Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO146G0220 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 4.7e-169 597.8 312 100.0
SMO353G0256 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 3.4e-74 282.7 198 74.7
SMO171G0118 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 1.1e-72 277.7 201 73.6
SMO196G0079 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 2.0e-71 273.5 208 68.8
SMO198G0073 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 2.6e-34 150.2 107 62.6
SMO147G0042 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 7.1e-32 142.1 102 63.7
SMO170G0066 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 1.3e-28 131.3 101 56.4
SMO141G0106 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 4.8e-28 129.4 101 58.4
SMO198G0098 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 2.4e-27 127.1 112 50.9
ATR1127G039 Amborella trichopoda HOM05D003873 ORTHO05D004127 2.4e-19 100.5 102 44.1
Duzib114G0555 Durio zibethinus HOM05D003873 ORTHO05D004127 4.5e-18 96.3 118 39.0
Gohir.A13G006800 Gossypium hirsutum HOM05D003873 ORTHO05D004127 5.8e-18 95.9 106 41.5
Gorai.013G007200 Gossypium raimondii HOM05D003873 ORTHO05D004127 5.8e-18 95.9 106 41.5
Gohir.D13G007000 Gossypium hirsutum HOM05D003873 ORTHO05D004127 7.6e-18 95.5 106 40.6
Pp3c13_3890 Physcomitrium patens HOM05D003873 ORTHO05D004127 7.6e-18 95.5 97 40.2
Thecc.10G182600 Theobroma cacao HOM05D003873 ORTHO05D004127 2.2e-17 94.0 102 42.2
Ciclev10032511m.g Citrus clementina HOM05D003873 ORTHO05D004127 2.9e-17 93.6 118 36.4
SEGI_07333 Sequoiadendron giganteum HOM05D003873 ORTHO05D004127 2.9e-17 93.6 101 42.6
COL.COLO4_19435 Corchorus olitorius HOM05D003873 ORTHO05D004127 3.8e-17 93.2 102 42.2
PGR044G2565 Punica granatum HOM05D003873 ORTHO05D004127 3.8e-17 93.2 103 41.7
COL.COLO4_19439 Corchorus olitorius HOM05D003873 ORTHO05D004127 4.9e-17 92.8 102 42.2
Duzib128G1260 Durio zibethinus HOM05D003873 ORTHO05D004127 6.5e-17 92.4 101 40.6
Pp3c4_24790 Physcomitrium patens HOM05D003873 ORTHO05D004127 8.4e-17 92.0 117 34.2
BcaB06g29154 Brassica carinata HOM05D003873 ORTHO05D004127 1.4e-16 91.3 105 40.0
BcaB06g29155 Brassica carinata HOM05D003873 ORTHO05D004127 1.4e-16 91.3 101 41.6
CDE06G1522 Ceratophyllum demersum HOM05D003873 ORTHO05D004127 1.4e-16 91.3 100 43.0
SHI30175 Sapria himalayana HOM05D003873 ORTHO05D004127 1.4e-16 91.3 106 42.5
THA.LOC104824360 Tarenaya hassleriana HOM05D003873 ORTHO05D004127 1.4e-16 91.3 117 37.6
Carub.0004s2288 Capsella rubella HOM05D003873 ORTHO05D004127 1.9e-16 90.9 100 41.0
Carub.0004s2289 Capsella rubella HOM05D003873 ORTHO05D004127 2.5e-16 90.5 121 37.2
Eucgr.J00121 Eucalyptus grandis HOM05D003873 ORTHO05D004127 3.2e-16 90.1 124 36.3
