Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO144G0053 Selaginella moellendorffii HOM05D004181 ORTHO05D005610 3.3e-284 981.1 514 100.0
AagrBONN_evm.TU.Sc2ySwM_117.2942 Anthoceros agrestis HOM05D004181 ORTHO05D005610 3.2e-178 629.0 532 61.7
Mapoly0072s0051 Marchantia polymorpha HOM05D004181 ORTHO05D005610 1.9e-175 619.8 526 62.5
Pp3c14_3850 Physcomitrium patens HOM05D004181 ORTHO05D005610 3.1e-173 612.5 526 61.0
SEGI_19119 Sequoiadendron giganteum HOM05D004181 ORTHO05D005610 1.2e-161 573.9 529 58.0
Pp3c2_16690 Physcomitrium patens HOM05D004181 ORTHO05D005610 1.7e-160 570.1 527 57.3
ATR0706G144 Amborella trichopoda HOM05D004181 ORTHO05D005610 1.2e-140 504.2 526 52.3
Nn3g21283 Nelumbo nucifera HOM05D004181 ORTHO05D005610 2.1e-137 493.4 527 50.7
COL.COLO4_13939 Corchorus olitorius HOM05D004181 ORTHO05D005610 3.5e-137 492.7 527 49.7
TAR633G0339 Trochodendron aralioides HOM05D004181 ORTHO05D005610 5.1e-136 488.8 527 49.9
Aqoxy5G00623 Aquilegia oxysepala HOM05D004181 ORTHO05D005610 4.3e-135 485.7 531 51.2
Duzib151G0672 Durio zibethinus HOM05D004181 ORTHO05D005610 1.6e-134 483.8 527 48.8
Thecc.04G276100 Theobroma cacao HOM05D004181 ORTHO05D005610 3.7e-134 482.6 527 48.6
Sabra08G0148900 Salix brachista HOM05D004181 ORTHO05D005610 5.3e-133 478.8 492 50.0
CSS0036329 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 4.5e-132 475.7 526 48.3
Potri.008G195800 Populus trichocarpa HOM05D004181 ORTHO05D005610 4.5e-132 475.7 492 50.0
QL06p007241 Quercus lobata HOM05D004181 ORTHO05D005610 5.8e-132 475.3 527 49.1
TWI09G1497 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 5.8e-132 475.3 527 48.8
CiPaw.01G154000 Carya illinoinensis HOM05D004181 ORTHO05D005610 1.3e-131 474.2 492 50.0
Dinv44435 Davidia involucrata HOM05D004181 ORTHO05D005610 1.7e-131 473.8 527 49.0
Gohir.A10G101825 Gossypium hirsutum HOM05D004181 ORTHO05D005610 4.9e-131 472.2 527 47.6
Gorai.011G185300 Gossypium raimondii HOM05D004181 ORTHO05D005610 1.4e-130 470.7 527 47.4
Ciclev10004155m.g Citrus clementina HOM05D004181 ORTHO05D005610 3.2e-130 469.5 524 48.3
Glyma.15G098800 Glycine max HOM05D004181 ORTHO05D005610 3.2e-130 469.5 492 50.8
Glyma.13G214400 Glycine max HOM05D004181 ORTHO05D005610 7.1e-130 468.4 492 50.6
VMungo0540G0214 Vigna mungo HOM05D004181 ORTHO05D005610 6.0e-129 465.3 522 48.1
CSS0009092 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 1.8e-128 463.8 492 49.8
LjContig00389g0007799 Lotus japonicus HOM05D004181 ORTHO05D005610 1.8e-128 463.8 489 50.5
Manes.03G190400 Manihot esculenta HOM05D004181 ORTHO05D005610 1.8e-128 463.8 528 48.5
Phvul.006G160500 Phaseolus vulgaris HOM05D004181 ORTHO05D005610 3.0e-128 463.0 492 49.8
QL12p038326 Quercus lobata HOM05D004181 ORTHO05D005610 6.7e-128 461.8 527 48.0
arahy.Tifrunner.gnm1.ann1.6ZP27B Arachis hypogaea HOM05D004181 ORTHO05D005610 8.7e-128 461.5 493 49.5
Manes.15G017750 Manihot esculenta HOM05D004181 ORTHO05D005610 8.7e-128 461.5 528 47.7
