Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO146G0251 Selaginella moellendorffii HOM05D000968 ORTHO05D028763 9.5e-132 473.4 221 100.0
SMO160G0004 Selaginella moellendorffii HOM05D000968 ORTHO05D028763 2.2e-96 355.9 221 80.1
Pp3c3_2860 Physcomitrium patens HOM05D000968 ORTHO05D003096 4.5e-49 198.7 239 45.2
Mapoly0036s0118 Marchantia polymorpha HOM05D000968 ORTHO05D003096 1.2e-46 190.7 245 42.9
Cre03.g207502 Chlamydomonas reinhardtii HOM05D000968 ORTHO05D028763 5.4e-26 122.1 224 33.0
CBR_g22876 Chara braunii HOM05D000968 ORTHO05D028763 3.7e-19 99.4 93 49.5
FAN09G0642 Fragaria x ananassa HOM05D000968 ORTHO05D003096 9.2e-18 94.7 247 29.1
FAN02G1239 Fragaria x ananassa HOM05D000968 ORTHO05D003096 3.5e-17 92.8 246 28.5
FAN14G5857 Fragaria x ananassa HOM05D000968 ORTHO05D003096 7.8e-17 91.7 246 28.9
RcHm_v2.0_Chr3g0466281 Rosa chinensis HOM05D000968 ORTHO05D003096 2.3e-16 90.1 246 28.5
Duzib128G1577 Durio zibethinus HOM05D000968 ORTHO05D003096 3.0e-16 89.7 241 27.0
Glyma.10G208700 Glycine max HOM05D000968 ORTHO05D003096 3.9e-16 89.4 233 28.3
MD12G1144500 Malus domestica HOM05D000968 ORTHO05D003096 5.1e-16 89.0 245 27.3
FvH4_6g13410 Fragaria vesca HOM05D000968 ORTHO05D003096 6.6e-16 88.6 246 28.5
CANSAT56G2456 Cannabis sativa HOM05D000968 ORTHO05D003096 2.5e-15 86.7 231 26.0
Cfa017353 Carpinus fangiana HOM05D000968 ORTHO05D003096 4.3e-15 85.9 245 25.7
Duzib093G1811 Durio zibethinus HOM05D000968 ORTHO05D003096 5.6e-15 85.5 241 26.6
Lj5g0003625 Lotus japonicus HOM05D000968 ORTHO05D003096 7.3e-15 85.1 241 26.1
Dinv37156 Davidia involucrata HOM05D000968 ORTHO05D003096 9.5e-15 84.7 239 27.2
Phvul.007G097300 Phaseolus vulgaris HOM05D000968 ORTHO05D003096 9.5e-15 84.7 232 28.0
Gorai.007G376700 Gossypium raimondii HOM05D000968 ORTHO05D003096 1.6e-14 84.0 245 28.2
Peaxi162Scf00330g00719 Petunia axillaris HOM05D000968 ORTHO05D003096 1.6e-14 84.0 245 25.7
Migut.J00314 Erythranthe guttata HOM05D000968 ORTHO05D003096 2.1e-14 83.6 237 24.9
Gohir.A11G327500 Gossypium hirsutum HOM05D000968 ORTHO05D003096 2.8e-14 83.2 244 27.0
Gohir.D11G346400 Gossypium hirsutum HOM05D000968 ORTHO05D003096 2.8e-14 83.2 245 28.2
CANSAT11G2353 Cannabis sativa HOM05D000968 ORTHO05D003096 3.6e-14 82.8 252 25.0
Ciclev10012400m.g Citrus clementina HOM05D000968 ORTHO05D003096 3.6e-14 82.8 246 27.2
unitig_744.g24653 Utricularia gibba HOM05D000968 ORTHO05D003096 3.6e-14 82.8 241 26.6
MELO3C009248.2 Cucumis melo HOM05D000968 ORTHO05D003096 4.7e-14 82.4 247 27.1