Lsat_1_v5_gn_8_13601 Lactuca sativa HOM05D003873 ORTHO05D004127 3.2e-16 90.1 118 37.3
Thecc.10G182200 Theobroma cacao HOM05D003873 ORTHO05D004127 3.2e-16 90.1 118 36.4
TAR369G0800 Trochodendron aralioides HOM05D003873 ORTHO05D004127 3.2e-16 90.1 103 40.8
Sp4g22920 Schrenkiella parvula HOM05D003873 ORTHO05D004127 4.2e-16 89.7 117 36.8
SMO119G0134 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 4.2e-16 89.7 110 40.0
Ca_12777_v3 Cicer arietinum L. HOM05D003873 ORTHO05D004127 5.5e-16 89.4 102 41.2
Phvul.001G074800 Phaseolus vulgaris HOM05D003873 ORTHO05D004127 5.5e-16 89.4 119 34.5
Potri.013G092700 Populus trichocarpa HOM05D003873 ORTHO05D004127 5.5e-16 89.4 94 44.7
AL4G38470 Arabidopsis lyrata HOM05D003873 ORTHO05D004127 7.1e-16 89.0 105 38.1
Cfa001222 Carpinus fangiana HOM05D003873 ORTHO05D004127 7.1e-16 89.0 169 31.4
Migut.F00602 Erythranthe guttata HOM05D003873 ORTHO05D004127 7.1e-16 89.0 119 35.3
Prupe.2G262000 Prunus persica HOM05D003873 ORTHO05D004127 7.1e-16 89.0 102 39.2
AL4G38460 Arabidopsis lyrata HOM05D003873 ORTHO05D004127 9.3e-16 88.6 100 40.0
BolC4t28343H Brassica oleracea HOM05D000114 ORTHO05D004127 9.3e-16 88.6 101 41.6
Oeu027748.1 Olea europaea HOM05D003873 ORTHO05D004127 9.3e-16 88.6 105 39.0
VMungo0647G2356 Vigna mungo HOM05D003873 ORTHO05D004127 9.3e-16 88.6 102 38.2
FvH4_7g25700 Fragaria vesca HOM05D003873 ORTHO05D004127 1.2e-15 88.2 100 41.0
FAN06G3214 Fragaria x ananassa HOM05D000009 ORTHO05D000008 1.2e-15 88.2 100 41.0
AT2G40600 Arabidopsis thaliana HOM05D003873 ORTHO05D004127 1.6e-15 87.8 100 40.0
FAN03G1281 Fragaria x ananassa HOM05D003873 ORTHO05D004127 1.6e-15 87.8 100 41.0
HanXRQChr17g0560751 Helianthus annuus HOM05D003873 ORTHO05D004127 1.6e-15 87.8 117 36.8
QL08p064588 Quercus lobata HOM05D003873 ORTHO05D004127 1.6e-15 87.8 119 35.3
GSVIVG01032680001 Vitis vinifera HOM05D003873 ORTHO05D004127 1.6e-15 87.8 98 42.9
Cc02_g05430 Coffea canephora HOM05D003873 ORTHO05D004127 2.1e-15 87.4 119 34.5
Thecc.10G182400 Theobroma cacao HOM05D003873 ORTHO05D004127 2.1e-15 87.4 114 38.6
Dinv34475 Davidia involucrata HOM05D003873 ORTHO05D004127 2.7e-15 87.0 102 40.2
Gohir.D10G185525 Gossypium hirsutum HOM05D003873 ORTHO05D004127 3.5e-15 86.7 130 32.3
Gorai.011G208100 Gossypium raimondii HOM05D003873 ORTHO05D004127 3.5e-15 86.7 130 32.3
Hma1.2p1_0292F.1_g115890 Hydrangea macrophylla HOM05D003873 ORTHO05D004127 3.5e-15 86.7 107 37.4
Nn2g10324 Nelumbo nucifera HOM05D003873 ORTHO05D004127 3.5e-15 86.7 103 39.8
CARHR135690 Cardamine hirsuta HOM05D003873 ORTHO05D004127 4.6e-15 86.3 97 41.2
Cpa.g.sc19.64 Carica papaya HOM05D003873 ORTHO05D004127 4.6e-15 86.3 111 37.8
Thhalv10017560m.g Eutrema salsugineum HOM05D003873 ORTHO05D004127 4.6e-15 86.3 100 39.0
Lj5g0010993 Lotus japonicus HOM05D003873 ORTHO05D004127 4.6e-15 86.3 99 40.4
