Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 3.7e-216 754.6 379 100.0
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 2.2e-160 569.3 367 83.9
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 8.8e-101 371.3 354 55.9
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 4.3e-100 369.0 354 55.4
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 2.8e-99 366.3 354 54.5
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 2.8e-99 366.3 354 54.8
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 2.8e-99 366.3 354 55.4
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 2.8e-99 366.3 354 54.5
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 1.4e-98 364.0 350 55.7
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 1.4e-98 364.0 354 54.2
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 1.4e-98 364.0 354 54.5
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 1.8e-98 363.6 364 55.5
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 3.1e-98 362.8 354 54.5
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 3.1e-98 362.8 365 53.2
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 4.1e-98 362.5 354 54.0
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 4.1e-98 362.5 364 54.1
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 5.3e-98 362.1 350 55.4
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 6.9e-98 361.7 354 54.5
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 6.9e-98 361.7 354 54.5
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.2e-97 360.9 356 53.7
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.0e-97 360.1 354 54.0
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 3.4e-97 359.4 354 53.4
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 3.4e-97 359.4 350 54.0
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 4.5e-97 359.0 364 52.5
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 5.9e-97 358.6 365 52.6
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 5.9e-97 358.6 373 53.4
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 5.9e-97 358.6 365 52.9
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 7.7e-97 358.2 354 54.2
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 7.7e-97 358.2 354 54.0
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 1.0e-96 357.8 365 53.4
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 1.0e-96 357.8 365 53.4
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.7e-96 357.1 353 54.1
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 1.7e-96 357.1 354 54.0
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.9e-96 356.3 365 53.2
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 5.0e-96 355.5 354 54.0
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 5.0e-96 355.5 354 53.4
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 5.0e-96 355.5 350 56.6
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 5.0e-96 355.5 367 52.3
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 5.0e-96 355.5 365 53.2
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 6.5e-96 355.1 354 52.8
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 1.1e-95 354.4 350 54.0
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 1.4e-95 354.0 354 54.0
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.4e-95 354.0 354 55.1
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 1.9e-95 353.6 354 53.7
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 2.5e-95 353.2 367 52.0
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 3.2e-95 352.8 354 53.1
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 4.2e-95 352.4 354 52.8
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 4.2e-95 352.4 350 54.0
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 5.5e-95 352.1 350 53.1
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 9.4e-95 351.3 367 51.8
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 9.4e-95 351.3 354 53.7
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 9.4e-95 351.3 339 54.6
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 1.2e-94 350.9 354 52.5
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 1.2e-94 350.9 354 52.8
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 1.6e-94 350.5 354 53.4
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 1.6e-94 350.5 354 53.4
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 2.1e-94 350.1 364 51.9
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 2.1e-94 350.1 354 52.5
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 3.6e-94 349.4 354 52.3
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 3.6e-94 349.4 339 54.9
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 4.7e-94 349.0 354 52.3
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 4.7e-94 349.0 354 53.1
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 4.7e-94 349.0 364 51.9
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 6.1e-94 348.6 350 54.9
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 7.9e-94 348.2 354 52.8
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 7.9e-94 348.2 354 52.5
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 7.9e-94 348.2 371 51.5
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.0e-93 347.8 351 53.6
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 1.4e-93 347.4 354 51.7
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 1.4e-93 347.4 354 52.8
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 1.4e-93 347.4 350 53.4
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 3.0e-93 346.3 368 51.9
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 3.9e-93 345.9 369 50.7
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 5.1e-93 345.5 354 52.5
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 5.1e-93 345.5 354 51.7
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 8.8e-93 344.7 367 51.0
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 8.8e-93 344.7 365 51.8
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 2.6e-92 343.2 354 51.4
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 4.4e-92 342.4 367 50.1
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 9.7e-92 341.3 373 50.4
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 9.7e-92 341.3 373 50.4
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 1.7e-91 340.5 352 52.3
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.7e-91 340.5 339 54.0
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 2.2e-91 340.1 352 52.6
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.8e-91 339.7 354 52.0
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 6.3e-91 338.6 352 52.6
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 8.5e-88 328.2 354 50.0
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 1.4e-87 327.4 355 49.6
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 3.2e-87 326.2 356 50.8
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 7.2e-87 325.1 343 51.9
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 6.1e-86 322.0 381 48.8
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 8.8e-85 318.2 373 46.6
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 2.2e-83 313.5 340 52.6
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 4.1e-82 309.3 320 53.1
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 5.3e-82 308.9 348 47.1
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 1.6e-81 307.4 365 47.4
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 1.7e-80 303.9 373 45.8
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 5.0e-80 302.4 319 50.8
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 8.5e-80 301.6 308 51.6
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 5.5e-79 298.9 359 44.8
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 2.7e-78 296.6 373 45.0
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 1.2e-76 291.2 344 44.8
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.6e-76 290.0 353 44.2
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 1.7e-75 287.3 360 43.9
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.2e-75 287.0 353 43.9
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 6.3e-75 285.4 339 46.3
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.8e-74 283.9 345 45.8
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 2.4e-74 283.5 343 44.6
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 9.1e-74 281.6 352 46.0
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 5.9e-73 278.9 346 46.5
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 2.2e-72 276.9 256 57.8
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 8.5e-72 275.0 362 44.2
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 1.1e-71 274.6 352 46.0
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 7.2e-71 271.9 251 58.6
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 1.6e-70 270.8 353 41.4
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 3.5e-65 253.1 349 41.8
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 5.9e-57 225.7 257 49.4
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 1.0e-56 224.9 220 53.6
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 2.2e-51 207.2 215 52.1
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 2.2e-51 207.2 322 40.1
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 1.4e-50 204.5 350 39.1
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 3.0e-48 196.8 329 39.8
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.5e-44 184.5 207 50.2
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 1.2e-38 164.9 196 47.4
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 9.5e-31 138.7 146 50.7
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 2.8e-30 137.1 137 54.0
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 6.2e-30 136.0 117 59.0
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 4.4e-28 129.8 128 53.1
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 1.2e-25 121.7 124 51.6
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 2.4e-21 107.5 149 42.3
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 1.2e-20 105.1 175 38.9
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 4.4e-20 103.2 146 41.8
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 4.4e-20 103.2 89 58.4
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 6.4e-19 99.4 94 54.3
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 3.2e-18 97.1 90 54.4
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 7.1e-18 95.9 143 37.8
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 7.8e-17 92.4 103 48.5
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 7.8e-17 92.4 100 50.0
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 6.6e-16 89.4 88 51.1
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 1.9e-15 87.8 180 32.2
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 4.3e-15 86.7 88 50.0
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 4.3e-15 86.7 133 39.8
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 7.3e-15 85.9 77 54.5
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 1.4e-13 81.6 80 50.0
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 1.4e-13 81.6 80 50.0
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 6.9e-13 79.3 67 56.7
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 3.4e-12 77.0 77 51.9
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 9.9e-12 75.5 103 42.7
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 1.7e-11 74.7 87 44.8
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 7.1e-10 69.3 102 42.2
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 1.6e-09 68.2 108 38.0
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 2.1e-09 67.8 66 53.0
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 6.0e-09 66.2 61 52.5
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 1.3e-08 65.1 72 45.8
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 1.3e-08 65.1 72 45.8
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 1.3e-08 65.1 72 45.8
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 1.3e-08 65.1 72 45.8
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 3.9e-08 63.5 60 50.0
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 7.4e-07 59.3 72 43.1
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 1.3e-06 58.5 81 46.9
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 2.1e-06 57.8 44 59.1


User provided reference genes

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