Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO146G0147 Selaginella moellendorffii HOM05D001353 ORTHO05D013162 4.4e-152 541.2 260 100.0
AagrBONN_evm.TU.Sc2ySwM_344.2140 Anthoceros agrestis HOM05D000207 ORTHO05D017345 8.8e-36 154.8 175 49.1
Mapoly0029s0103 Marchantia polymorpha HOM05D000207 ORTHO05D017345 1.1e-33 147.9 212 40.6
CBR_g48193 Chara braunii HOM05D001353 ORTHO05D013162 9.8e-27 124.8 222 33.3
AagrBONN_evm.TU.Sc2ySwM_228.5585 Anthoceros agrestis HOM05D001353 ORTHO05D013162 4.1e-25 119.4 222 34.7
CBR_g30159 Chara braunii HOM05D000019 ORTHO05D013162 5.4e-25 119.0 221 34.8
PRCOL_00001011 Prasinoderma coloniale HOM05D001353 ORTHO05D013162 7.0e-25 118.6 221 32.6
AagrBONN_evm.TU.Sc2ySwM_362.2049 Anthoceros agrestis HOM05D001353 ORTHO05D013162 2.7e-24 116.7 221 32.6
Pp3c22_7030 Physcomitrium patens HOM05D001353 ORTHO05D013162 7.8e-24 115.2 223 31.8
PRCOL_00006801 Prasinoderma coloniale HOM05D001353 ORTHO05D013162 1.7e-23 114.0 236 34.7
Cre16.g663200 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D024952 2.3e-23 113.6 224 37.5
SMO172G0193 Selaginella moellendorffii HOM05D001353 ORTHO05D013162 1.9e-22 110.5 230 33.0
SEGI_36398 Sequoiadendron giganteum HOM05D001353 ORTHO05D013162 3.3e-22 109.8 223 30.5
Mapoly0030s0069 Marchantia polymorpha HOM05D001353 ORTHO05D013162 4.3e-22 109.4 263 29.3
Pp3c21_4790 Physcomitrium patens HOM05D001353 ORTHO05D013162 8.9e-20 101.7 215 32.6
PRCOL_00003761 Prasinoderma coloniale HOM05D000207 ORTHO05D024952 5.8e-19 99.0 221 30.3
MCO16G083 Micromonas commoda HOM05D000207 ORTHO05D024952 3.7e-18 96.3 228 28.1
PRCOL_00002746 Prasinoderma coloniale HOM05D001353 ORTHO05D002359 4.9e-18 95.9 241 29.0
Cre12.g493250 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D024952 6.4e-18 95.5 225 30.2
Cre10.g443550 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D002359 1.1e-17 94.7 223 28.3
Cfa022620 Carpinus fangiana HOM05D001353 ORTHO05D013162 1.4e-17 94.4 233 29.2
CBR_g9064 Chara braunii HOM05D001353 ORTHO05D024952 9.2e-17 91.7 193 29.0
Haze_26803 Corylus avellana HOM05D000207 ORTHO05D017345 1.6e-16 90.9 271 25.5
Pp3c14_23970 Physcomitrium patens HOM05D000207 ORTHO05D017345 1.6e-16 90.9 106 44.3
Cre02.g076900 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D017345 3.9e-15 86.3 223 27.4
AagrBONN_evm.TU.Sc2ySwM_368.691 Anthoceros agrestis HOM05D001353 ORTHO05D002359 8.6e-15 85.1 202 28.2
Gohir.D07G007900 Gossypium hirsutum HOM05D001353 ORTHO05D002359 1.5e-14 84.3 242 27.3
GSVIVG01015338001 Vitis vinifera HOM05D001353 ORTHO05D002359 1.5e-14 84.3 232 28.0
Gorai.001G007600 Gossypium raimondii HOM05D001353 ORTHO05D002359 1.9e-14 84.0 242 27.3
SGA_v2.0_scaffold19G08755 Striga asiatica HOM05D001353 ORTHO05D002359 1.9e-14 84.0 241 27.8
MELO3C024635.2 Cucumis melo HOM05D001353 ORTHO05D002359 3.3e-14 83.2 232 27.2
Gorai.010G074600 Gossypium raimondii HOM05D001353 ORTHO05D002359 3.3e-14 83.2 234 29.5
Lsat_1_v5_gn_8_96380 Lactuca sativa HOM05D001353 ORTHO05D002359 3.3e-14 83.2 225 25.3
