Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 6.8e-198 693.7 337 100.0
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 1.0e-116 424.1 324 63.0
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 3.4e-112 409.1 323 62.2
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 1.2e-109 400.6 321 60.4
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 6.6e-108 394.8 321 59.8
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 6.6e-108 394.8 321 59.5
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 5.6e-107 391.7 322 59.6
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 7.3e-107 391.3 321 59.8
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 9.5e-107 391.0 324 59.0
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 1.2e-106 390.6 321 58.6
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.6e-106 390.2 321 59.2
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 1.6e-106 390.2 323 58.8
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 1.6e-106 390.2 322 60.6
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 2.1e-106 389.8 321 59.5
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 2.8e-106 389.4 321 57.3
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.8e-106 389.4 321 59.8
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 3.6e-106 389.0 321 59.5
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 3.6e-106 389.0 325 58.8
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 4.7e-106 388.7 323 60.1
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 6.2e-106 388.3 323 58.5
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 6.2e-106 388.3 321 59.8
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 6.2e-106 388.3 321 57.9
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 1.0e-105 387.5 323 60.4
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.8e-105 386.7 321 59.8
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 2.3e-105 386.3 321 60.4
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 3.1e-105 386.0 322 57.8
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 3.1e-105 386.0 323 59.1
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 4.0e-105 385.6 326 57.7
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 4.0e-105 385.6 321 59.5
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 5.2e-105 385.2 321 58.3
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 5.2e-105 385.2 321 57.3
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 5.2e-105 385.2 321 59.5
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 2.0e-104 383.3 328 58.5
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 2.6e-104 382.9 323 59.4
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 3.4e-104 382.5 321 59.2
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 7.5e-104 381.3 321 58.9
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 9.8e-104 380.9 322 56.8
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 9.8e-104 380.9 325 58.2
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 1.7e-103 380.2 321 57.3
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 1.7e-103 380.2 326 58.0
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 8.3e-103 377.9 324 55.6
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 8.3e-103 377.9 322 57.1
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 1.4e-102 377.1 322 57.1
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 1.9e-102 376.7 322 58.4
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 2.4e-102 376.3 321 56.1
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 2.4e-102 376.3 322 56.8
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 2.4e-102 376.3 322 57.5
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.1e-102 375.6 322 55.0
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 5.4e-102 375.2 324 56.8
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 5.4e-102 375.2 324 57.4
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 7.0e-102 374.8 324 57.7
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 9.2e-102 374.4 322 58.1
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 9.2e-102 374.4 322 56.5
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 1.2e-101 374.0 323 56.0
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 1.2e-101 374.0 322 56.2
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.6e-101 373.6 324 57.1
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 1.6e-101 373.6 322 56.8
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 1.6e-101 373.6 323 57.3
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 1.6e-101 373.6 323 57.3
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 2.7e-101 372.9 323 55.4
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 4.6e-101 372.1 321 57.3
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 4.6e-101 372.1 322 56.2
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 6.0e-101 371.7 321 57.3
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 6.0e-101 371.7 321 58.3
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 6.0e-101 371.7 321 57.9
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 1.0e-100 370.9 318 57.2
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 1.7e-100 370.2 323 55.7
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.7e-100 370.2 321 55.1
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 3.0e-100 369.4 322 57.5
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 3.0e-100 369.4 321 56.4
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 3.0e-100 369.4 327 56.9
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 3.9e-100 369.0 313 58.5
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 5.0e-100 368.6 321 55.1
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 8.6e-100 367.9 322 57.1
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 8.6e-100 367.9 322 57.1
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 8.6e-100 367.9 322 56.5
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 8.6e-100 367.9 325 56.3
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 1.1e-99 367.5 324 55.9
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.1e-99 367.5 323 55.1
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.5e-99 367.1 318 56.9
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.5e-99 367.1 323 57.3
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 1.9e-99 366.7 322 57.1
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 2.5e-99 366.3 322 57.1
