Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 7.4e-38 159.8 70 100.0
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 1.4e-28 129.0 70 74.3
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 5.3e-28 127.1 70 72.9
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 2.0e-27 125.2 69 72.5
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.0e-27 125.2 70 71.4
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 2.0e-27 125.2 70 71.4
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 4.5e-27 124.0 70 71.4
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.5e-27 124.0 69 72.5
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.5e-27 124.0 69 72.5
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 4.5e-27 124.0 69 72.5
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 4.5e-27 124.0 69 72.5
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 5.9e-27 123.6 69 72.5
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 1.0e-26 122.9 69 71.0
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 1.0e-26 122.9 70 71.4
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 2.9e-26 121.3 70 72.9
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 8.5e-26 119.8 70 70.0
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 1.1e-25 119.4 69 69.6
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 1.1e-25 119.4 70 70.0
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 1.4e-25 119.0 69 69.6
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 1.9e-25 118.6 69 69.6
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 1.9e-25 118.6 70 67.1
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 2.5e-25 118.2 68 67.6
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.2e-25 117.9 69 69.6
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 5.5e-25 117.1 69 69.6
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 5.5e-25 117.1 69 65.2
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 7.2e-25 116.7 69 69.6
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 1.6e-24 115.5 69 66.7
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 2.1e-24 115.2 69 68.1
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 2.7e-24 114.8 67 70.1
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 3.6e-24 114.4 69 66.7
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 6.1e-24 113.6 69 65.2
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 7.9e-24 113.2 70 62.9
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 1.0e-23 112.8 69 65.2
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 1.8e-23 112.1 70 62.9
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 3.0e-23 111.3 69 66.7
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 3.9e-23 110.9 69 66.7
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 6.7e-23 110.2 69 63.8
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 6.7e-23 110.2 68 64.7
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.1e-22 109.4 69 65.2
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.1e-22 109.4 69 65.2
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 1.5e-22 109.0 69 63.8
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 1.5e-22 109.0 69 63.8
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 2.0e-22 108.6 70 64.3
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 2.0e-22 108.6 67 65.7
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 2.6e-22 108.2 69 65.2
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 5.7e-22 107.1 70 61.4
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 1.3e-21 105.9 69 65.2
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 1.3e-21 105.9 70 61.4
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 2.8e-21 104.8 69 58.0
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.8e-21 104.8 70 61.4
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 2.8e-21 104.8 70 61.4
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.8e-21 104.8 70 61.4
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 3.7e-21 104.4 69 63.8
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 6.3e-21 103.6 70 60.0
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 8.2e-21 103.2 68 60.3
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 8.2e-21 103.2 69 63.8
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 8.2e-21 103.2 70 62.9
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 1.1e-20 102.8 70 60.0
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.4e-20 102.4 59 67.8
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 3.1e-20 101.3 80 55.0
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 4.1e-20 100.9 69 60.9
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 4.1e-20 100.9 67 62.7
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 4.1e-20 100.9 69 60.9
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 4.1e-20 100.9 69 62.3
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 9.1e-20 99.8 69 59.4
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 9.1e-20 99.8 70 60.0
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.2e-19 99.4 69 59.4
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 1.5e-19 99.0 69 60.9
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 2.0e-19 98.6 70 57.1
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 2.6e-19 98.2 69 59.4
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 2.6e-19 98.2 69 59.4
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 3.4e-19 97.8 67 61.2
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 3.4e-19 97.8 69 60.9
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 3.4e-19 97.8 69 59.4
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 4.5e-19 97.4 69 58.0
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 7.7e-19 96.7 69 56.5
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 3.8e-18 94.4 70 60.0
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 5.0e-18 94.0 96 45.8
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 6.5e-18 93.6 69 56.5
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 6.5e-18 93.6 69 58.0
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 1.4e-17 92.4 70 55.7
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 1.4e-17 92.4 70 55.7
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 1.9e-17 92.0 69 58.0
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 3.2e-17 91.3 67 52.2
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 5.5e-17 90.5 70 55.7
Lsat_1_v5_gn_5_30800 Lactuca sativa HOM05D003537 ORTHO05D004180 5.5e-17 90.5 57 61.4
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 9.4e-17 89.7 69 53.6
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.6e-16 89.0 69 53.6
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 2.1e-16 88.6 69 53.6
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 2.1e-16 88.6 69 59.4
