Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.4e-254 882.5 456 100.0
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 1.2e-192 676.8 429 81.4
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 7.1e-190 667.5 434 81.3
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 1.6e-178 629.8 413 76.8
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 3.4e-176 622.1 386 80.6
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 4.5e-176 621.7 408 77.2
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 1.7e-175 619.8 408 77.2
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 3.8e-175 618.6 408 77.2
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 6.5e-175 617.8 410 77.1
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 6.5e-175 617.8 424 75.2
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 3.2e-174 615.5 414 76.3
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 4.2e-174 615.1 414 76.3
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 9.3e-174 614.0 414 74.6
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 1.2e-173 613.6 385 79.7
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.7e-173 612.5 430 73.5
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 3.5e-173 612.1 425 74.1
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 1.8e-172 609.8 371 81.4
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 3.9e-172 608.6 424 72.9
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 3.9e-172 608.6 395 77.5
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 5.1e-172 608.2 409 74.6
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 8.7e-172 607.4 390 78.5
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.1e-171 607.1 385 78.4
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.1e-171 607.1 425 73.4
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 7.4e-171 604.4 407 75.7
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 9.7e-171 604.0 428 72.7
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 9.7e-171 604.0 432 73.8
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 1.6e-170 603.2 409 73.6
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 1.6e-170 603.2 417 73.4
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.6e-170 603.2 395 75.9
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 1.6e-170 603.2 384 78.6
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 1.6e-170 603.2 422 72.7
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.6e-170 603.2 427 72.8
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 1.6e-170 603.2 423 73.3
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 2.8e-170 602.4 424 72.9
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 3.7e-170 602.1 381 78.2
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 4.8e-170 601.7 405 75.8
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 4.8e-170 601.7 424 73.3
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 6.3e-170 601.3 416 74.8
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 1.1e-169 600.5 396 76.3
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 1.1e-169 600.5 396 76.5
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 1.4e-169 600.1 418 73.2
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 1.4e-169 600.1 396 76.0
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 1.4e-169 600.1 436 72.0
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 1.8e-169 599.7 398 76.1
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.8e-169 599.7 410 74.9
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.4e-169 599.4 395 75.4
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 2.4e-169 599.4 400 76.5
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 3.1e-169 599.0 379 78.1
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 4.1e-169 598.6 393 77.4
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 4.1e-169 598.6 423 73.0
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 4.1e-169 598.6 412 74.5
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 4.1e-169 598.6 412 74.3
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 5.3e-169 598.2 417 72.7
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 5.3e-169 598.2 432 73.1
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 5.3e-169 598.2 391 77.5
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 5.3e-169 598.2 390 76.4
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 5.3e-169 598.2 390 76.4
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 5.3e-169 598.2 379 78.6
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 5.3e-169 598.2 396 75.8
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 6.9e-169 597.8 414 73.2
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 6.9e-169 597.8 414 73.2
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 6.9e-169 597.8 417 72.7
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 6.9e-169 597.8 414 73.2
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 6.9e-169 597.8 414 73.2
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 6.9e-169 597.8 389 76.9
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 6.9e-169 597.8 379 78.6
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 9.0e-169 597.4 417 72.7
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 9.0e-169 597.4 417 72.7
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 9.0e-169 597.4 409 73.3
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 9.0e-169 597.4 391 76.5
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 1.5e-168 596.7 414 72.9
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 1.5e-168 596.7 417 72.4
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.5e-168 596.7 387 76.5
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 1.5e-168 596.7 431 71.9
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 2.6e-168 595.9 390 76.7
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 2.6e-168 595.9 371 80.1
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 2.6e-168 595.9 371 80.1
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 3.4e-168 595.5 417 72.4
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 4.5e-168 595.1 398 74.9
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 7.6e-168 594.3 414 72.7
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 7.6e-168 594.3 417 72.4
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.0e-167 594.0 382 77.2
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.0e-167 594.0 409 72.6
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.0e-167 594.0 409 72.6
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.0e-167 594.0 402 74.6
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 1.7e-167 593.2 396 75.8
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 5.0e-167 591.7 398 74.4
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 5.0e-167 591.7 406 73.2
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 5.0e-167 591.7 413 72.2
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 6.5e-167 591.3 413 71.9