Nitab4.5_0000096g0010 Nicotiana tabacum HOM05D000968 ORTHO05D003096 4.7e-14 82.4 236 28.0
Gohir.A01G221726 Gossypium hirsutum HOM05D000968 ORTHO05D003096 6.2e-14 82.0 244 27.0
arahy.Tifrunner.gnm1.ann1.5W9P8T Arachis hypogaea HOM05D000968 ORTHO05D003096 8.1e-14 81.6 232 24.1
CsaV3_3G034790 Cucumis sativus L. HOM05D000968 ORTHO05D003096 8.1e-14 81.6 247 27.1
Actinidia11266 Actinidia chinensis HOM05D000968 ORTHO05D003096 1.1e-13 81.3 242 26.0
AL3G20480 Arabidopsis lyrata HOM05D000968 ORTHO05D003096 1.1e-13 81.3 240 26.7
CiPaw.05G119500 Carya illinoinensis HOM05D000968 ORTHO05D003096 1.1e-13 81.3 249 26.5
Cc02_g11020 Coffea canephora HOM05D000968 ORTHO05D003096 1.1e-13 81.3 236 28.0
Thhalv10021264m.g Eutrema salsugineum HOM05D000968 ORTHO05D003096 1.1e-13 81.3 241 27.0
Hma1.2p1_0936F.1_g238900 Hydrangea macrophylla HOM05D000968 ORTHO05D003096 1.1e-13 81.3 247 27.1
arahy.Tifrunner.gnm1.ann1.3IZ0NN Arachis hypogaea HOM05D000968 ORTHO05D003096 1.4e-13 80.9 232 24.1
Eucgr.G02859 Eucalyptus grandis HOM05D000968 ORTHO05D003096 1.4e-13 80.9 245 24.9
MD01G1104200 Malus domestica HOM05D000968 ORTHO05D003096 1.4e-13 80.9 236 25.0
Rhsim05G0194400 Rhododendron simsii HOM05D000968 ORTHO05D003096 1.4e-13 80.9 247 26.3
Sc06g0001680 Simmondsia chinensis HOM05D000968 ORTHO05D003096 1.8e-13 80.5 236 27.1
vmacro04852 Vaccinium macrocarpon HOM05D000968 ORTHO05D003096 1.8e-13 80.5 241 27.8
AT3G09320 Arabidopsis thaliana HOM05D000968 ORTHO05D003096 2.3e-13 80.1 240 26.7
CAN.G694.32 Capsicum annuum HOM05D000968 ORTHO05D003096 2.3e-13 80.1 241 25.3
TWI38G2143 Tripterygium wilfordii HOM05D000968 ORTHO05D003096 2.3e-13 80.1 241 25.3
CiPaw.01G269800 Carya illinoinensis HOM05D000968 ORTHO05D003096 3.1e-13 79.7 237 25.3
MD07G1171000 Malus domestica HOM05D000968 ORTHO05D003096 3.1e-13 79.7 236 27.5
Cpa.g.sc169.16 Carica papaya HOM05D000968 ORTHO05D003096 4.0e-13 79.3 246 25.6
CDE04G0600 Ceratophyllum demersum HOM05D000968 ORTHO05D003096 4.0e-13 79.3 240 26.2
Sopen05g034070 Solanum pennellii HOM05D000968 ORTHO05D003096 4.0e-13 79.3 246 25.2
Aa31LG3G1820 Aethionema arabicum HOM05D000968 ORTHO05D003096 5.2e-13 79.0 240 26.7
Glyma.01G099100 Glycine max HOM05D000968 ORTHO05D003096 5.2e-13 79.0 248 26.2
Glyma.03G069700 Glycine max HOM05D000968 ORTHO05D003096 5.2e-13 79.0 248 26.2
Lalb_Chr02g0152131 Lupinus albus HOM05D000968 ORTHO05D003096 5.2e-13 79.0 238 25.6
Nn2g13403 Nelumbo nucifera HOM05D000968 ORTHO05D003096 5.2e-13 79.0 241 28.6
Medtr1g094610 Medicago truncatula HOM05D000968 ORTHO05D003096 6.8e-13 78.6 216 24.5
