Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 1.0e-154 550.1 284 100.0
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 3.2e-71 272.7 289 50.9
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 4.7e-67 258.8 296 49.3
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 9.9e-65 251.1 286 47.6
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 9.3e-63 244.6 296 44.3
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 1.2e-62 244.2 297 45.8
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.7e-62 243.0 296 44.6
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 1.0e-61 241.1 296 44.9
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 1.7e-61 240.4 320 42.5
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 1.7e-61 240.4 298 44.3
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 5.1e-61 238.8 297 43.4
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 1.9e-60 236.9 296 43.9
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 1.9e-60 236.9 297 45.5
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 2.5e-60 236.5 295 46.4
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 3.3e-60 236.1 297 43.4
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 3.3e-60 236.1 296 44.3
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 5.6e-60 235.3 298 44.6
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 5.6e-60 235.3 291 45.4
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 5.6e-60 235.3 298 44.6
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 7.3e-60 235.0 294 44.2
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 7.3e-60 235.0 297 44.4
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 9.6e-60 234.6 290 44.5
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 1.6e-59 233.8 291 43.6
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 1.6e-59 233.8 292 46.2
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 1.6e-59 233.8 300 42.7
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 2.1e-59 233.4 298 43.0
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 2.8e-59 233.0 297 43.1
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 2.8e-59 233.0 292 42.5
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 6.2e-59 231.9 319 42.3
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 8.1e-59 231.5 297 43.8
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 8.1e-59 231.5 297 42.4
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 1.1e-58 231.1 298 45.3
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.4e-58 230.7 292 41.8
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 1.8e-58 230.3 297 44.4
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 1.8e-58 230.3 257 47.9
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 3.1e-58 229.6 290 45.9
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 3.1e-58 229.6 312 41.7
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 4.0e-58 229.2 289 44.3
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 4.0e-58 229.2 291 45.7
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 6.9e-58 228.4 293 43.0
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 6.9e-58 228.4 302 44.4
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 9.0e-58 228.0 315 41.9
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 9.0e-58 228.0 293 43.3
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 9.0e-58 228.0 299 42.5
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 1.2e-57 227.6 300 42.3
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 1.2e-57 227.6 298 44.0
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 1.5e-57 227.3 290 43.1
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 1.5e-57 227.3 303 42.6
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 1.5e-57 227.3 298 42.6
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 2.0e-57 226.9 292 41.8
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 2.0e-57 226.9 301 42.2
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 2.6e-57 226.5 315 42.2
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 2.6e-57 226.5 292 43.2
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 3.4e-57 226.1 298 42.6
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 4.4e-57 225.7 296 41.2
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 4.4e-57 225.7 246 47.6
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 4.4e-57 225.7 298 41.9
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 4.4e-57 225.7 241 48.1
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 5.8e-57 225.3 301 43.2
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 7.6e-57 224.9 302 41.7
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 3.8e-56 222.6 291 44.3
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 4.9e-56 222.2 296 43.2
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 4.9e-56 222.2 289 41.9
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 6.4e-56 221.9 302 42.4
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 1.4e-55 220.7 291 43.0
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 1.9e-55 220.3 299 43.1
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 4.2e-55 219.2 297 41.4
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 5.4e-55 218.8 296 41.9
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 1.2e-54 217.6 300 42.7
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 1.2e-54 217.6 293 43.3
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 2.1e-54 216.9 290 41.0
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 2.7e-54 216.5 270 43.7
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 2.7e-54 216.5 222 48.6
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 2.7e-54 216.5 296 42.6
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 2.7e-54 216.5 292 43.2
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 7.9e-54 214.9 292 42.5
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 7.9e-54 214.9 290 41.4
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 7.9e-54 214.9 292 42.5
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 7.9e-54 214.9 300 41.0
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 7.9e-54 214.9 291 41.2
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 2.3e-53 213.4 290 42.8
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 2.3e-53 213.4 293 42.7
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 8.7e-53 211.5 291 43.0
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 2.5e-52 209.9 225 47.6
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 3.3e-52 209.5 308 39.6
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 3.3e-52 209.5 326 39.3
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 4.3e-52 209.1 328 37.5
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.6e-51 207.2 294 39.8
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 3.6e-51 206.1 297 40.4
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 8.1e-51 204.9 323 38.4
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 1.8e-50 203.8 225 48.0
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 1.7e-48 197.2 327 38.5
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 2.4e-47 193.4 261 41.8
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 9.3e-47 191.4 297 39.4
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 3.3e-44 183.0 237 42.6
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 4.8e-43 179.1 211 45.5
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 6.2e-43 178.7 290 39.0
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 6.9e-42 175.3 289 36.7
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 4.9e-40 169.1 168 51.2
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 1.9e-39 167.2 282 34.8
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 4.2e-39 166.0 172 50.6
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 1.3e-37 161.0 172 51.2
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 2.1e-35 153.7 173 46.8
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 5.5e-31 139.0 239 36.0
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 4.3e-28 129.4 171 43.9
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 4.8e-27 125.9 192 38.0
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.0e-25 120.6 271 32.8
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 5.9e-25 119.0 206 33.0
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 2.9e-24 116.7 122 52.5
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.2e-22 111.3 172 37.8
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 1.6e-22 110.9 164 42.1
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 3.9e-21 106.3 115 47.8
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 4.8e-19 99.4 187 37.4
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.0e-17 94.0 126 46.8
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.0e-17 94.0 126 46.8
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 2.2e-16 90.5 97 56.7
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 1.6e-14 84.3 133 37.6
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.7e-14 83.6 128 37.5
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 4.7e-14 82.8 117 36.8
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 2.6e-12 77.0 86 54.7
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 8.2e-11 72.0 76 47.4
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 5.3e-10 69.3 130 33.8
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 6.5e-08 62.4 81 38.3
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 8.5e-08 62.0 62 43.5
CBR_g38389 Chara braunii HOM05D005646 ORTHO05D006828 4.7e-06 56.2 137 29.9


User provided reference genes

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