CsaV3_1G019530 Cucumis sativus L. HOM05D001353 ORTHO05D002359 4.3e-14 82.8 232 27.2
Gohir.D06G064000 Gossypium hirsutum HOM05D001353 ORTHO05D002359 4.3e-14 82.8 234 29.5
Medtr6g087000 Medicago truncatula HOM05D001353 ORTHO05D002359 5.6e-14 82.4 242 28.9
COL.COLO4_34797 Corchorus olitorius HOM05D001353 ORTHO05D002359 7.3e-14 82.0 242 26.9
Psat1g045440 Pisum sativum HOM05D001353 ORTHO05D002359 7.3e-14 82.0 244 29.1
Aqoxy7G01509 Aquilegia oxysepala HOM05D001353 ORTHO05D002359 9.5e-14 81.6 242 26.4
Gohir.A07G004300 Gossypium hirsutum HOM05D001353 ORTHO05D002359 9.5e-14 81.6 242 27.3
Nitab4.5_0000010g0080 Nicotiana tabacum HOM05D001353 ORTHO05D002359 9.5e-14 81.6 241 26.6
Nitab4.5_0000952g0070 Nicotiana tabacum HOM05D001353 ORTHO05D002359 9.5e-14 81.6 233 28.3
Duzib168G0382 Durio zibethinus HOM05D001353 ORTHO05D002359 1.2e-13 81.3 241 26.6
Ca_25556_v3 Cicer arietinum L. HOM05D001353 ORTHO05D002359 1.6e-13 80.9 242 28.9
SMO119G0320 Selaginella moellendorffii HOM05D001353 ORTHO05D002359 1.6e-13 80.9 227 26.9
Ciclev10007299m.g Citrus clementina HOM05D001353 ORTHO05D002359 2.1e-13 80.5 242 27.3
Thecc.09G104600 Theobroma cacao HOM05D001353 ORTHO05D002359 2.1e-13 80.5 242 26.4
EL10Ac8g18420 Beta vulgaris HOM05D001353 ORTHO05D002359 2.8e-13 80.1 241 25.3
FAN23G0742 Fragaria x ananassa HOM05D001353 ORTHO05D002359 2.8e-13 80.1 230 28.3
Gohir.A06G065400 Gossypium hirsutum HOM05D001353 ORTHO05D002359 2.8e-13 80.1 233 27.9
TAR383G0479 Trochodendron aralioides HOM05D001353 ORTHO05D002359 2.8e-13 80.1 232 28.0
Lj2g0022100 Lotus japonicus HOM05D001353 ORTHO05D002359 6.2e-13 79.0 242 29.3
THA.LOC104804013 Tarenaya hassleriana HOM05D001353 ORTHO05D002359 6.2e-13 79.0 244 29.1
arahy.Tifrunner.gnm1.ann1.MYDP5Z Arachis hypogaea HOM05D001353 ORTHO05D002359 8.0e-13 78.6 242 28.9
CSS0017342 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D002359 8.0e-13 78.6 233 27.5
FAN19G3205 Fragaria x ananassa HOM05D001353 ORTHO05D002359 8.0e-13 78.6 230 28.7
Atru.chr7.1420 Acer truncatum HOM05D001353 ORTHO05D002359 1.1e-12 78.2 242 28.1
CBR_g30157 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-12 78.2 104 36.5
FAN28G0622 Fragaria x ananassa HOM05D001353 ORTHO05D002359 1.1e-12 78.2 231 28.6
Glyma.01G146600 Glycine max HOM05D001353 ORTHO05D002359 1.1e-12 78.2 232 29.3
arahy.Tifrunner.gnm1.ann1.YNQ283 Arachis hypogaea HOM05D001353 ORTHO05D002359 1.4e-12 77.8 242 28.9
Dinv41647 Davidia involucrata HOM05D001353 ORTHO05D002359 1.4e-12 77.8 242 28.5
HanXRQChr16g0507681 Helianthus annuus HOM05D001353 ORTHO05D002359 1.4e-12 77.8 240 25.0
Manes.16G111900 Manihot esculenta HOM05D001353 ORTHO05D002359 1.4e-12 77.8 232 26.3
RcHm_v2.0_Chr2g0091381 Rosa chinensis HOM05D001353 ORTHO05D002359 1.4e-12 77.8 232 28.9
vmacro10875 Vaccinium macrocarpon HOM05D001353 ORTHO05D002359 1.4e-12 77.8 243 26.7
Aa31LG8G17000 Aethionema arabicum HOM05D001353 ORTHO05D002359 1.8e-12 77.4 238 26.9
Cpa.g.sc40.28 Carica papaya HOM05D001353 ORTHO05D002359 1.8e-12 77.4 232 27.2
