e-28 128.6 271 32.5
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.6e-27 127.5 271 33.2
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 1.6e-27 127.5 159 47.2
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 6.1e-27 125.6 68 82.4
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 1.8e-26 124.0 198 38.4
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 4.1e-23 112.8 210 39.0
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 6.9e-23 112.1 87 58.6
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 2.6e-22 110.2 98 55.1
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 2.9e-21 106.7 268 31.0
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 2.9e-21 106.7 135 40.7
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 2.5e-20 103.6 135 40.0
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 5.5e-20 102.4 97 54.6
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 1.6e-11 74.3 45 75.6
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 4.7e-11 72.8 89 43.8
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 6.7e-10 68.9 58 51.7
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 4.1e-07 59.7 89 38.2


User provided reference genes

Program Settings