CBR_g23787 Chara braunii HOM05D003873 ORTHO05D004127 6.0e-15 85.9 97 40.2
RcHm_v2.0_Chr1g0371921 Rosa chinensis HOM05D003873 ORTHO05D004127 6.0e-15 85.9 99 40.4
arahy.Tifrunner.gnm1.ann1.HNCJ3C Arachis hypogaea HOM05D003873 ORTHO05D004127 7.9e-15 85.5 119 34.5
ECA233G5425 Erigeron canadensis HOM05D003873 ORTHO05D004127 7.9e-15 85.5 118 36.4
arahy.Tifrunner.gnm1.ann1.I2EQP5 Arachis hypogaea HOM05D003873 ORTHO05D004127 1.0e-14 85.1 104 37.5
Glyma.14G145000 Glycine max HOM05D003873 ORTHO05D004127 1.0e-14 85.1 102 36.3
SMO141G0289 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 1.0e-14 85.1 110 40.0
Lj1g0013289 Lotus japonicus HOM05D003873 ORTHO05D004127 1.3e-14 84.7 119 35.3
Nitab4.5_0002279g0070 Nicotiana tabacum HOM05D003873 ORTHO05D004127 1.3e-14 84.7 99 38.4
Sabra13G0064000 Salix brachista HOM05D003873 ORTHO05D004127 1.3e-14 84.7 87 43.7
arahy.Tifrunner.gnm1.ann1.26CUCK Arachis hypogaea HOM05D003873 ORTHO05D004127 1.8e-14 84.3 104 37.5
CAN.G203.49 Capsicum annuum HOM05D003873 ORTHO05D004127 1.8e-14 84.3 99 39.4
CARHR135710 Cardamine hirsuta HOM05D003873 ORTHO05D004127 1.8e-14 84.3 105 36.2
Medtr1g007640 Medicago truncatula HOM05D003873 ORTHO05D004127 1.8e-14 84.3 102 39.2
Sed0001367 Sechium edule HOM05D003873 ORTHO05D004127 1.8e-14 84.3 99 39.4
arahy.Tifrunner.gnm1.ann1.8SN1W1 Arachis hypogaea HOM05D003873 ORTHO05D004127 2.3e-14 84.0 117 34.2
Psat6g035920 Pisum sativum HOM05D003873 ORTHO05D004127 2.3e-14 84.0 102 39.2
Rhsim09G0185200 Rhododendron simsii HOM05D003873 ORTHO05D004127 2.3e-14 84.0 121 33.1
Hund15823 Selenicereus undatus HOM05D003873 ORTHO05D004127 2.3e-14 84.0 104 39.4
AagrBONN_evm.TU.Sc2ySwM_117.2730 Anthoceros agrestis HOM05D003873 ORTHO05D004127 3.0e-14 83.6 97 41.2
Nitab4.5_0000375g0180 Nicotiana tabacum HOM05D003873 ORTHO05D004127 3.0e-14 83.6 99 38.4
Solyc05g052260.3 Solanum lycopersicum HOM05D003873 ORTHO05D004127 3.0e-14 83.6 119 34.5
Sopen05g030800 Solanum pennellii HOM05D003873 ORTHO05D004127 3.0e-14 83.6 119 34.5
vmacro09968 Vaccinium macrocarpon HOM05D003873 ORTHO05D004127 3.0e-14 83.6 119 35.3
BcaC02g07324 Brassica carinata HOM05D000114 ORTHO05D004127 3.9e-14 83.2 97 39.2
C04p68430 Brassica napus HOM05D000114 ORTHO05D004127 3.9e-14 83.2 97 39.2
MBI03_g22825_MAGBIO Magnolia biondii HOM05D003873 ORTHO05D004127 3.9e-14 83.2 101 40.6
SMO145G0080 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 3.9e-14 83.2 168 32.7
TPR.G24518 Trifolium pratense HOM05D003873 ORTHO05D004127 3.9e-14 83.2 102 38.2
AUR62030624 Chenopodium quinoa HOM05D003873 ORTHO05D004127 5.1e-14 82.8 101 38.6
Hma1.2p1_0292F.1_g115910 Hydrangea macrophylla HOM05D003873 ORTHO05D004127 5.1e-14 82.8 101 37.6
Sp4g22930 Schrenkiella parvula HOM05D003873 ORTHO05D004127 5.1e-14 82.8 105 38.1
