Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 0.0e+00 1141.7 547 100.0
SMO145G0071 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 2.1e-71 274.2 350 50.3
SMO145G0074 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 2.1e-71 274.2 350 50.3
SMO145G0088 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 2.1e-71 274.2 350 50.3
SMO145G0134 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 2.1e-71 274.2 350 50.3
SMO145G0247 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 2.1e-71 274.2 350 50.3
SMO139G0116 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.4e-70 271.6 507 41.2
SMO139G0004 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.8e-70 271.2 350 49.4
SMO139G0015 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.8e-70 271.2 350 49.4
SMO139G0091 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.8e-70 271.2 350 49.4
SMO139G0109 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.8e-70 271.2 350 49.4
SMO352G0031 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.8e-70 271.2 345 50.1
SMO139G0066 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 2.3e-70 270.8 350 49.4
SMO139G0033 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 6.8e-70 269.2 350 49.4
SMO145G0280 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.2e-69 268.5 350 49.1
SMO139G0052 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.5e-69 268.1 350 48.9
SMO139G0027 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 4.4e-69 266.5 350 48.9
SMO139G0031 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.1e-67 261.9 329 51.4
SMO145G0231 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.8e-67 261.2 350 48.3
SMO180G0020 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 2.4e-67 260.8 350 48.6
SMO340G0189 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 3.1e-67 260.4 350 48.3
SMO145G0056 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 4.1e-67 260.0 350 48.0
SMO139G0144 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 5.9e-66 256.1 323 49.8
SMO347G0401 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 7.2e-64 249.2 347 47.3
SMO353G0215 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 2.0e-58 231.1 362 43.1
SMO145G0053 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 7.3e-40 169.5 117 73.5
SMO115G0013 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 4.7e-39 166.8 289 41.5
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 1.3e-33 148.7 298 39.9
SMO166G0051 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 6.6e-33 146.4 303 38.3
SMO145G0062 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.1e-30 139.0 104 67.3
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 1.9e-19 101.7 170 40.0
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.3e-17 94.7 293 29.0
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.3e-17 94.7 293 29.0
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 7.3e-16 89.7 191 37.2
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 2.1e-15 88.2 298 29.2
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 2.8e-15 87.8 165 34.5
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 3.6e-15 87.4 295 28.1
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 4.8e-15 87.0 292 29.5
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 4.8e-15 87.0 292 29.5
SMO347G0642 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 4.8e-15 87.0 200 37.0
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 6.2e-15 86.7 292 28.1
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 8.1e-15 86.3 290 28.3
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 1.1e-14 85.9 292 27.4
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 3.1e-14 84.3 291 26.8
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 3.1e-14 84.3 294 27.6
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 4.0e-14 84.0 294 27.6
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 4.0e-14 84.0 298 27.2
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 4.0e-14 84.0 341 27.3
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 1.5e-13 82.0 292 28.1
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 1.5e-13 82.0 305 25.6
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 2.6e-13 81.3 319 27.3
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 3.4e-13 80.9 316 27.5
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 4.5e-13 80.5 295 27.1
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 4.5e-13 80.5 298 27.5
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 4.5e-13 80.5 290 27.2
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 5.8e-13 80.1 299 28.8
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 5.8e-13 80.1 260 26.9
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 9.9e-13 79.3 290 26.6
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 9.9e-13 79.3 292 26.7
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 9.9e-13 79.3 293 27.0
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 9.9e-13 79.3 292 27.4
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 1.3e-12 79.0 293 27.0
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 1.3e-12 79.0 261 27.6
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 1.3e-12 79.0 298 27.9
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 1.3e-12 79.0 298 26.8
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 1.3e-12 79.0 293 25.9
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.7e-12 78.6 299 28.4
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 1.7e-12 78.6 288 25.3
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 2.2e-12 78.2 295 27.5
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 2.2e-12 78.2 296 27.0
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 2.2e-12 78.2 292 28.4
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 2.2e-12 78.2 293 27.6
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 2.9e-12 77.8 293 26.6
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 3.8e-12 77.4 316 26.9
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 3.8e-12 77.4 290 27.2
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 3.8e-12 77.4 292 26.4
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 4.9e-12 77.0 294 27.9
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 4.9e-12 77.0 288 27.1
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 6.4e-12 76.6 286 27.3
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 6.4e-12 76.6 291 27.5
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 8.4e-12 76.3 291 26.1
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 1.1e-11 75.9 305 24.9
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 1.1e-11 75.9 291 25.4
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 1.4e-11 75.5 291 25.8
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 1.4e-11 75.5 299 26.4
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 1.9e-11 75.1 291 25.1
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 1.9e-11 75.1 291 25.1
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 1.9e-11 75.1 289 26.0
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 2.4e-11 74.7 291 26.5
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 2.4e-11 74.7 286 28.3
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.2e-11 74.3 290 28.3
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.2e-11 74.3 290 28.3
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 3.2e-11 74.3 289 27.3
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 3.2e-11 74.3 294 27.9
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 4.2e-11 73.9 291 25.1
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 4.2e-11 73.9 294 25.5
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 4.2e-11 73.9 293 25.3
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 5.4e-11 73.6 298 24.5
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 7.1e-11 73.2 293 25.9
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 7.1e-11 73.2 330 23.6
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 1.2e-10 72.4 291 26.1
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 1.6e-10 72.0 290 27.9
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 1.6e-10 72.0 290 24.5
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 1.6e-10 72.0 302 25.5
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 2.1e-10 71.6 291 25.8
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 3.5e-10 70.9 290 25.5
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 4.6e-10 70.5 291 24.1
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 6.0e-10 70.1 290 26.9
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 7.9e-10 69.7 290 24.1
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 1.0e-09 69.3 290 25.5
SMO364G0644 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.3e-09 68.9 35 82.9
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 1.8e-09 68.6 261 24.9
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 1.8e-09 68.6 290 25.9
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 1.8e-09 68.6 52 57.7
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 2.3e-09 68.2 260 26.2
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 3.0e-09 67.8 44 68.2
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 3.0e-09 67.8 297 25.6
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 3.9e-09 67.4 290 24.1
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 3.9e-09 67.4 46 63.0
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 6.7e-09 66.6 298 25.2
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 6.7e-09 66.6 44 72.7
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 8.7e-09 66.2 45 64.4
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 8.7e-09 66.2 88 46.6
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 8.7e-09 66.2 46 63.0
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 8.7e-09 66.2 44 65.9
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 8.7e-09 66.2 45 64.4
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 1.1e-08 65.9 44 70.5
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 1.1e-08 65.9 51 56.9
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 1.5e-08 65.5 89 46.1
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 1.5e-08 65.5 44 70.5
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 1.9e-08 65.1 44 68.2
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 1.9e-08 65.1 44 68.2
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 5.6e-08 63.5 88 43.2
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 7.4e-08 63.2 45 57.8
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 9.6e-08 62.8 89 42.7
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 9.6e-08 62.8 52 53.8
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 1.6e-07 62.0 46 58.7
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 1.6e-07 62.0 45 60.0
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 2.8e-07 61.2 45 62.2
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 3.7e-07 60.8 75 44.0
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 2.4e-06 58.2 43 55.8


User provided reference genes

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