Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.2e-289 999.2 515 100.0
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 3.4e-71 273.5 463 37.1
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 6.6e-59 232.6 450 34.9
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 2.1e-57 227.6 459 35.5
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.6e-57 226.9 536 32.8
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.6e-52 209.9 534 31.3
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.6e-50 203.0 457 33.5
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 5.2e-48 196.4 437 31.6
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 2.0e-47 194.5 438 31.1
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 3.4e-47 193.7 443 31.4
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.7e-46 191.4 445 32.4
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.8e-46 190.3 538 31.2
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 3.8e-46 190.3 538 31.2
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 1.1e-45 188.7 452 31.0
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.1e-45 188.7 447 30.9
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 2.4e-45 187.6 442 32.8
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 3.2e-45 187.2 435 32.6
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 5.4e-45 186.4 434 31.6
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 5.4e-45 186.4 438 32.6
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 7.1e-45 186.0 437 30.7
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.2e-44 185.3 352 33.8
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 1.6e-44 184.9 438 31.1
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 2.7e-44 184.1 530 29.6
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 6.0e-44 183.0 436 31.9
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 6.0e-44 183.0 438 32.0
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 7.8e-44 182.6 440 32.0
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 7.8e-44 182.6 436 31.9
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 7.8e-44 182.6 437 32.0
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 1.0e-43 182.2 443 32.3
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.7e-43 181.4 452 31.9
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 3.9e-43 180.3 431 31.6
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 5.1e-43 179.9 436 30.0
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 5.1e-43 179.9 453 30.9
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 8.7e-43 179.1 444 31.1
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 1.1e-42 178.7 437 31.8
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.5e-42 178.3 448 31.0
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 2.5e-42 177.6 550 29.3
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 2.5e-42 177.6 447 30.4
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.3e-42 177.2 545 30.5
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 3.3e-42 177.2 440 32.5
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 3.3e-42 177.2 458 29.9
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 4.3e-42 176.8 424 33.0
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 1.3e-41 175.3 410 31.7
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.3e-41 175.3 439 30.8
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 1.3e-41 175.3 434 30.6
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 1.3e-41 175.3 458 30.1
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 1.6e-41 174.9 449 30.5
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 2.1e-41 174.5 443 30.2
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 2.8e-41 174.1 563 29.8
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 3.6e-41 173.7 443 30.5
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 4.8e-41 173.3 435 31.0
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 6.2e-41 172.9 539 28.0
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 1.1e-40 172.2 438 30.6
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 1.8e-40 171.4 432 31.2
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 2.4e-40 171.0 443 30.2
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 2.4e-40 171.0 437 30.0
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 4.0e-40 170.2 402 31.6
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 4.0e-40 170.2 441 30.6
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 6.9e-40 169.5 462 30.5
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 6.9e-40 169.5 436 30.7
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 6.9e-40 169.5 543 28.2
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 9.0e-40 169.1 354 32.8
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 1.2e-39 168.7 440 29.5
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 1.2e-39 168.7 447 29.3
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 1.5e-39 168.3 435 29.7
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.5e-39 168.3 438 30.6
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 2.0e-39 167.9 464 30.6
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.0e-39 167.9 437 31.1
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 2.0e-39 167.9 437 31.1
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 2.6e-39 167.5 444 30.2
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 2.6e-39 167.5 441 30.6
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 2.6e-39 167.5 444 29.1
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.6e-39 167.5 438 30.4
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.6e-39 167.5 438 30.4
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 3.4e-39 167.2 403 31.8
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 4.4e-39 166.8 438 30.6
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.8e-39 166.4 433 30.9
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 9.9e-39 165.6 440 30.9
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 9.9e-39 165.6 438 30.1
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.3e-38 165.2 407 32.9
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 1.3e-38 165.2 434 29.3
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 1.3e-38 165.2 454 30.6
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 2.9e-38 164.1 441 29.3
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 3.8e-38 163.7 357 33.9
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 4.9e-38 163.3 450 29.8
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 4.9e-38 163.3 445 30.8
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 4.9e-38 163.3 444 30.4