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 2.7e-16 88.2 83 49.4
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 3.6e-16 87.8 70 55.7
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 6.1e-16 87.0 69 55.1
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 8.0e-16 86.7 70 52.9
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 1.8e-15 85.5 69 55.1
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 2.3e-15 85.1 69 53.6
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 3.9e-15 84.3 70 51.4
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 5.2e-15 84.0 69 52.2
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 5.2e-15 84.0 70 51.4
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 5.2e-15 84.0 70 51.4
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 6.7e-15 83.6 69 52.2
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 8.8e-15 83.2 69 52.2
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 8.8e-15 83.2 69 52.2
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 1.5e-14 82.4 69 52.2
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 1.5e-14 82.4 69 52.2
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 2.0e-14 82.0 69 50.7
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 2.6e-14 81.6 68 48.5
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 2.6e-14 81.6 68 48.5
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 2.6e-14 81.6 69 50.7
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 2.6e-14 81.6 69 50.7
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 3.3e-14 81.3 69 49.3
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 3.3e-14 81.3 69 52.2
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 3.3e-14 81.3 69 52.2
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 5.7e-14 80.5 69 52.2
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 7.4e-14 80.1 69 50.7
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 1.3e-13 79.3 69 49.3
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 1.3e-13 79.3 69 50.7
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 1.7e-13 79.0 69 52.2
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 2.2e-13 78.6 69 50.7
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 2.8e-13 78.2 69 50.7
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 3.7e-13 77.8 69 49.3
MCO09G833 Micromonas commoda HOM05D001438 ORTHO05D001336 4.8e-13 77.4 50 58.0
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 6.3e-13 77.0 70 48.6
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 1.1e-12 76.3 69 50.7
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 1.1e-12 76.3 69 50.7
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 4.1e-12 74.3 69 49.3
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 4.1e-12 74.3 70 47.1
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 7.0e-12 73.6 69 47.8
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 7.0e-12 73.6 69 47.8
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 9.1e-12 73.2 69 47.8
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 9.1e-12 73.2 70 47.1
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 9.1e-12 73.2 70 45.7
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 1.2e-11 72.8 69 47.8
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 1.2e-11 72.8 69 49.3
Gohir.D08G087900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.2e-11 72.8 59 54.2
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 3.5e-11 71.2 69 46.4
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 5.9e-11 70.5 69 43.5
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 5.9e-11 70.5 69 46.4
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 1.0e-10 69.7 69 47.8
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 1.3e-10 69.3 69 46.4
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 1.3e-10 69.3 69 46.4
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 1.3e-10 69.3 69 46.4
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 1.3e-10 69.3 70 44.3
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 1.3e-10 69.3 67 44.8
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 1.7e-10 68.9 69 46.4
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 1.7e-10 68.9 69 47.8
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 1.7e-10 68.9 69 47.8
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 1.7e-10 68.9 70 42.9
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 1.7e-10 68.9 42 64.3
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 1.7e-10 68.9 69 44.9
C03p67010 Brassica napus HOM05D003537 ORTHO05D004180 2.9e-10 68.2 69 44.9
BolC3t18976H Brassica oleracea HOM05D003537 ORTHO05D004180 2.9e-10 68.2 69 44.9
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 2.9e-10 68.2 67 43.3
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.9e-10 68.2 67 43.3
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.9e-10 68.2 67 43.3
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 2.9e-10 68.2 69 44.9
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 3.8e-10 67.8 69 43.5
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 3.8e-10 67.8 69 44.9
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 3.8e-10 67.8 69 46.4
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 5.0e-10 67.4 69 44.9
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 6.5e-10 67.0 69 44.9
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 1.5e-09 65.9 69 44.9
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.5e-09 65.9 69 44.9
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.5e-09 65.9 69 44.9
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 1.5e-09 65.9 70 44.3
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 1.9e-09 65.5 45 55.6
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 2.5e-09 65.1 69 43.5
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 3.2e-09 64.7 67 43.3
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 3.2e-09 64.7 67 43.3
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 4.2e-09 64.3 69 44.9
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 9.4e-09 63.2 67 43.3
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 9.4e-09 63.2 69 43.5
Gohir.A10G061300 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.3e-07 58.5 52 44.2
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 4.0e-07 57.8 43 53.5
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 8.8e-07 56.6 42 54.8
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.6e-06 55.1 42 50.0
CSS0006865 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 4.4e-06 54.3 33 63.6
CSS0026750 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 4.4e-06 54.3 33 63.6
Sabra18G0060200 Salix brachista HOM05D003537 ORTHO05D004180 9.7e-06 53.1 95 35.8


User provided reference genes

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