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 2.5e-99 366.3 322 55.9
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 4.3e-99 365.5 317 58.0
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 7.3e-99 364.8 321 54.8
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 9.5e-99 364.4 322 56.8
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 9.5e-99 364.4 322 56.5
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 1.2e-98 364.0 322 56.5
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 2.8e-98 362.8 322 57.1
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 3.6e-98 362.5 310 58.4
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 4.7e-98 362.1 322 56.2
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 4.7e-98 362.1 322 54.7
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 4.7e-98 362.1 320 55.6
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.7e-98 362.1 319 53.9
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 8.1e-98 361.3 321 56.4
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 8.1e-98 361.3 322 56.8
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 1.4e-97 360.5 337 54.0
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 1.4e-97 360.5 323 57.0
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 1.4e-97 360.5 322 56.5
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 1.4e-97 360.5 344 52.6
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 2.3e-97 359.8 322 56.2
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 3.1e-97 359.4 373 49.3
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 4.0e-97 359.0 321 53.6
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 4.0e-97 359.0 322 56.5
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.0e-97 359.0 321 56.4
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 4.0e-97 359.0 323 55.1
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 1.2e-96 357.5 322 56.2
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 1.2e-96 357.5 322 56.2
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 2.0e-96 356.7 322 54.7
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 7.5e-96 354.8 324 54.0
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.3e-95 354.0 321 56.7
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 1.7e-95 353.6 376 50.0
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 6.4e-95 351.7 324 54.9
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.4e-94 349.7 321 54.2
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 3.2e-94 349.4 321 54.5
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 5.4e-94 348.6 294 55.4
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 4.6e-93 345.5 295 57.3
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 2.5e-91 339.7 322 53.7
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 9.5e-91 337.8 400 47.0
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 9.5e-91 337.8 272 61.0
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 1.2e-90 337.4 395 45.6
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.6e-90 335.9 323 52.9
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 3.1e-89 332.8 341 50.7
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 5.2e-89 332.0 321 50.8
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 2.0e-88 330.1 295 58.6
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.7e-87 327.0 321 50.8
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 3.7e-87 325.9 355 46.8
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 4.9e-87 325.5 344 49.4
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 8.4e-87 324.7 341 49.0
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.2e-85 320.9 303 53.5
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 3.5e-85 319.3 323 50.2
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 3.0e-84 316.2 321 50.5
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 8.4e-79 298.1 321 47.4
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 3.1e-73 279.6 327 45.0
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 1.2e-72 277.7 244 58.2
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 9.3e-70 268.1 337 45.4
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 1.2e-69 267.7 292 48.6
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.5e-67 260.0 293 46.1
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 4.9e-63 245.7 221 55.2
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 1.1e-62 244.6 200 61.0
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 7.6e-56 221.9 210 57.6
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.7e-55 220.7 184 60.9
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.5e-48 197.6 167 58.7
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 4.2e-46 189.5 189 54.5
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.1e-44 182.6 310 41.6
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 8.2e-42 175.3 145 54.5
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 1.8e-41 174.1 146 60.3
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 2.4e-41 173.7 153 60.8
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 2.2e-34 150.6 147 49.7
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 7.7e-32 142.1 124 52.4
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 3.2e-30 136.7 111 61.3
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 1.6e-29 134.4 128 52.3
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 1.1e-25 121.7 98 57.1
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 8.5e-23 112.1 92 57.6
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 5.5e-22 109.4 123 44.7
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 1.1e-19 101.7 67 67.2
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 2.0e-19 100.9 107 53.3
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 2.8e-18 97.1 69 63.8
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.4e-17 94.7 59 71.2
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 1.2e-16 91.7 75 52.0
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 3.2e-14 83.6 88 48.9
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 5.5e-14 82.8 78 51.3
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 8.0e-13 79.0 152 36.8
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 2.4e-09 67.4 82 45.1
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 4.2e-06 56.6 42 57.1


User provided reference genes

Program Settings