Migut.K00517 Erythranthe guttata HOM05D001353 ORTHO05D002359 1.8e-12 77.4 240 26.7
FvH4_1g05740 Fragaria vesca HOM05D001353 ORTHO05D002359 1.8e-12 77.4 230 29.1
Sed0028015 Sechium edule HOM05D001353 ORTHO05D002359 1.8e-12 77.4 232 26.7
Solyc05g018300.3 Solanum lycopersicum HOM05D001353 ORTHO05D002359 1.8e-12 77.4 241 26.6
FAN26G1003 Fragaria x ananassa HOM05D001353 ORTHO05D002359 2.3e-12 77.0 230 28.3
FAN26G1973 Fragaria x ananassa HOM05D001353 ORTHO05D002359 2.3e-12 77.0 230 28.3
Lalb_Chr22g0352601 Lupinus albus HOM05D001353 ORTHO05D002359 2.3e-12 77.0 232 27.2
SalBow5G1246 Salvia bowleyana HOM05D001353 ORTHO05D002359 2.3e-12 77.0 242 25.6
SalBow5G1616 Salvia bowleyana HOM05D001353 ORTHO05D002359 2.3e-12 77.0 242 25.6
Actinidia09438 Actinidia chinensis HOM05D001353 ORTHO05D002359 3.1e-12 76.6 232 27.6
PGR142G4412 Punica granatum HOM05D001353 ORTHO05D002359 3.1e-12 76.6 232 26.3
Sopen05g015040 Solanum pennellii HOM05D001353 ORTHO05D002359 3.1e-12 76.6 241 26.6
TPR.G28826 Trifolium pratense HOM05D001353 ORTHO05D002359 3.1e-12 76.6 242 28.1
TWI34G0335 Tripterygium wilfordii HOM05D001353 ORTHO05D002359 3.1e-12 76.6 233 25.3
Sc14g0000410 Simmondsia chinensis HOM05D001353 ORTHO05D002359 4.0e-12 76.3 242 27.3
CDE05G1729 Ceratophyllum demersum HOM05D001353 ORTHO05D002359 5.2e-12 75.9 243 24.3
Os02g0281000 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D002359 5.2e-12 75.9 242 24.0
Prupe.7G224500 Prunus persica HOM05D001353 ORTHO05D002359 5.2e-12 75.9 233 26.6
BcaB03g16799 Brassica carinata HOM05D001353 ORTHO05D002359 6.8e-12 75.5 231 24.2
Oeu037985.1 Olea europaea HOM05D001353 ORTHO05D002359 6.8e-12 75.5 240 26.7
Glyma.09G194200 Glycine max HOM05D001353 ORTHO05D002359 8.9e-12 75.1 231 29.0
Peaxi162Scf00539g00036 Petunia axillaris HOM05D001353 ORTHO05D002359 8.9e-12 75.1 244 26.2
VMungo0464G0217 Vigna mungo HOM05D001353 ORTHO05D002359 8.9e-12 75.1 226 27.9
CAN.G60.8 Capsicum annuum HOM05D001353 ORTHO05D002359 1.2e-11 74.7 232 27.2
Cc06_g10150 Coffea canephora HOM05D001353 ORTHO05D002359 2.0e-11 73.9 236 27.1
Lj7C659T7 Lonicera japonica HOM05D001353 ORTHO05D002359 2.0e-11 73.9 233 25.8
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 2.0e-11 73.9 244 26.2
MCO08G292 Micromonas commoda HOM05D000207 ORTHO05D017345 2.0e-11 73.9 223 24.7
Phvul.004G169300 Phaseolus vulgaris HOM05D001353 ORTHO05D002359 2.0e-11 73.9 226 27.4
MD15G1192800 Malus domestica HOM05D001353 ORTHO05D002359 2.6e-11 73.6 242 27.7
Hma1.2p1_0945F.1_g240170 Hydrangea macrophylla HOM05D001353 ORTHO05D002359 3.4e-11 73.2 227 26.9
Hma1.2p1_0945F.1_g240180 Hydrangea macrophylla HOM05D001353 ORTHO05D002359 3.4e-11 73.2 227 26.9
BraA07t27856Z Brassica rapa HOM05D001353 ORTHO05D002359 4.4e-11 72.8 229 24.9
Cfa003217 Carpinus fangiana HOM05D001353 ORTHO05D002359 4.4e-11 72.8 234 25.2
Pp3c16_18360 Physcomitrium patens HOM05D001353 ORTHO05D002359 4.4e-11 72.8 210 24.8
AUR62010934 Chenopodium quinoa HOM05D001353 ORTHO05D002359 5.8e-11 72.4 233 24.5
