Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 1.2e-52 209.5 101 100.0
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 1.7e-14 82.8 101 41.6
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 2.2e-14 82.4 110 40.0
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 3.7e-14 81.6 101 42.6
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 1.1e-13 80.1 109 39.4
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 1.4e-13 79.7 89 46.1
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 1.4e-13 79.7 104 40.4
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 1.8e-13 79.3 109 43.1
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 1.8e-13 79.3 101 43.6
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 2.4e-13 79.0 93 43.0
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 2.4e-13 79.0 102 41.2
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 3.1e-13 78.6 89 44.9
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 3.1e-13 78.6 92 44.6
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 4.1e-13 78.2 96 41.7
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 4.1e-13 78.2 108 38.0
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 9.1e-13 77.0 95 43.2
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 9.1e-13 77.0 103 39.8
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 1.2e-12 76.6 102 39.2
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.2e-12 76.6 89 42.7
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.2e-12 76.6 89 42.7
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 1.2e-12 76.6 102 39.2
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.6e-12 76.3 94 43.6
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 2.6e-12 75.5 89 44.9
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.6e-12 75.5 110 38.2
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 3.5e-12 75.1 101 36.6
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 4.5e-12 74.7 102 38.2
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 4.5e-12 74.7 91 42.9
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 4.5e-12 74.7 93 44.1
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 5.9e-12 74.3 89 42.7
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 5.9e-12 74.3 102 38.2
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 7.7e-12 73.9 93 38.7
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 1.0e-11 73.6 94 37.2
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 1.0e-11 73.6 89 39.3
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.0e-11 73.6 102 38.2
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.7e-11 72.8 103 38.8
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 2.2e-11 72.4 89 40.4
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 2.2e-11 72.4 102 38.2
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 2.2e-11 72.4 103 38.8
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 2.9e-11 72.0 92 41.3
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 3.8e-11 71.6 101 38.6
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 3.8e-11 71.6 101 40.6
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 3.8e-11 71.6 102 38.2
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 3.8e-11 71.6 96 43.8
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 3.8e-11 71.6 92 41.3
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 3.8e-11 71.6 103 37.9
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 5.0e-11 71.2 95 40.0
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 6.5e-11 70.9 103 39.8
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 6.5e-11 70.9 89 44.9
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 6.5e-11 70.9 95 40.0
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 8.5e-11 70.5 103 40.8
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 8.5e-11 70.5 90 41.1
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 1.1e-10 70.1 94 41.5
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.5e-10 69.7 94 38.3
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 1.5e-10 69.7 94 38.3
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 1.5e-10 69.7 93 37.6
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 1.5e-10 69.7 90 42.2
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 1.5e-10 69.7 107 39.3
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.5e-10 69.7 97 39.2
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 1.5e-10 69.7 103 37.9
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 1.9e-10 69.3 106 39.6
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.5e-10 68.9 101 34.7
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.5e-10 68.9 93 43.0
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 3.2e-10 68.6 104 38.5
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 3.2e-10 68.6 104 38.5
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 3.2e-10 68.6 107 34.6
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 4.2e-10 68.2 106 37.7
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 5.5e-10 67.8 88 43.2
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 5.5e-10 67.8 58 55.2
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 5.5e-10 67.8 104 36.5
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 5.5e-10 67.8 103 34.0
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 7.2e-10 67.4 89 40.4
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 7.2e-10 67.4 89 40.4
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 7.2e-10 67.4 89 40.4
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 7.2e-10 67.4 91 42.9
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 9.4e-10 67.0 93 41.9
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 9.4e-10 67.0 60 51.7
SMO144G0014 Selaginella moellendorffii HOM05D000504 ORTHO05D000403 1.2e-09 66.6 42 81.0
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 1.2e-09 66.6 93 39.8
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 2.1e-09 65.9 104 35.6
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 2.7e-09 65.5 103 36.9
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 3.6e-09 65.1 93 38.7
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 4.7e-09 64.7 120 34.2
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 4.7e-09 64.7 93 43.0
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 6.1e-09 64.3 89 39.3
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 8.0e-09 63.9 90 38.9
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 8.0e-09 63.9 97 36.1
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 8.0e-09 63.9 101 37.6
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 1.0e-08 63.5 93 43.0
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 1.0e-08 63.5 99 36.4
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 1.0e-08 63.5 101 36.6
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 1.4e-08 63.2 90 42.2
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 1.4e-08 63.2 103 35.9
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.8e-08 62.8 95 36.8
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 2.3e-08 62.4 89 38.2
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 2.3e-08 62.4 103 33.0
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 2.3e-08 62.4 93 37.6
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 3.0e-08 62.0 105 39.0
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 3.0e-08 62.0 90 38.9
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 5.2e-08 61.2 102 33.3
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 8.8e-08 60.5 91 37.4
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 2.0e-07 59.3 90 38.9
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.0e-07 59.3 90 38.9
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.0e-07 59.3 90 38.9
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 2.0e-07 59.3 90 40.0
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 2.0e-07 59.3 114 36.0
AagrBONN_evm.TU.Sc2ySwM_228.4794 Anthoceros agrestis HOM05D004436 ORTHO05D005179 2.6e-07 58.9 57 50.9
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.6e-07 58.9 90 38.9
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 4.4e-07 58.2 100 33.0
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 5.7e-07 57.8 91 37.4
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 5.7e-07 57.8 94 37.2
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 7.5e-07 57.4 100 33.0
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 7.5e-07 57.4 95 34.7
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 9.7e-07 57.0 96 36.5
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 9.7e-07 57.0 98 37.8
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 1.3e-06 56.6 91 35.2
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.2e-06 55.8 90 37.8
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 2.8e-06 55.5 92 40.2
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 6.3e-06 54.3 102 29.4
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.3e-06 54.3 91 37.4
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 8.2e-06 53.9 94 37.2


User provided reference genes

Program Settings