Peaxi162Scf00627g00018 Petunia axillaris HOM05D000968 ORTHO05D003096 6.8e-13 78.6 241 25.7
CARHR083680 Cardamine hirsuta HOM05D000968 ORTHO05D003096 8.9e-13 78.2 240 26.7
MCO13G476 Micromonas commoda HOM05D000571 ORTHO05D003096 1.2e-12 77.8 135 34.1
Nitab4.5_0007184g0010 Nicotiana tabacum HOM05D000968 ORTHO05D003096 1.2e-12 77.8 241 27.4
Psat7g237240 Pisum sativum HOM05D003553 ORTHO05D005072 1.2e-12 77.8 248 28.2
TAR633G1759 Trochodendron aralioides HOM05D000968 ORTHO05D003096 1.2e-12 77.8 240 27.9
Carub.0003s0844 Capsella rubella HOM05D000968 ORTHO05D003096 1.5e-12 77.4 240 26.7
Ca_19975_v3 Cicer arietinum L. HOM05D000968 ORTHO05D003096 1.5e-12 77.4 247 25.1
MELO3C019817.2 Cucumis melo HOM05D000968 ORTHO05D003096 1.5e-12 77.4 236 25.0
HanXRQChr09g0246851 Helianthus annuus HOM05D000968 ORTHO05D003096 1.5e-12 77.4 240 26.7
MD04G1131400 Malus domestica HOM05D000968 ORTHO05D003096 1.5e-12 77.4 250 26.0
Psat6g181880 Pisum sativum HOM05D000968 ORTHO05D003096 1.5e-12 77.4 217 27.6
Potri.006G087400 Populus trichocarpa HOM05D000968 ORTHO05D003096 1.5e-12 77.4 245 25.3
ClCG10G021250 Citrullus lanatus HOM05D000968 ORTHO05D003096 2.0e-12 77.0 229 25.8
Ah.12g059950 Amaranthus hybridus HOM05D000968 ORTHO05D003096 2.6e-12 76.6 240 25.4
CsaV3_6G036620 Cucumis sativus L. HOM05D000968 ORTHO05D003096 2.6e-12 76.6 236 24.2
Lsat_1_v5_gn_9_33481 Lactuca sativa HOM05D000968 ORTHO05D003096 2.6e-12 76.6 240 25.0
Peaxi162Scf00094g01120 Petunia axillaris HOM05D000968 ORTHO05D003096 2.6e-12 76.6 243 25.5
Sp3g07710 Schrenkiella parvula HOM05D000968 ORTHO05D003096 2.6e-12 76.6 241 27.0
Solyc05g055630.3 Solanum lycopersicum HOM05D000968 ORTHO05D003096 2.6e-12 76.6 225 25.8
TPR.G5595 Trifolium pratense HOM05D000968 ORTHO05D003096 2.6e-12 76.6 248 26.6
BcaB04g18533 Brassica carinata HOM05D000425 ORTHO05D003096 3.4e-12 76.3 240 26.2
AUR62042386 Chenopodium quinoa HOM05D000968 ORTHO05D003096 3.4e-12 76.3 248 25.4
Glyma.20G182000 Glycine max HOM05D000968 ORTHO05D003096 3.4e-12 76.3 225 27.1
PSO339G2145 Papaver somniferum HOM05D000968 ORTHO05D003096 3.4e-12 76.3 222 26.1
QL07p048854 Quercus lobata HOM05D000968 ORTHO05D003096 3.4e-12 76.3 246 25.2
BcaC01g04228 Brassica carinata HOM05D000968 ORTHO05D003096 4.4e-12 75.9 240 25.4
C03p43680 Brassica napus HOM05D000968 ORTHO05D003096 4.4e-12 75.9 240 25.4
BolC3t16637H Brassica oleracea HOM05D000968 ORTHO05D003096 4.4e-12 75.9 240 25.4
BraA03t12775Z Brassica rapa HOM05D000968 ORTHO05D003096 4.4e-12 75.9 240 25.8