Lalb_Chr18g0055771 Lupinus albus HOM05D004181 ORTHO05D005610 1.1e-127 461.1 524 47.5
MD13G1174600 Malus domestica HOM05D004181 ORTHO05D005610 1.9e-127 460.3 526 47.3
Prupe.1G143100 Prunus persica HOM05D004181 ORTHO05D005610 1.9e-127 460.3 527 48.0
TWI73G0666 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 2.1e-126 456.8 527 47.4
Potri.010G031800 Populus trichocarpa HOM05D004181 ORTHO05D005610 4.8e-126 455.7 528 47.3
Gohir.A02G045700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 8.2e-126 454.9 527 46.5
Psat1g186920 Pisum sativum HOM05D004181 ORTHO05D005610 1.1e-125 454.5 492 48.8
CANSAT78G2156 Cannabis sativa HOM05D004181 ORTHO05D005610 1.4e-125 454.1 528 48.5
Gorai.005G057000 Gossypium raimondii HOM05D004181 ORTHO05D005610 1.4e-125 454.1 527 46.3
Gohir.D02G051700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 2.4e-125 453.4 527 46.3
TPR.G1487 Trifolium pratense HOM05D004181 ORTHO05D005610 6.9e-125 451.8 526 46.6
AUR62040726 Chenopodium quinoa HOM05D004181 ORTHO05D005610 1.5e-124 450.7 524 47.3
MD16G1176300 Malus domestica HOM05D004181 ORTHO05D005610 1.5e-124 450.7 526 46.0
Cpa.g.sc16.105 Carica papaya HOM05D004181 ORTHO05D005610 3.4e-124 449.5 528 47.2
AL6G29980 Arabidopsis lyrata HOM05D004181 ORTHO05D005610 4.5e-124 449.1 524 47.1
Medtr2g020380 Medicago truncatula HOM05D004181 ORTHO05D005610 4.5e-124 449.1 492 48.0
Gohir.D10G165800 Gossypium hirsutum HOM05D004181 ORTHO05D005610 5.8e-124 448.7 526 46.2
Sc13g0003670 Simmondsia chinensis HOM05D004181 ORTHO05D005610 5.8e-124 448.7 523 47.4
ECA233G4950 Erigeron canadensis HOM05D004181 ORTHO05D005610 7.6e-124 448.4 527 46.3
EL10Ac3g06539 Beta vulgaris HOM05D004181 ORTHO05D005610 1.3e-123 447.6 531 46.9
AT5G18700 Arabidopsis thaliana HOM05D004181 ORTHO05D005610 5.0e-123 445.7 524 46.9
Zm00001eb333450 Zea mays HOM05D004181 ORTHO05D005610 5.0e-123 445.7 530 45.5
Carub.0006s1700 Capsella rubella HOM05D004181 ORTHO05D005610 8.4e-123 444.9 524 46.9
Sopen08g004800 Solanum pennellii HOM05D004181 ORTHO05D005610 1.4e-122 444.1 496 48.6
A03p09050 Brassica napus HOM05D004181 ORTHO05D005610 1.9e-122 443.7 524 46.9
BraA03t10229Z Brassica rapa HOM05D004181 ORTHO05D005610 1.9e-122 443.7 524 46.9
Solyc08g013940.3 Solanum lycopersicum HOM05D004181 ORTHO05D005610 1.9e-122 443.7 492 48.8
BolC9t58645H Brassica oleracea HOM05D004181 ORTHO05D005610 2.5e-122 443.4 524 46.4
CARHR194300 Cardamine hirsuta HOM05D004181 ORTHO05D005610 2.5e-122 443.4 524 46.8
MSTRG.21818 Avicennia marina HOM05D004181 ORTHO05D005610 3.2e-122 443.0 524 47.1
HanXRQChr13g0414551 Helianthus annuus HOM05D004181 ORTHO05D005610 4.2e-122 442.6 527 47.4
Migut.N00126 Erythranthe guttata HOM05D004181 ORTHO05D005610 5.5e-122 442.2 524 46.0
Os01g0259400 Oryza sativa ssp. japonica HOM05D004181 ORTHO05D005610 5.5e-122 442.2 528 45.5
Aa31LG11G10920 Aethionema arabicum HOM05D004181 ORTHO05D005610 1.6e-121 440.7 524 46.2
Lsat_1_v5_gn_6_15980 Lactuca sativa HOM05D004181 ORTHO05D005610 1.6e-121 440.7 522 46.0