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 1.1e-166 590.5 427 71.2
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 1.4e-166 590.1 415 72.5
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 1.9e-166 589.7 392 76.3
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.9e-166 589.7 384 76.8
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 1.9e-166 589.7 412 73.1
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.2e-166 589.0 403 74.4
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.2e-166 589.0 394 75.6
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 4.2e-166 588.6 431 72.4
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 4.2e-166 588.6 402 74.4
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 5.5e-166 588.2 413 71.7
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 5.5e-166 588.2 392 75.3
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 7.2e-166 587.8 437 70.5
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 7.2e-166 587.8 413 71.7
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 2.1e-165 586.3 390 74.4
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 2.7e-165 585.9 415 72.8
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 4.6e-165 585.1 384 76.3
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.6e-165 585.1 394 75.4
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 6.1e-165 584.7 394 75.4
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 6.1e-165 584.7 410 72.7
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 2.3e-164 582.8 384 75.5
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 3.0e-164 582.4 400 74.5
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 3.9e-164 582.0 395 72.9
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 5.1e-164 581.6 440 68.2
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 8.7e-164 580.9 413 71.2
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 9.7e-163 577.4 422 71.8
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.3e-162 577.0 395 71.9
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 1.3e-162 577.0 472 65.3
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 1.3e-162 577.0 396 74.5
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 3.7e-162 575.5 387 74.7
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 4.8e-162 575.1 418 71.3
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 4.8e-162 575.1 389 73.0
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 1.0e-159 567.4 505 61.2
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.9e-158 563.1 433 68.8
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 1.4e-156 557.0 531 57.6
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 3.0e-156 555.8 417 68.8
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.1e-156 555.1 394 72.6
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 1.5e-155 553.5 389 71.5
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 1.7e-154 550.1 390 71.0
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 1.8e-153 546.6 385 71.9
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 9.1e-153 544.3 383 70.2
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.3e-151 540.4 388 69.1
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 8.5e-151 537.7 351 76.6
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.5e-150 535.0 362 73.2
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 2.7e-149 532.7 388 71.1
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 8.8e-148 527.7 373 72.4
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 2.8e-146 522.7 424 66.0
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 1.2e-144 517.3 317 80.1
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 2.2e-143 513.1 308 80.8
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 7.2e-142 508.1 354 73.4
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 2.7e-141 506.1 350 72.9
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 3.6e-141 505.8 338 76.0
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 1.2e-139 500.7 333 75.4
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 1.7e-135 486.9 342 69.6
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 2.2e-135 486.5 348 73.6
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 7.2e-134 481.5 388 65.7
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 1.5e-131 473.8 412 61.4
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.2e-128 464.2 343 69.7
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 8.6e-127 458.0 292 78.8
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 6.3e-122 441.8 339 66.7
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 2.7e-120 436.4 256 82.4
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 3.8e-119 432.6 417 58.8
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 2.7e-104 383.3 268 73.5
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 9.2e-89 331.6 231 73.2
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 2.3e-87 327.0 365 49.6
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 9.9e-83 311.6 199 73.9
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 1.2e-80 304.7 387 47.3
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 2.1e-77 293.9 218 67.4
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 4.5e-75 286.2 178 81.5
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.5e-70 270.4 192 71.9
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 1.6e-64 251.1 150 80.0
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 4.9e-58 229.6 221 60.2
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.7e-56 223.8 194 59.3
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.7e-56 223.8 194 59.3
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 2.2e-53 214.2 146 73.3
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.3e-50 204.9 244 52.5
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 6.5e-42 176.0 220 55.5
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 1.0e-39 168.7 99 82.8
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 7.7e-35 152.5 114 66.7
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 4.7e-24 116.7 82 70.7
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 4.4e-22 110.2 60 88.3
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.8e-20 104.8 282 32.3
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 1.7e-18 98.2 97 57.7
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 3.8e-18 97.1 63 76.2
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 3.8e-18 97.1 63 76.2
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.7e-16 90.1 90 52.2
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 4.0e-15 87.0 73 65.8
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 1.4e-12 78.6 45 80.0
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 2.4e-12 77.8 49 75.5
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 5.4e-12 76.6 55 74.5
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 3.8e-10 70.5 42 83.3


User provided reference genes

Program Settings