Nn2g11168 Nelumbo nucifera HOM05D000968 ORTHO05D003096 4.4e-12 75.9 242 25.2
PSO801G0241 Papaver somniferum HOM05D000968 ORTHO05D003096 4.4e-12 75.9 243 24.3
CSS0046701 Camellia sinensis var. sinensis HOM05D000968 ORTHO05D003096 5.8e-12 75.5 241 25.7
Prupe.2G209800 Prunus persica HOM05D000968 ORTHO05D003096 5.8e-12 75.5 242 25.2
A03p36040 Brassica napus HOM05D000968 ORTHO05D003096 7.6e-12 75.1 240 25.8
THA.LOC104816423 Tarenaya hassleriana HOM05D000968 ORTHO05D003096 7.6e-12 75.1 243 28.8
Cc06_g02450 Coffea canephora HOM05D000968 ORTHO05D003096 9.9e-12 74.7 239 24.7
Phvul.010G015000 Phaseolus vulgaris HOM05D000968 ORTHO05D003096 9.9e-12 74.7 248 26.6
CAN.G92.12 Capsicum annuum HOM05D000968 ORTHO05D003096 1.3e-11 74.3 246 23.2
Duzib106G1622 Durio zibethinus HOM05D000968 ORTHO05D003096 1.3e-11 74.3 225 25.3
BcaC05g29661 Brassica carinata HOM05D000968 ORTHO05D003096 1.7e-11 73.9 240 26.2
PSO513G0140 Papaver somniferum HOM05D000968 ORTHO05D003096 1.7e-11 73.9 222 26.6
Sc01g0004450 Simmondsia chinensis HOM05D000968 ORTHO05D003096 1.7e-11 73.9 245 23.7
TPR.G1914 Trifolium pratense HOM05D000968 ORTHO05D003096 1.7e-11 73.9 221 27.1
PSO339G3369 Papaver somniferum HOM05D000968 ORTHO05D003096 2.2e-11 73.6 243 23.9
BcaC05g29520 Brassica carinata HOM05D000968 ORTHO05D003096 2.9e-11 73.2 240 25.8
A05p39630 Brassica napus HOM05D000968 ORTHO05D003096 3.8e-11 72.8 240 26.7
BraA05t22746Z Brassica rapa HOM05D000968 ORTHO05D003096 3.8e-11 72.8 240 26.7
Haze_16850 Corylus avellana HOM05D000968 ORTHO05D003096 3.8e-11 72.8 239 24.3
Gorai.011G237900 Gossypium raimondii HOM05D000968 ORTHO05D003096 3.8e-11 72.8 240 25.0
GSVIVG01034143001 Vitis vinifera HOM05D000968 ORTHO05D003096 4.9e-11 72.4 211 25.6
A05p39640 Brassica napus HOM05D000968 ORTHO05D003096 6.4e-11 72.0 240 25.8
C05p58680 Brassica napus HOM05D000968 ORTHO05D003096 6.4e-11 72.0 240 25.8
BolC5t34517H Brassica oleracea HOM05D000968 ORTHO05D003096 6.4e-11 72.0 240 25.8
Ciclev10032359m.g Citrus clementina HOM05D000968 ORTHO05D003096 8.4e-11 71.6 238 25.6
Gohir.A10G204100 Gossypium hirsutum HOM05D000968 ORTHO05D003096 8.4e-11 71.6 240 24.6
Lj3g0002666 Lotus japonicus HOM05D000968 ORTHO05D003096 8.4e-11 71.6 246 24.8
Nn2g13760 Nelumbo nucifera HOM05D000968 ORTHO05D003096 8.4e-11 71.6 236 25.0
arahy.Tifrunner.gnm1.ann1.79GA3M Arachis hypogaea HOM05D000968 ORTHO05D003096 1.1e-10 71.2 247 25.5
arahy.Tifrunner.gnm1.ann1.G95YVJ Arachis hypogaea HOM05D000968 ORTHO05D003096 1.1e-10 71.2 247 25.5
Gohir.D01G211200 Gossypium hirsutum HOM05D000968 ORTHO05D003096 1.1e-10 71.2 212 26.4