C09p57750 Brassica napus HOM05D004181 ORTHO05D005610 2.1e-121 440.3 524 46.2
BcaC04g18651 Brassica carinata HOM05D004181 ORTHO05D005610 2.7e-121 439.9 524 46.2
RcHm_v2.0_Chr4g0420851 Rosa chinensis HOM05D004181 ORTHO05D005610 2.7e-121 439.9 532 45.9
C03p10540 Brassica napus HOM05D004181 ORTHO05D005610 3.5e-121 439.5 524 46.2
Sp6g25640 Schrenkiella parvula HOM05D004181 ORTHO05D005610 4.6e-121 439.1 524 46.6
CsaV3_3G014080 Cucumis sativus L. HOM05D004181 ORTHO05D005610 7.9e-121 438.3 526 46.6
ClCG05G005760 Citrullus lanatus HOM05D004181 ORTHO05D005610 1.3e-120 437.6 526 46.2
CAN.G2005.1 Capsicum annuum HOM05D004181 ORTHO05D005610 1.8e-120 437.2 492 48.2
BolC3t13535H Brassica oleracea HOM05D004181 ORTHO05D005610 2.3e-120 436.8 524 45.8
Zm00001eb127880 Zea mays HOM05D004181 ORTHO05D005610 3.0e-120 436.4 528 44.9
A10p20860 Brassica napus HOM05D004181 ORTHO05D005610 3.9e-120 436.0 524 46.0
BraA10t44151Z Brassica rapa HOM05D004181 ORTHO05D005610 3.9e-120 436.0 524 46.0
AUR62040385 Chenopodium quinoa HOM05D004181 ORTHO05D005610 3.9e-120 436.0 524 46.0
Thhalv10012450m.g Eutrema salsugineum HOM05D004181 ORTHO05D005610 3.3e-119 433.0 524 45.8
Peaxi162Scf00058g01114 Petunia axillaris HOM05D004181 ORTHO05D005610 3.3e-119 433.0 505 45.9
FvH4_4g17050 Fragaria vesca HOM05D004181 ORTHO05D005610 7.4e-119 431.8 531 45.2
FAN12G1830 Fragaria x ananassa HOM05D004181 ORTHO05D005610 7.4e-119 431.8 531 45.2
FAN12G4244 Fragaria x ananassa HOM05D004181 ORTHO05D005610 7.4e-119 431.8 531 45.2
Hund20614 Selenicereus undatus HOM05D004181 ORTHO05D005610 9.7e-119 431.4 525 45.1
Eucgr.H03714 Eucalyptus grandis HOM05D004181 ORTHO05D005610 2.2e-118 430.3 529 45.4
FAN07G0512 Fragaria x ananassa HOM05D004181 ORTHO05D005610 2.2e-118 430.3 532 44.9
FAN17G2769 Fragaria x ananassa HOM05D004181 ORTHO05D005610 6.3e-118 428.7 532 44.7
CBR_g38144 Chara braunii HOM05D004181 ORTHO05D005610 8.2e-118 428.3 576 43.9
Sed0020769 Sechium edule HOM05D004181 ORTHO05D005610 1.4e-117 427.6 492 46.1
Sed0026329 Sechium edule HOM05D004181 ORTHO05D005610 6.9e-117 425.2 526 44.9
Cc03_g12380 Coffea canephora HOM05D004181 ORTHO05D005610 1.5e-116 424.1 490 46.5
MELO3C006602.2 Cucumis melo HOM05D004181 ORTHO05D005610 2.5e-114 416.8 514 45.3
Rhsim04G0215600 Rhododendron simsii HOM05D004181 ORTHO05D005610 1.7e-110 404.1 528 43.9
SHI00295 Sapria himalayana HOM05D004181 ORTHO05D005610 1.1e-109 401.4 592 40.2
PSO170G6249 Papaver somniferum HOM05D004181 ORTHO05D005610 1.4e-109 401.0 526 44.9
BcaB08g36651 Brassica carinata HOM05D004181 ORTHO05D005610 5.3e-109 399.1 524 43.9
HPP92_025279 Vanilla planifolia HOM05D004181 ORTHO05D005610 4.7e-105 386.0 531 42.0
CiPaw.02G087200 Carya illinoinensis HOM05D004181 ORTHO05D005610 1.8e-101 374.0 520 43.5
MCO07G673 Micromonas commoda HOM05D004181 ORTHO05D005610 2.0e-92 344.0 558 38.0
Cfa015503 Carpinus fangiana HOM05D004181 ORTHO05D005610 2.7e-89 333.6 413 47.7
