Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 2.2e-137 492.3 250 100.0
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 2.6e-53 213.0 244 43.0
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 3.4e-53 212.6 244 42.6
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 6.5e-52 208.4 245 43.7
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 1.1e-51 207.6 245 42.0
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 4.2e-51 205.7 245 41.2
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 4.2e-51 205.7 209 47.8
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 1.6e-50 203.8 245 42.4
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 7.9e-50 201.4 243 43.2
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 7.9e-50 201.4 249 40.2
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 1.0e-49 201.1 245 42.0
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 1.3e-49 200.7 252 40.5
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 1.8e-49 200.3 249 41.4
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 2.3e-49 199.9 243 42.0
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 3.0e-49 199.5 243 42.4
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 3.0e-49 199.5 243 39.9
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 1.5e-48 197.2 245 41.2
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 2.5e-48 196.4 243 40.7
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 2.5e-48 196.4 242 41.3
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 2.5e-48 196.4 244 41.8
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 4.3e-48 195.7 239 38.9
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 7.4e-48 194.9 251 38.2
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 7.4e-48 194.9 244 41.0
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.3e-47 194.1 214 44.9
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 1.6e-47 193.7 244 41.4
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 4.8e-47 192.2 247 40.1
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 4.8e-47 192.2 243 40.3
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 4.8e-47 192.2 221 44.3
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 4.8e-47 192.2 243 41.2
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 6.3e-47 191.8 247 40.1
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 6.3e-47 191.8 249 36.5
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.3e-47 191.8 214 44.4
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 8.2e-47 191.4 243 39.1
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 1.1e-46 191.0 249 38.2
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 1.1e-46 191.0 249 38.6
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 1.1e-46 191.0 245 39.6
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 1.8e-46 190.3 244 40.2
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 1.8e-46 190.3 243 40.3
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 2.4e-46 189.9 252 40.1
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 2.4e-46 189.9 206 45.1
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 2.4e-46 189.9 252 39.3
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 3.1e-46 189.5 241 39.8
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 4.1e-46 189.1 248 39.1
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 9.1e-46 188.0 252 38.5
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 9.1e-46 188.0 246 38.2
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 9.1e-46 188.0 245 41.6
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 1.2e-45 187.6 243 38.7
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 1.2e-45 187.6 246 38.2
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 1.2e-45 187.6 246 38.2
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 1.5e-45 187.2 252 39.3
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 1.5e-45 187.2 244 39.3
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 1.5e-45 187.2 243 39.5
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 2.0e-45 186.8 252 39.3
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 2.0e-45 186.8 248 38.3
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 2.6e-45 186.4 212 45.3
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 2.6e-45 186.4 244 39.3
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 2.6e-45 186.4 246 37.4
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 4.5e-45 185.7 256 39.1
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 5.9e-45 185.3 243 39.5
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 5.9e-45 185.3 247 39.7
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 7.7e-45 184.9 243 39.5
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.0e-44 184.5 226 44.7
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 1.3e-44 184.1 256 39.5
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 1.7e-44 183.7 252 38.5
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.7e-44 183.7 221 43.4
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 2.2e-44 183.3 253 39.1
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 2.2e-44 183.3 245 40.0
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.9e-44 183.0 217 43.8
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 6.5e-44 181.8 246 41.5
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 1.1e-43 181.0 252 37.7
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 1.1e-43 181.0 245 40.4
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 1.1e-43 181.0 245 40.4
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 1.1e-43 181.0 240 38.8
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 1.4e-43 180.6 251 35.9
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 1.4e-43 180.6 252 37.7
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 1.4e-43 180.6 241 38.6
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 1.4e-43 180.6 247 38.9
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 1.9e-43 180.3 242 38.0
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 2.5e-43 179.9 247 37.2
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 3.2e-43 179.5 253 36.8
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 3.2e-43 179.5 252 38.9
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 5.5e-43 178.7 252 38.5
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 5.5e-43 178.7 251 36.7
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 1.2e-42 177.6 250 37.6
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 1.6e-42 177.2 244 39.3
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 1.6e-42 177.2 230 38.3
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 1.6e-42 177.2 251 36.3
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 2.1e-42 176.8 248 38.7
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 3.6e-42 176.0 252 37.3
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 4.6e-42 175.6 243 39.5
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 4.6e-42 175.6 252 36.9
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 4.6e-42 175.6 241 37.3
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 6.1e-42 175.3 252 37.3
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 7.9e-42 174.9 250 35.2
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 7.9e-42 174.9 222 41.0
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 1.0e-41 174.5 247 38.1
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 2.3e-41 173.3 216 40.7
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 3.0e-41 172.9 224 40.2
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 5.1e-41 172.2 253 38.3
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 5.1e-41 172.2 256 34.4
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 6.7e-41 171.8 243 37.4
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 1.5e-40 170.6 241 38.6
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 2.0e-40 170.2 249 36.9
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 7.4e-40 168.3 241 39.0
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 1.7e-39 167.2 241 38.6
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 2.2e-39 166.8 241 38.6
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 4.8e-39 165.6 177 47.5
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 6.3e-39 165.2 241 38.6
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 1.2e-37 161.0 240 36.2
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 3.4e-37 159.5 296 30.7
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.7e-36 157.1 150 53.3
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 2.8e-31 139.8 196 39.8
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 1.6e-29 134.0 240 33.8
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 1.6e-29 134.0 255 34.9
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 2.6e-29 133.3 260 33.8
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 1.0e-28 131.3 255 34.5
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 1.3e-28 131.0 201 38.3
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 1.3e-28 131.0 157 37.6
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 1.7e-28 130.6 249 33.7
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 5.5e-27 125.6 156 40.4
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 9.1e-14 81.6 102 38.2
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 1.7e-12 77.4 123 35.0
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 3.8e-12 76.3 110 39.1
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 1.0e-09 68.2 102 35.3


User provided reference genes

Program Settings