Gorai.002G257000 Gossypium raimondii HOM05D000968 ORTHO05D003096 1.1e-10 71.2 212 26.4
HanXRQChr10g0293311 Helianthus annuus HOM05D000968 ORTHO05D003096 1.1e-10 71.2 236 24.6
vmacro20169 Vaccinium macrocarpon HOM05D000968 ORTHO05D003096 1.1e-10 71.2 180 27.2
Atru.chr12.831 Acer truncatum HOM05D000968 ORTHO05D003096 1.4e-10 70.9 237 26.2
Atru.chr8.1999 Acer truncatum HOM05D000968 ORTHO05D003096 1.4e-10 70.9 248 24.2
Duzib114G0504 Durio zibethinus HOM05D000968 ORTHO05D003096 1.4e-10 70.9 242 25.2
Lalb_Chr21g0313731 Lupinus albus HOM05D000968 ORTHO05D003096 1.4e-10 70.9 172 26.7
ECA232G3929 Erigeron canadensis HOM05D000968 ORTHO05D003096 1.9e-10 70.5 215 26.0
Lalb_Chr07g0192961 Lupinus albus HOM05D000968 ORTHO05D003096 1.9e-10 70.5 249 24.9
Medtr4g021795 Medicago truncatula HOM05D000968 ORTHO05D003096 1.9e-10 70.5 248 25.8
VMungo0331G1489 Vigna mungo HOM05D000968 ORTHO05D003096 1.9e-10 70.5 248 25.8
Lalb_Chr13g0291211 Lupinus albus HOM05D000968 ORTHO05D003096 2.4e-10 70.1 249 24.1
TWI77G0527 Tripterygium wilfordii HOM05D000968 ORTHO05D003096 2.4e-10 70.1 240 23.3
Sopen10g035950 Solanum pennellii HOM05D000968 ORTHO05D003096 3.2e-10 69.7 246 23.6
Thecc.10G080500 Theobroma cacao HOM05D000968 ORTHO05D003096 3.2e-10 69.7 242 26.4
Actinidia38862 Actinidia chinensis HOM05D000968 ORTHO05D003096 4.1e-10 69.3 236 26.3
CAN.G324.12 Capsicum annuum HOM05D000968 ORTHO05D003096 4.1e-10 69.3 239 23.4
Manes.10G049400 Manihot esculenta HOM05D000968 ORTHO05D003096 4.1e-10 69.3 243 23.9
Rhsim09G0149500 Rhododendron simsii HOM05D000968 ORTHO05D003096 4.1e-10 69.3 220 27.7
RhsimUnG0186900 Rhododendron simsii HOM05D000968 ORTHO05D003096 4.1e-10 69.3 220 27.7
Sed0022810 Sechium edule HOM05D000968 ORTHO05D003096 4.1e-10 69.3 216 25.5
ClCG08G007650 Citrullus lanatus HOM05D000968 ORTHO05D003096 5.4e-10 68.9 185 25.9
PGSC0003DMG400023477 Solanum tuberosum HOM05D000968 ORTHO05D003096 7.1e-10 68.6 212 24.5
Lj3A965T73 Lonicera japonica HOM05D000968 ORTHO05D003096 9.2e-10 68.2 229 23.1
TAR623G1777 Trochodendron aralioides HOM05D000968 ORTHO05D003096 9.2e-10 68.2 239 23.8
FvH4_7g18860 Fragaria vesca HOM05D000968 ORTHO05D003096 1.2e-09 67.8 241 23.7
Oeu010097.3 Olea europaea HOM05D000181 ORTHO05D003096 1.2e-09 67.8 187 26.7
QL08p054868 Quercus lobata HOM05D000968 ORTHO05D003096 1.2e-09 67.8 237 23.2
unitig_21.g21018 Utricularia gibba HOM05D000968 ORTHO05D003096 1.6e-09 67.4 173 28.9
GSVIVG01016232001 Vitis vinifera HOM05D000968 ORTHO05D003096 1.6e-09 67.4 234 24.8
