Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 7.1e-68 260.4 123 100.0
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 2.4e-44 182.2 123 66.7
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 9.3e-44 180.3 123 68.3
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.8e-42 176.0 123 63.4
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.5e-41 172.9 123 63.4
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.5e-41 172.9 123 61.8
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.9e-41 172.6 123 63.4
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.5e-41 172.2 123 62.6
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 2.5e-41 172.2 121 62.8
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 2.5e-41 172.2 123 61.8
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.3e-41 171.8 123 62.6
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 3.3e-41 171.8 123 65.0
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 3.3e-41 171.8 123 65.0
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 4.3e-41 171.4 123 61.0
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 4.3e-41 171.4 123 61.0
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 5.6e-41 171.0 123 61.8
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 5.6e-41 171.0 123 63.4
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 7.4e-41 170.6 123 61.8
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 9.6e-41 170.2 123 60.2
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 9.6e-41 170.2 123 62.6
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 1.3e-40 169.9 123 61.0
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 1.6e-40 169.5 123 61.0
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 1.6e-40 169.5 123 61.0
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 2.1e-40 169.1 123 60.2
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 2.8e-40 168.7 123 62.6
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.8e-40 168.7 123 61.0
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 2.8e-40 168.7 123 61.0
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 3.7e-40 168.3 123 60.2
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 3.7e-40 168.3 123 61.8
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 3.7e-40 168.3 123 61.0
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 3.7e-40 168.3 125 63.2
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 3.7e-40 168.3 123 61.0
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 4.8e-40 167.9 123 62.6
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 6.2e-40 167.5 116 65.5
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 8.1e-40 167.2 123 60.2
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 8.1e-40 167.2 125 61.6
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 1.1e-39 166.8 123 61.0
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.1e-39 166.8 118 61.9
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.1e-39 166.8 123 60.2
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.1e-39 166.8 120 61.7
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.8e-39 166.0 123 61.8
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 2.4e-39 165.6 123 61.0
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.1e-39 165.2 123 61.0
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.1e-39 165.2 123 61.0
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 3.1e-39 165.2 123 60.2
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 3.1e-39 165.2 123 59.3
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 3.1e-39 165.2 123 59.3
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 4.0e-39 164.9 123 60.2
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 4.0e-39 164.9 123 60.2
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 4.0e-39 164.9 123 60.2
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 5.3e-39 164.5 123 59.3
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 5.3e-39 164.5 123 58.5
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 5.3e-39 164.5 123 59.3
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 6.9e-39 164.1 123 60.2
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 9.0e-39 163.7 123 58.5
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 9.0e-39 163.7 121 59.5
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 1.2e-38 163.3 116 63.8
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.2e-38 163.3 116 63.8
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 1.2e-38 163.3 123 60.2
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.5e-38 162.9 123 60.2
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 1.5e-38 162.9 123 58.5
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 2.0e-38 162.5 123 56.9
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 2.0e-38 162.5 112 62.5
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 2.0e-38 162.5 123 59.3
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 2.0e-38 162.5 118 64.4
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 2.0e-38 162.5 123 57.7
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 2.0e-38 162.5 123 61.0
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 2.6e-38 162.2 123 60.2
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.6e-38 162.2 123 57.7
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 2.6e-38 162.2 123 59.3
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 2.6e-38 162.2 122 58.2
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 2.6e-38 162.2 123 59.3
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 3.4e-38 161.8 123 60.2
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 3.4e-38 161.8 123 61.0
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 4.5e-38 161.4 123 56.9
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 4.5e-38 161.4 123 56.9
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 4.5e-38 161.4 123 57.7
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 7.6e-38 160.6 116 62.9
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 7.6e-38 160.6 114 64.9
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 7.6e-38 160.6 121 61.2
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 9.9e-38 160.2 123 59.3
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 1.3e-37 159.8 116 62.9
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 1.3e-37 159.8 116 62.9
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.3e-37 159.8 123 56.1
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.3e-37 159.8 123 56.9
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 1.3e-37 159.8 123 60.2
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.7e-37 159.5 123 58.5
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.7e-37 159.5 123 56.1
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.7e-37 159.5 123 56.1
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 2.2e-37 159.1 116 62.9
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 2.2e-37 159.1 123 56.9
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 2.9e-37 158.7 123 56.1
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 2.9e-37 158.7 123 58.5
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 3.8e-37 158.3 119 61.3
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 3.8e-37 158.3 116 62.1
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 3.8e-37 158.3 123 56.1
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 6.4e-37 157.5 123 57.7
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 6.4e-37 157.5 116 61.2
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 8.4e-37 157.1 123 57.7
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 8.4e-37 157.1 117 62.4
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 8.4e-37 157.1 123 58.5
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 8.4e-37 157.1 121 58.7
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 1.1e-36 156.8 116 59.5
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 1.9e-36 156.0 138 55.1
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 4.2e-36 154.8 118 61.9
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 7.1e-36 154.1 116 59.5
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 1.2e-35 153.3 114 59.6
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.6e-35 152.9 123 59.3
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 2.1e-35 152.5 111 58.6
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 3.5e-35 151.8 121 57.0
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 4.6e-35 151.4 154 48.7
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 7.9e-35 150.6 121 59.5
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 1.8e-34 149.4 135 52.6
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 2.3e-34 149.1 123 56.1
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.3e-34 149.1 112 59.8
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 2.3e-34 149.1 125 56.0
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 3.0e-34 148.7 159 47.2
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 5.1e-34 147.9 164 45.7
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 6.7e-34 147.5 124 54.8
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 1.5e-33 146.4 103 62.1
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.9e-33 146.0 121 52.9
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 4.8e-32 141.4 172 43.0
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 7.6e-30 134.0 186 39.8
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.9e-28 129.4 96 57.3
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 9.3e-28 127.1 98 56.1
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 2.7e-27 125.6 210 35.7
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 7.9e-27 124.0 88 59.1
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 5.1e-26 121.3 101 54.5
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 1.3e-24 116.7 113 54.0
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 3.1e-23 112.1 76 59.2
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 5.0e-21 104.8 76 60.5
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 5.5e-20 101.3 76 57.9
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 9.3e-20 100.5 73 58.9
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 9.3e-20 100.5 121 40.5
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 3.6e-19 98.6 75 58.7
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 3.0e-18 95.5 74 56.8
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 1.5e-17 93.2 103 41.7
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 5.9e-14 81.3 67 56.7
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 5.9e-14 81.3 66 51.5
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 2.2e-13 79.3 58 58.6
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.0e-10 70.5 50 66.0
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 1.5e-06 56.6 42 57.1


User provided reference genes

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