Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO143G0325 Selaginella moellendorffii HOM05D011343 ORTHO05D016526 0.0e+00 4694.0 2493 100.0
AagrBONN_evm.TU.Sc2ySwM_228.193 Anthoceros agrestis HOM05D011343 ORTHO05D016526 0.0e+00 1911.7 2421 44.0
Mapoly0060s0082 Marchantia polymorpha HOM05D011343 ORTHO05D016526 0.0e+00 1892.1 2441 43.7
Pp3c2_7460 Physcomitrium patens HOM05D011343 ORTHO05D016526 0.0e+00 1703.3 2395 41.0
Pp3c1_31160 Physcomitrium patens HOM05D011343 ORTHO05D016526 0.0e+00 1698.7 2396 41.1
Pp3c12_5580 Physcomitrium patens HOM05D011343 ORTHO05D016526 0.0e+00 1371.7 2240 37.4
Pp3c3_16200 Physcomitrium patens HOM05D011343 ORTHO05D016526 0.0e+00 1370.5 2245 37.1
SEGI_29173 Sequoiadendron giganteum HOM05D011343 ORTHO05D016526 1.1e-287 995.0 1361 42.5
CBR_g37703 Chara braunii HOM05D011343 ORTHO05D016526 9.4e-260 902.1 2298 29.8
SEGI_06827 Sequoiadendron giganteum HOM05D011343 ORTHO05D016526 6.3e-155 553.9 834 39.4
SEGI_34609 Sequoiadendron giganteum HOM05D011343 ORTHO05D384342 7.1e-50 204.9 250 41.2
SEGI_22943 Sequoiadendron giganteum HOM05D011343 ORTHO05D385027 1.2e-20 107.8 110 43.6
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 1.9e-10 73.9 397 22.2
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 1.9e-10 73.9 393 21.9
SEGI_06731 Sequoiadendron giganteum HOM05D011343 ORTHO05D385284 5.5e-10 72.4 111 37.8
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 7.2e-10 72.0 223 24.7
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 9.4e-10 71.6 274 22.6
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 1.6e-09 70.9 398 21.9
Solyc08g021920.4 Solanum lycopersicum HOM05D003720 ORTHO05D005312 1.6e-09 70.9 223 23.8
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 1.6e-09 70.9 223 23.8
Gohir.A06G060200 Gossypium hirsutum HOM05D003720 ORTHO05D005312 2.1e-09 70.5 397 21.4
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 2.7e-09 70.1 397 21.4
PRCOL_00006435 Prasinoderma coloniale HOM05D003720 ORTHO05D005312 2.7e-09 70.1 246 25.2
Atru.chr7.1286 Acer truncatum HOM05D003720 ORTHO05D005312 3.6e-09 69.7 280 23.2
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 4.7e-09 69.3 223 23.3
Hund12707 Selenicereus undatus HOM05D003720 ORTHO05D005312 6.1e-09 68.9 215 24.2
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 6.1e-09 68.9 223 24.2
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 8.0e-09 68.6 397 21.2
Os10g0575200 Oryza sativa ssp. japonica HOM05D003720 ORTHO05D005312 8.0e-09 68.6 397 21.2
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 8.0e-09 68.6 223 24.2
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 8.0e-09 68.6 223 24.7
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 8.0e-09 68.6 155 28.4
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 1.0e-08 68.2 287 23.7
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 1.0e-08 68.2 155 29.0
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 1.0e-08 68.2 223 24.2
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 1.0e-08 68.2 211 23.2
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 1.4e-08 67.8 223 23.8
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 1.4e-08 67.8 223 24.2
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 1.4e-08 67.8 223 24.2
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 1.4e-08 67.8 223 23.8
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 1.4e-08 67.8 223 22.9
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 1.4e-08 67.8 392 21.4
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 1.4e-08 67.8 219 23.7
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 1.4e-08 67.8 274 23.0
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 1.8e-08 67.4 211 23.7
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 1.8e-08 67.4 148 29.7
SHI03184 Sapria himalayana HOM05D003720 ORTHO05D005312 1.8e-08 67.4 143 30.8
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 2.3e-08 67.0 398 22.1
Actinidia26424 Actinidia chinensis HOM05D003720 ORTHO05D005312 2.3e-08 67.0 252 23.8
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 2.3e-08 67.0 397 21.9
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 2.3e-08 67.0 126 32.5
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 2.3e-08 67.0 223 24.2
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 2.3e-08 67.0 223 24.7
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 2.3e-08 67.0 219 23.3
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 2.3e-08 67.0 126 32.5
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 2.3e-08 67.0 223 24.2
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 2.3e-08 67.0 155 29.0