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 6.4e-38 162.9 449 28.3
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 6.4e-38 162.9 355 31.5
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 6.4e-38 162.9 442 30.3
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 1.9e-37 161.4 434 31.3
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 3.2e-37 160.6 458 29.0
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 3.2e-37 160.6 446 29.8
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 3.2e-37 160.6 444 30.2
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 9.3e-37 159.1 354 30.8
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 9.3e-37 159.1 390 31.3
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 2.1e-36 157.9 395 31.4
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 3.5e-36 157.1 456 30.0
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 3.5e-36 157.1 437 30.7
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 1.0e-35 155.6 441 31.1
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.3e-35 155.2 353 31.4
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 3.0e-35 154.1 357 31.7
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 3.9e-35 153.7 456 29.6
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 5.1e-35 153.3 440 28.9
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.1e-34 152.1 441 28.3
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 1.9e-34 151.4 448 29.0
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 7.3e-34 149.4 417 27.3
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 7.3e-34 149.4 445 28.5
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 2.1e-33 147.9 444 28.2
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 8.1e-33 146.0 361 28.3
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.1e-32 145.6 361 28.0
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.4e-32 145.2 409 28.9
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 2.4e-32 144.4 436 28.2
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 5.3e-32 143.3 467 28.3
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 5.3e-32 143.3 458 27.1
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 5.3e-32 143.3 414 28.0
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 5.3e-32 143.3 435 27.4
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 1.5e-31 141.7 425 26.6
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 1.5e-31 141.7 405 28.1
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 5.8e-31 139.8 443 28.2
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 5.8e-31 139.8 430 28.4
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 2.9e-30 137.5 463 27.2
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 4.9e-30 136.7 450 28.4
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 4.9e-30 136.7 388 29.1
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 2.4e-29 134.4 430 27.9
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 3.2e-29 134.0 463 27.0
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 2.1e-28 131.3 440 28.2
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 4.6e-28 130.2 339 31.3
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 4.3e-26 123.6 216 35.6
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 2.8e-25 120.9 462 26.0
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 3.7e-25 120.6 210 35.2
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 1.1e-24 119.0 216 34.7
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 5.3e-24 116.7 215 35.3
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 9.0e-24 115.9 376 27.7
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 9.0e-24 115.9 371 27.8
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.7e-22 111.7 368 29.1
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 4.2e-21 107.1 295 29.8
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.8e-19 101.7 216 30.1
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 5.1e-19 100.1 190 32.6
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 6.7e-19 99.8 161 35.4
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 6.7e-19 99.8 161 35.4
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 1.1e-18 99.0 353 25.5
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 5.7e-18 96.7 192 31.8
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 2.4e-16 91.3 168 33.3
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 4.5e-15 87.0 177 33.9
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 1.9e-13 81.6 75 48.0
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 3.2e-13 80.9 176 31.2
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 5.5e-13 80.1 155 32.9
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 7.9e-12 76.3 151 31.8
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.9e-10 71.6 168 31.0
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 2.5e-10 71.2 144 31.9
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 6.9e-08 63.2 136 30.9
Ciclev10001078m.g Citrus clementina HOM05D003906 ORTHO05D004776 2.0e-07 61.6 132 32.6
MELO3C022219.2 Cucumis melo HOM05D003906 ORTHO05D004776 5.9e-07 60.1 123 31.7
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 7.7e-07 59.7 120 31.7
Gohir.D09G112300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 1.3e-06 58.9 122 32.8
Gorai.006G130100 Gossypium raimondii HOM05D003906 ORTHO05D004776 1.3e-06 58.9 122 32.8
Gohir.A09G115500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 1.7e-06 58.5 122 32.8
BcaB01g02792 Brassica carinata HOM05D003906 ORTHO05D004776 2.2e-06 58.2 132 32.6
CsaV3_5G040450 Cucumis sativus L. HOM05D003906 ORTHO05D004776 2.2e-06 58.2 123 30.9
AL6G42970 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 2.9e-06 57.8 125 33.6
CSS0005180 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 2.9e-06 57.8 122 35.2
CSS0022245 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 2.9e-06 57.8 122 35.2
CSS0049725 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 2.9e-06 57.8 122 35.2
DCAR_001451 Daucus carota HOM05D003906 ORTHO05D004776 2.9e-06 57.8 109 35.8
AT4G09340 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 5.0e-06 57.0 134 33.6
MSTRG.1555 Avicennia marina HOM05D003906 ORTHO05D004776 5.0e-06 57.0 122 33.6
Atru.chr2.1825 Acer truncatum HOM05D003906 ORTHO05D004776 6.5e-06 56.6 123 30.9
C03p34490 Brassica napus HOM05D003906 ORTHO05D004776 8.5e-06 56.2 134 33.6
Cfa012932 Carpinus fangiana HOM05D003906 ORTHO05D000991 8.5e-06 56.2 123 30.9
Cc10_g10260 Coffea canephora HOM05D003906 ORTHO05D004776 8.5e-06 56.2 125 32.0
SalBow7G1596 Salvia bowleyana HOM05D003906 ORTHO05D004776 8.5e-06 56.2 125 34.4


User provided reference genes

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