Sc11g0005790 Simmondsia chinensis HOM05D003873 ORTHO05D004127 5.1e-14 82.8 102 39.2
Os03g0336500 Oryza sativa ssp. japonica HOM05D003873 ORTHO05D004127 6.7e-14 82.4 88 42.0
Peaxi162Scf00167g01217 Petunia axillaris HOM05D003873 ORTHO05D004127 6.7e-14 82.4 102 37.3
PGSC0003DMG400011653 Solanum tuberosum HOM05D003873 ORTHO05D004127 6.7e-14 82.4 119 32.8
Hma1.2p1_0292F.1_g115900 Hydrangea macrophylla HOM05D003873 ORTHO05D004127 8.7e-14 82.0 110 36.4
Manes.07G140600 Manihot esculenta HOM05D003873 ORTHO05D004127 8.7e-14 82.0 97 39.2
TWI09G0384 Tripterygium wilfordii HOM05D003873 ORTHO05D004127 8.7e-14 82.0 100 39.0
A04p31040 Brassica napus HOM05D000114 ORTHO05D004127 1.1e-13 81.6 97 38.1
BraA04t18560Z Brassica rapa HOM05D000114 ORTHO05D004127 1.1e-13 81.6 97 38.1
MD01G1164200 Malus domestica HOM05D003873 ORTHO05D004127 1.1e-13 81.6 100 39.0
A05p01810 Brassica napus HOM05D003873 ORTHO05D004127 1.5e-13 81.3 100 38.0
PSO170G1346 Papaver somniferum HOM05D003873 ORTHO05D004127 1.5e-13 81.3 100 41.0
SGA_v2.0_scaffold60G20894 Striga asiatica HOM05D003873 ORTHO05D004127 1.5e-13 81.3 102 38.2
Zm00001eb016110 Zea mays HOM05D003873 ORTHO05D004127 1.5e-13 81.3 107 36.4
Atru.chr3.3508 Acer truncatum HOM05D003873 ORTHO05D004127 1.9e-13 80.9 97 43.3
Atru.chr3.3515 Acer truncatum HOM05D003873 ORTHO05D004127 1.9e-13 80.9 97 43.3
Lsat_1_v5_gn_9_122981 Lactuca sativa HOM05D003873 ORTHO05D004127 1.9e-13 80.9 103 40.8
Lj8A55T86 Lonicera japonica HOM05D003873 ORTHO05D004127 1.9e-13 80.9 102 38.2
unitig_747.g21397 Utricularia gibba HOM05D003873 ORTHO05D004127 1.9e-13 80.9 103 36.9
Aqoxy4G02389 Aquilegia oxysepala HOM05D003873 ORTHO05D004127 2.5e-13 80.5 98 38.8
MSTRG.8896 Avicennia marina HOM05D003873 ORTHO05D004127 2.5e-13 80.5 105 36.2
BcaC02g12725 Brassica carinata HOM05D003873 ORTHO05D004127 2.5e-13 80.5 100 38.0
Lalb_Chr08g0239001 Lupinus albus HOM05D003873 ORTHO05D004127 2.5e-13 80.5 99 37.4
PSO210G1471 Papaver somniferum HOM05D000620 ORTHO05D000537 2.5e-13 80.5 101 38.6
HPP92_011975 Vanilla planifolia HOM05D003873 ORTHO05D004127 2.5e-13 80.5 97 40.2
C04p02110 Brassica napus HOM05D003873 ORTHO05D004127 3.3e-13 80.1 100 38.0
BolC4t21859H Brassica oleracea HOM05D003873 ORTHO05D004127 3.3e-13 80.1 100 38.0
PSO210G0819 Papaver somniferum HOM05D000620 ORTHO05D000537 3.3e-13 80.1 126 35.7
TWI73G0123 Tripterygium wilfordii HOM05D003873 ORTHO05D004127 3.3e-13 80.1 100 38.0
CANSAT56G3412 Cannabis sativa HOM05D003873 ORTHO05D004127 4.3e-13 79.7 102 37.3
SMO119G0485 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 4.3e-13 79.7 99 39.4
Actinidia31621 Actinidia chinensis HOM05D003873 ORTHO05D004127 5.7e-13 79.3 102 37.3
AUR62024920 Chenopodium quinoa HOM05D003873 ORTHO05D004127 5.7e-13 79.3 97 38.1