FAN06G0091 Fragaria x ananassa HOM05D000968 ORTHO05D003096 2.1e-09 67.0 241 23.7
Potri.016G100200 Populus trichocarpa HOM05D000968 ORTHO05D003096 2.1e-09 67.0 245 24.5
SHI12701 Sapria himalayana HOM05D000968 ORTHO05D003096 2.7e-09 66.6 144 28.5
Sed0017599 Sechium edule HOM05D000968 ORTHO05D003096 3.5e-09 66.2 214 24.8
SEGI_07099 Sequoiadendron giganteum HOM05D000968 ORTHO05D003096 4.6e-09 65.9 242 27.3
ATR0680G261 Amborella trichopoda HOM05D000968 ORTHO05D003096 6.0e-09 65.5 241 23.7
Aqoxy1G00899 Aquilegia oxysepala HOM05D000968 ORTHO05D003096 6.0e-09 65.5 241 24.5
EL10As1g23092 Beta vulgaris HOM05D000968 ORTHO05D003096 6.0e-09 65.5 176 28.4
Ca_10548_v3 Cicer arietinum L. HOM05D000968 ORTHO05D003096 6.0e-09 65.5 172 25.0
Prupe.6G257900 Prunus persica HOM05D000968 ORTHO05D003096 7.8e-09 65.1 185 28.1
Zm00001eb259030 Zea mays HOM05D000968 ORTHO05D003096 7.8e-09 65.1 229 24.0
ECA247G0894 Erigeron canadensis HOM05D000968 ORTHO05D003096 1.3e-08 64.3 172 25.6
FAN06G1512 Fragaria x ananassa HOM05D000968 ORTHO05D003096 1.3e-08 64.3 246 23.6
MBI14_g04655_MAGBIO Magnolia biondii HOM05D000968 ORTHO05D003096 1.7e-08 63.9 174 26.4
CBR_g22879 Chara braunii HOM05D000968 ORTHO05D003096 2.3e-08 63.5 79 36.7
SMO296G0011 Selaginella moellendorffii HOM05D000968 ORTHO05D003096 3.0e-08 63.2 232 24.1
Zm00001eb148220 Zea mays HOM05D000968 ORTHO05D003096 3.0e-08 63.2 243 25.1
COL.COLO4_14775 Corchorus olitorius HOM05D000968 ORTHO05D003096 5.1e-08 62.4 225 24.4
Os05g0458000 Oryza sativa ssp. japonica HOM05D000968 ORTHO05D003096 5.1e-08 62.4 225 24.9
Oeu006900.3 Olea europaea HOM05D000968 ORTHO05D003096 6.6e-08 62.0 173 24.3
SGA_v2.0_scaffold126G33770 Striga asiatica HOM05D000968 ORTHO05D003096 6.6e-08 62.0 173 26.0
Cpa.g.sc53.115 Carica papaya HOM05D000968 ORTHO05D003096 2.5e-07 60.1 178 28.7
Thecc.05G036800 Theobroma cacao HOM05D000968 ORTHO05D003096 3.3e-07 59.7 219 23.3
CDE07G2078 Ceratophyllum demersum HOM05D000968 ORTHO05D003096 5.6e-07 58.9 147 29.3
Lsat_1_v5_gn_9_68260 Lactuca sativa HOM05D000968 ORTHO05D003096 2.1e-06 57.0 207 21.7
AUR62025777 Chenopodium quinoa HOM05D000968 ORTHO05D003096 3.6e-06 56.2 218 23.9
Mapoly0009s0186 Marchantia polymorpha HOM05D000968 ORTHO05D003096 3.6e-06 56.2 254 22.0
FAN10G3564 Fragaria x ananassa HOM05D000968 ORTHO05D003096 6.2e-06 55.5 186 24.7
FAN01G0168 Fragaria x ananassa HOM05D000968 ORTHO05D003096 8.1e-06 55.1 181 24.9


User provided reference genes

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