Lalb_Chr24g0397361 Lupinus albus HOM05D001353 ORTHO05D002359 7.5e-11 72.0 233 27.0
Pp3c25_7050 Physcomitrium patens HOM05D001353 ORTHO05D002359 7.5e-11 72.0 207 24.6
A07p00600 Brassica napus HOM05D001353 ORTHO05D002359 9.8e-11 71.6 229 24.5
AUR62021446 Chenopodium quinoa HOM05D001353 ORTHO05D002359 9.8e-11 71.6 233 24.0
QL02p043064 Quercus lobata HOM05D001353 ORTHO05D002359 9.8e-11 71.6 233 27.0
CARHR110520 Cardamine hirsuta HOM05D001353 ORTHO05D002359 1.3e-10 71.2 241 25.7
Thhalv10001889m.g Eutrema salsugineum HOM05D001353 ORTHO05D002359 1.3e-10 71.2 237 25.7
Zm00001eb203570 Zea mays HOM05D001353 ORTHO05D002359 1.3e-10 71.2 232 23.3
C07p01090 Brassica napus HOM05D001353 ORTHO05D002359 1.7e-10 70.9 229 24.0
PSO210G1626 Papaver somniferum HOM05D001353 ORTHO05D002359 1.7e-10 70.9 234 23.5
Carub.0003s3431 Capsella rubella HOM05D001353 ORTHO05D002359 2.9e-10 70.1 241 24.5
PSO210G3200 Papaver somniferum HOM05D001353 ORTHO05D002359 2.9e-10 70.1 234 23.1
Potri.018G084900 Populus trichocarpa HOM05D001353 ORTHO05D002359 2.9e-10 70.1 233 25.8
Ah.09g230830 Amaranthus hybridus HOM05D001353 ORTHO05D002359 3.7e-10 69.7 233 23.2
BcaC06g36681 Brassica carinata HOM05D001353 ORTHO05D002359 3.7e-10 69.7 229 24.0
BolC7t40548H Brassica oleracea HOM05D001353 ORTHO05D002359 3.7e-10 69.7 229 24.0
DCAR_024695 Daucus carota HOM05D001353 ORTHO05D002359 4.9e-10 69.3 232 26.3
MD02G1058500 Malus domestica HOM05D001353 ORTHO05D002359 4.9e-10 69.3 233 25.8
Sp3g33360 Schrenkiella parvula HOM05D001353 ORTHO05D002359 6.4e-10 68.9 232 24.1
Actinidia20405 Actinidia chinensis HOM05D001353 ORTHO05D002359 8.3e-10 68.6 218 27.5
Cre03.g199050 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D017345 8.3e-10 68.6 101 36.6
Nn3g18153 Nelumbo nucifera HOM05D001353 ORTHO05D002359 8.3e-10 68.6 233 24.9
AL3G48050 Arabidopsis lyrata HOM05D001353 ORTHO05D002359 1.1e-09 68.2 241 24.9
MSTRG.26370 Avicennia marina HOM05D001353 ORTHO05D002359 1.1e-09 68.2 240 23.8
Sabra18G0073300 Salix brachista HOM05D001353 ORTHO05D002359 1.4e-09 67.8 181 26.0
ATR0315G080 Amborella trichopoda HOM05D001353 ORTHO05D002359 1.9e-09 67.4 238 25.2
AT2G20050 Arabidopsis thaliana HOM05D001353 ORTHO05D002359 1.9e-09 67.4 241 24.1
MCO16G578 Micromonas commoda HOM05D001353 ORTHO05D013162 2.4e-09 67.0 102 36.3
MCO16G530 Micromonas commoda HOM05D000207 ORTHO05D269454 2.1e-08 63.9 187 26.7
PRCOL_00004954 Prasinoderma coloniale HOM05D001353 ORTHO05D013162 2.1e-08 63.9 105 33.3
Pp3c14_23960 Physcomitrium patens HOM05D000207 ORTHO05D308439 7.8e-08 62.0 42 64.3
PRCOL_00004149 Prasinoderma coloniale HOM05D000207 ORTHO05D002370 3.9e-07 59.7 159 29.6
CsaV3_6G021270 Cucumis sativus L. HOM05D001353 ORTHO05D002359 5.0e-07 59.3 159 28.9
HPP92_005273 Vanilla planifolia HOM05D001353 ORTHO05D002359 5.0e-07 59.3 231 22.9
CiPaw.03G227500 Carya illinoinensis HOM05D001353 ORTHO05D002359 5.6e-06 55.8 109 29.4


User provided reference genes

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