Cre14.g612000 Chlamydomonas reinhardtii HOM05D004181 ORTHO05D005610 3.0e-88 330.1 511 37.6
Ca_00581_v3 Cicer arietinum L. HOM05D004181 ORTHO05D005610 9.8e-87 325.1 336 49.7
Haze_01049 Corylus avellana HOM05D004181 ORTHO05D005610 1.0e-83 315.1 422 45.7
Lj6C668T4 Lonicera japonica HOM05D004181 ORTHO05D005610 5.7e-79 299.3 368 46.5
DCAR_024617 Daucus carota HOM05D004181 ORTHO05D005610 7.5e-79 298.9 325 50.2
Lalb_Chr15g0087091 Lupinus albus HOM05D004181 ORTHO05D005610 2.2e-78 297.4 312 50.0
GSVIVG01017819001 Vitis vinifera HOM05D004181 ORTHO05D005610 1.8e-77 294.3 495 38.0
Peaxi162Scf00075g01553 Petunia axillaris HOM05D004181 ORTHO05D005610 1.6e-73 281.2 459 39.9
SalBow5G0241 Salvia bowleyana HOM05D004181 ORTHO05D005610 1.7e-70 271.2 323 47.4
SalBow5G5345 Salvia bowleyana HOM05D004181 ORTHO05D005610 1.7e-70 271.2 323 47.4
CDE12G0304 Ceratophyllum demersum HOM05D004181 ORTHO05D005610 2.2e-70 270.8 347 46.7
vmacro08213 Vaccinium macrocarpon HOM05D004181 ORTHO05D005610 8.3e-70 268.9 317 48.9
SGA_v2.0_scaffold89G27558 Striga asiatica HOM05D004181 ORTHO05D005610 5.4e-69 266.2 322 47.2
PRCOL_00001584 Prasinoderma coloniale HOM05D004181 ORTHO05D005610 2.5e-66 257.3 505 34.3
SGA_v2.0_scaffold299G47726 Striga asiatica HOM05D004181 ORTHO05D005610 7.1e-53 212.6 440 35.0
Rhsim13G0005700 Rhododendron simsii HOM05D004181 ORTHO05D005610 1.3e-46 191.8 243 44.9
PGR004G0905 Punica granatum HOM05D004181 ORTHO05D005610 8.4e-46 189.1 216 50.5
THA.LOC104820110 Tarenaya hassleriana HOM05D004181 ORTHO05D005610 4.7e-41 173.3 219 47.9
AT1G33940 Arabidopsis thaliana HOM05D004181 ORTHO05D005610 7.1e-37 159.5 182 45.6
Zm00001eb216850 Zea mays HOM05D013194 ORTHO05D015061 1.2e-31 142.1 165 42.4
Zm00001eb341280 Zea mays HOM05D004181 ORTHO05D005610 2.0e-31 141.4 165 42.4
Lalb_Chr15g0087081 Lupinus albus HOM05D004181 ORTHO05D005610 4.4e-31 140.2 170 41.2
Zm00001eb202170 Zea mays HOM05D004181 ORTHO05D005610 7.6e-31 139.4 158 43.7
arahy.Tifrunner.gnm1.ann1.7XC003 Arachis hypogaea HOM05D000722 ORTHO05D005610 1.3e-30 138.7 132 50.8
Zm00001eb237010 Zea mays HOM05D001670 ORTHO05D005610 8.4e-30 136.0 143 46.9
Zm00001eb133400 Zea mays HOM05D013194 ORTHO05D015061 2.4e-29 134.4 150 45.3
Nitab4.5_0000242g0080 Nicotiana tabacum HOM05D004181 ORTHO05D005610 1.3e-27 128.6 104 58.7
Nitab4.5_0003641g0020 Nicotiana tabacum HOM05D004181 ORTHO05D005610 3.0e-27 127.5 129 51.2
PGSC0003DMG400016756 Solanum tuberosum HOM05D004181 ORTHO05D005610 3.2e-21 107.5 148 48.6
BcaC05g24879 Brassica carinata HOM05D004181 ORTHO05D039090 7.9e-20 102.8 141 44.0
Atru.chr4.2742 Acer truncatum HOM05D004181 ORTHO05D005610 5.8e-15 86.7 153 37.3
arahy.Tifrunner.gnm1.ann1.Z8UJG3 Arachis hypogaea HOM05D004181 ORTHO05D005610 5.1e-11 73.6 63 57.1
Solyc05g023630.1 Solanum lycopersicum HOM05D004181 ORTHO05D005610 2.4e-08 64.7 60 53.3
C05p08680 Brassica napus HOM05D004181 ORTHO05D039090 2.0e-07 61.6 55 60.0


User provided reference genes

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