CsaV3_5G010890 Cucumis sativus L. HOM05D003873 ORTHO05D004127 5.7e-13 79.3 99 38.4
PSO017G6047 Papaver somniferum HOM05D003873 ORTHO05D004127 5.7e-13 79.3 100 40.0
PSO210G0156 Papaver somniferum HOM05D000620 ORTHO05D000537 5.7e-13 79.3 101 38.6
CSS0018140 Camellia sinensis var. sinensis HOM05D003873 ORTHO05D004127 7.4e-13 79.0 101 37.6
Aqoxy4G02390 Aquilegia oxysepala HOM05D003873 ORTHO05D004127 9.7e-13 78.6 98 38.8
Atru.chr1.2930 Acer truncatum HOM05D003873 ORTHO05D004127 1.3e-12 78.2 94 38.3
Aa31LG3G1520 Aethionema arabicum HOM05D003873 ORTHO05D004127 1.6e-12 77.8 111 35.1
CiPaw.02G198500 Carya illinoinensis HOM05D003873 ORTHO05D004127 1.6e-12 77.8 100 37.0
Mapoly0093s0078 Marchantia polymorpha HOM05D003873 ORTHO05D004127 1.6e-12 77.8 118 34.7
PSO017G6038 Papaver somniferum HOM05D003873 ORTHO05D004127 1.6e-12 77.8 126 36.5
PSO210G5103 Papaver somniferum HOM05D000620 ORTHO05D000537 1.6e-12 77.8 100 39.0
PSO384G4386 Papaver somniferum HOM05D003873 ORTHO05D004127 1.6e-12 77.8 126 36.5
Atru.BG.255.p Acer truncatum HOM05D003873 ORTHO05D004127 2.8e-12 77.0 84 39.3
MELO3C020142.2 Cucumis melo HOM05D003873 ORTHO05D004127 2.8e-12 77.0 99 38.4
Ciclev10002574m.g Citrus clementina HOM05D003873 ORTHO05D004127 3.7e-12 76.6 84 42.9
PSO017G0702 Papaver somniferum HOM05D003873 ORTHO05D004127 3.7e-12 76.6 100 39.0
PSO384G3509 Papaver somniferum HOM05D003873 ORTHO05D004127 3.7e-12 76.6 100 39.0
BraA05t19179Z Brassica rapa HOM05D003873 ORTHO05D004127 1.4e-11 74.7 108 35.2
EL10Ac2g02628 Beta vulgaris HOM05D003873 ORTHO05D004127 5.3e-11 72.8 99 36.4
Manes.10G000700 Manihot esculenta HOM05D003873 ORTHO05D004127 5.3e-11 72.8 98 37.8
PRCOL_00002258 Prasinoderma coloniale HOM05D003873 ORTHO05D004127 1.2e-10 71.6 101 36.6
Ciclev10002586m.g Citrus clementina HOM05D003873 ORTHO05D004127 2.0e-10 70.9 102 38.2
Manes.10G000800 Manihot esculenta HOM05D003873 ORTHO05D004127 8.5e-09 65.5 109 33.9
Oeu004079.1 Olea europaea HOM05D003873 ORTHO05D004127 1.4e-08 64.7 76 39.5
PSO017G3604 Papaver somniferum HOM05D003873 ORTHO05D004127 7.2e-08 62.4 127 35.4
SalBow3G4343 Salvia bowleyana HOM05D003873 ORTHO05D004127 1.6e-07 61.2 141 27.0
SEGI_26560 Sequoiadendron giganteum HOM05D003873 ORTHO05D004127 3.6e-07 60.1 69 43.5
Lj1C966G3 Lonicera japonica HOM05D003873 ORTHO05D004127 1.0e-06 58.5 123 30.1
TPR.G3290 Trifolium pratense HOM05D003873 ORTHO05D004127 1.3e-06 58.2 103 34.0
CSS0002427 Camellia sinensis var. sinensis HOM05D003873 ORTHO05D004127 3.0e-06 57.0 72 38.9
CSS0021993 Camellia sinensis var. sinensis HOM05D003873 ORTHO05D004127 3.0e-06 57.0 72 38.9
FAN10G0598 Fragaria x ananassa HOM05D003873 ORTHO05D004127 5.1e-06 56.2 85 32.9


User provided reference genes

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