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 2.3e-08 67.0 148 29.7
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 2.3e-08 67.0 148 29.7
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 2.3e-08 67.0 223 24.2
GSVIVG01015442001 Vitis vinifera HOM05D003720 ORTHO05D005312 2.3e-08 67.0 223 23.8
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 3.0e-08 66.6 274 23.0
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 3.0e-08 66.6 376 22.9
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 3.0e-08 66.6 223 23.8
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 3.0e-08 66.6 126 31.7
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 3.0e-08 66.6 148 29.7
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 3.0e-08 66.6 148 29.7
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 3.0e-08 66.6 223 24.2
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 3.0e-08 66.6 223 24.2
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 3.0e-08 66.6 126 32.5
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 3.0e-08 66.6 223 23.8
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 3.0e-08 66.6 223 23.8
Nitab4.5_0000100g0300 Nicotiana tabacum HOM05D003720 ORTHO05D005312 3.0e-08 66.6 223 22.9
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 3.0e-08 66.6 223 24.2
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 4.0e-08 66.2 126 31.7
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 4.0e-08 66.2 126 31.7
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 4.0e-08 66.2 223 23.3
Nitab4.5_0002116g0040 Nicotiana tabacum HOM05D003720 ORTHO05D005312 4.0e-08 66.2 219 22.4
Peaxi162Scf00256g00817 Petunia axillaris HOM05D003720 ORTHO05D005312 4.0e-08 66.2 223 23.8
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 4.0e-08 66.2 282 23.4
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 5.2e-08 65.9 126 31.7
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 5.2e-08 65.9 148 29.7
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 5.2e-08 65.9 218 23.9
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 5.2e-08 65.9 223 23.8
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 6.8e-08 65.5 223 22.9
Cpa.g.sc23.156 Carica papaya HOM05D003720 ORTHO05D005312 6.8e-08 65.5 126 31.7
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 6.8e-08 65.5 223 23.3
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 6.8e-08 65.5 126 31.7
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 6.8e-08 65.5 223 23.8
Hma1.2p1_0245F.1_g101400 Hydrangea macrophylla HOM05D003720 ORTHO05D005312 6.8e-08 65.5 126 31.7
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 6.8e-08 65.5 126 31.0
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 6.8e-08 65.5 126 31.7
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 6.8e-08 65.5 380 23.4
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 8.8e-08 65.1 223 23.8
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 8.8e-08 65.1 223 23.8
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 8.8e-08 65.1 223 23.8
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 8.8e-08 65.1 126 31.7
CSS0041174 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 8.8e-08 65.1 126 31.7
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 8.8e-08 65.1 126 31.7
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 8.8e-08 65.1 126 31.7
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 8.8e-08 65.1 223 23.3
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 8.8e-08 65.1 126 31.7
HPP92_014850 Vanilla planifolia HOM05D003720 ORTHO05D005312 1.2e-07 64.7 223 23.3
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 1.5e-07 64.3 223 23.8
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 1.5e-07 64.3 126 31.7
SEGI_21654 Sequoiadendron giganteum HOM05D011343 ORTHO05D006175 1.5e-07 64.3 124 29.8
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 2.0e-07 63.9 767 21.1
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 2.0e-07 63.9 280 21.8
Sp4g08590 Schrenkiella parvula HOM05D003720 ORTHO05D005312 2.0e-07 63.9 126 31.7
CARHR119040 Cardamine hirsuta HOM05D003720 ORTHO05D005312 2.6e-07 63.5 126 31.7
TAR626G1854 Trochodendron aralioides HOM05D003720 ORTHO05D005312 2.6e-07 63.5 126 31.0
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 3.4e-07 63.2 223 23.3
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 7.5e-07 62.0 155 27.1
SEGI_11466 Sequoiadendron giganteum HOM05D011343 ORTHO05D386210 1.7e-06 60.8 85 41.2
CDE06G1063 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 6.3e-06 58.9 102 33.3


User provided reference genes

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