Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 4.0e-162 574.7 288 100.0
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.1e-148 530.0 289 91.3
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 5.2e-114 414.8 284 69.4
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 9.6e-108 394.0 301 63.5
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.1e-98 362.5 301 56.8
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 7.6e-97 357.8 301 57.1
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 1.7e-96 356.7 304 56.2
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 2.9e-96 355.9 305 56.7
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 3.8e-96 355.5 301 57.1
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 4.9e-96 355.1 302 57.6
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 1.1e-95 354.0 304 55.6
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 3.2e-95 352.4 311 54.7
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 3.2e-95 352.4 301 57.5
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 4.2e-95 352.1 301 57.1
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 4.2e-95 352.1 305 55.7
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 5.5e-95 351.7 307 56.7
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 5.5e-95 351.7 302 57.0
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 1.2e-94 350.5 295 56.9
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 1.2e-94 350.5 305 55.7
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 2.7e-94 349.4 300 57.7
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 3.5e-94 349.0 288 56.9
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 3.5e-94 349.0 308 54.5
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 4.6e-94 348.6 298 57.0
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 6.0e-94 348.2 318 54.4
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 7.9e-94 347.8 305 56.1
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 7.9e-94 347.8 303 55.8
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 1.0e-93 347.4 301 55.1
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 1.0e-93 347.4 313 54.6
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 1.0e-93 347.4 310 55.2
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.3e-93 347.1 309 54.7
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 1.3e-93 347.1 308 55.2
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 1.3e-93 347.1 307 55.4
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.3e-93 347.1 306 55.2
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 1.8e-93 346.7 302 55.3
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 1.8e-93 346.7 301 56.5
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.3e-93 346.3 309 54.0
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 3.0e-93 345.9 302 57.6
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 3.0e-93 345.9 308 54.9
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 3.9e-93 345.5 301 54.8
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 5.1e-93 345.1 302 56.6
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 6.7e-93 344.7 302 55.6
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 6.7e-93 344.7 292 58.9
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 8.7e-93 344.4 304 57.6
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 8.7e-93 344.4 303 55.8
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 8.7e-93 344.4 305 55.4
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 8.7e-93 344.4 309 53.7
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 1.1e-92 344.0 306 55.2
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 1.5e-92 343.6 299 56.9
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.5e-92 343.6 304 56.2
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 1.5e-92 343.6 308 54.5
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.9e-92 343.2 298 56.7
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 3.3e-92 342.4 309 53.7
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 3.3e-92 342.4 308 55.2
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 3.3e-92 342.4 312 53.2
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 3.3e-92 342.4 312 53.2
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 4.3e-92 342.0 311 54.3
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 5.6e-92 341.7 284 58.1
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 7.4e-92 341.3 297 55.9
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 9.6e-92 340.9 302 54.3
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 1.3e-91 340.5 307 54.7
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 1.6e-91 340.1 306 54.6
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 1.6e-91 340.1 302 54.6
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 2.1e-91 339.7 302 54.6
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 2.1e-91 339.7 297 55.2
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 2.8e-91 339.3 298 57.0
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 2.8e-91 339.3 299 55.9
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 3.7e-91 339.0 312 52.9
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 3.7e-91 339.0 300 55.3
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 8.1e-91 337.8 300 54.7
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 8.1e-91 337.8 306 53.3
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 8.1e-91 337.8 317 53.0
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.1e-90 337.4 298 55.7
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 1.1e-90 337.4 302 55.3
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 2.4e-90 336.3 313 52.7
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 2.4e-90 336.3 303 55.1
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 2.4e-90 336.3 305 54.4
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 3.1e-90 335.9 301 55.1
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 6.9e-90 334.7 301 54.2
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 6.9e-90 334.7 330 51.8
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 6.9e-90 334.7 302 54.3
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 6.9e-90 334.7 304 54.9
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 9.0e-90 334.3 302 54.6
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 1.2e-89 334.0 329 49.2
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.2e-89 334.0 294 54.8
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 1.5e-89 333.6 303 57.4
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 2.0e-89 333.2 306 53.9
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 2.0e-89 333.2 305 54.1
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 2.6e-89 332.8 324 51.5
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 2.6e-89 332.8 304 54.6
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 4.5e-89 332.0 304 54.6
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 4.5e-89 332.0 306 52.9
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 1.7e-88 330.1 307 53.4
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 2.2e-88 329.7 306 53.6
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 2.1e-86 323.2 310 52.3
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 2.7e-86 322.8 303 53.1
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 3.7e-83 312.4 351 48.7
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 1.4e-82 310.5 309 51.5
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 2.6e-81 306.2 275 54.9
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.9e-79 300.1 314 48.4
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 6.7e-77 291.6 291 51.5
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 1.3e-75 287.3 264 54.5
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.6e-75 287.0 225 61.3
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 2.8e-75 286.2 374 42.8
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 1.1e-74 284.3 334 47.3
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 8.5e-72 274.6 226 59.3
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 2.3e-69 266.5 294 47.6
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 2.0e-68 263.5 228 55.3
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 2.6e-68 263.1 257 53.3
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 1.3e-64 250.8 231 54.5
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 2.3e-61 240.0 196 60.7
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 1.2e-54 217.6 188 54.3
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.3e-51 207.6 190 53.7
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 6.3e-51 205.3 266 45.1
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.0e-49 200.3 186 53.2
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 3.5e-49 199.5 181 54.1
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 5.4e-42 175.6 135 60.0
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.3e-40 171.0 280 38.6
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.2e-28 131.3 210 37.6
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 5.7e-28 129.0 97 61.9
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.7e-27 127.5 181 41.4
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 4.1e-26 122.9 126 50.8
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 9.2e-26 121.7 281 33.5
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 4.6e-25 119.4 154 43.5
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 7.8e-25 118.6 122 51.6
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 7.0e-18 95.5 163 39.3
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 1.7e-16 90.9 121 43.8
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 1.2e-14 84.7 120 42.5
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 2.3e-13 80.5 58 67.2
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.0e-12 77.4 80 45.0
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 4.4e-12 76.3 67 49.3
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 7.5e-12 75.5 95 40.0
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 9.8e-12 75.1 73 47.9
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 1.7e-11 74.3 114 36.8
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 4.9e-11 72.8 63 52.4
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 2.4e-10 70.5 115 39.1
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 3.3e-07 60.1 88 38.6
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 1.6e-06 57.8 68 47.1


User provided reference genes

Program Settings