Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 0.0e+00 1325.1 683 100.0
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 2.8e-190 669.5 724 50.7
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 4.8e-182 642.1 817 45.0
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 6.9e-165 585.1 720 46.2
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 1.2e-164 584.3 735 44.6
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 3.8e-163 579.3 688 46.1
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 5.0e-163 578.9 720 45.7
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 6.5e-163 578.6 769 43.6
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.1e-162 577.8 712 45.2
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 2.5e-162 576.6 747 43.8
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 2.5e-162 576.6 734 43.2
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 5.5e-162 575.5 731 45.1
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 2.1e-161 573.5 724 44.1
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 2.7e-161 573.2 720 45.6
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 6.1e-161 572.0 695 45.8
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 1.8e-160 570.5 724 45.3
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 3.0e-160 569.7 696 45.0
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 3.9e-160 569.3 771 43.6
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 4.4e-159 565.8 746 44.0
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 7.4e-159 565.1 756 43.7
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 7.4e-159 565.1 734 43.1
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 7.4e-159 565.1 735 43.8
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 7.4e-159 565.1 744 43.8
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.3e-158 564.3 741 43.7
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 3.7e-158 562.8 689 46.0
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 1.1e-157 561.2 736 42.8
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 1.8e-157 560.5 713 44.3
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 3.1e-157 559.7 734 44.0
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 4.1e-157 559.3 686 44.5
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 4.1e-157 559.3 715 44.2
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 5.3e-157 558.9 747 43.9
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 7.0e-157 558.5 718 44.4
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 1.2e-156 557.8 687 44.1
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 2.6e-156 556.6 750 43.2
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 3.5e-156 556.2 685 43.6
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 3.5e-156 556.2 729 43.9
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 3.5e-156 556.2 753 41.7
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 3.5e-156 556.2 714 44.1
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 4.5e-156 555.8 687 44.4
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 7.7e-156 555.1 742 42.9
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 7.7e-156 555.1 722 43.5
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 7.7e-156 555.1 718 44.0
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.0e-155 554.7 691 44.3
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 1.3e-155 554.3 732 44.3
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 1.7e-155 553.9 686 43.7
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 2.9e-155 553.1 713 43.2
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 3.8e-155 552.7 722 43.2
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 3.8e-155 552.7 753 41.7
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 8.5e-155 551.6 725 43.6
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 8.5e-155 551.6 686 44.3
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 8.5e-155 551.6 702 42.9
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 1.5e-154 550.8 718 42.9
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.9e-154 550.4 708 43.5
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 2.5e-154 550.1 727 43.1
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 3.2e-154 549.7 706 42.8
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 7.2e-154 548.5 740 43.0
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 1.2e-153 547.7 725 43.4
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 1.6e-153 547.4 719 44.4
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.7e-153 546.6 693 43.6
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 2.7e-153 546.6 748 42.5
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 3.6e-153 546.2 686 44.9
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.7e-153 545.8 754 42.2
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 8.0e-153 545.0 715 43.2
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 8.0e-153 545.0 713 43.2
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.0e-152 544.7 783 40.9
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 1.0e-152 544.7 757 41.5
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 1.4e-152 544.3 738 42.8
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 1.8e-152 543.9 751 42.5
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 6.7e-152 542.0 747 41.5
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 6.7e-152 542.0 700 43.1
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 6.7e-152 542.0 731 43.0
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 8.8e-152 541.6 737 42.7
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 1.5e-151 540.8 780 41.9
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 2.8e-150 536.6 691 42.1
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 2.8e-150 536.6 716 43.2
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 4.1e-149 532.7 750 42.4
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 1.2e-148 531.2 686 42.7
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 2.0e-148 530.4 721 42.4
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 2.0e-148 530.4 654 43.7
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 4.5e-148 529.3 676 43.8
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 1.6e-145 520.8 703 41.5
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 6.1e-145 518.8 762 41.9
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 1.2e-143 514.6 734 41.4
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 4.8e-142 509.2 716 39.9
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.8e-141 507.3 795 38.7
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 2.4e-141 506.9 750 41.5
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 9.1e-141 505.0 682 41.5
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 9.1e-141 505.0 749 40.7
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 9.5e-138 495.0 710 42.1
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 1.7e-126 457.6 710 40.0
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 8.3e-126 455.3 710 40.1
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 1.2e-124 451.4 698 39.1
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 1.2e-124 451.4 698 39.1
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 1.2e-124 451.4 698 39.1
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 6.0e-124 449.1 418 54.5
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.0e-123 448.4 621 41.9
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 4.0e-120 436.4 707 38.9
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 1.7e-118 431.0 564 43.1
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 4.9e-118 429.5 661 38.7
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 1.2e-116 424.9 894 33.9
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 3.9e-115 419.9 423 51.1
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 5.6e-114 416.0 387 53.7
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 8.1e-113 412.1 547 42.6
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 2.0e-111 407.5 613 41.1
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 8.6e-107 392.1 523 44.4
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 3.6e-105 386.7 650 37.2
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 4.2e-93 346.7 564 38.3
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 7.1e-93 345.9 500 42.2
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 1.6e-84 318.2 595 37.3
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 1.1e-72 278.9 248 54.0
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 6.9e-72 276.2 489 37.0
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 1.3e-70 271.9 500 37.8
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 5.1e-59 233.4 458 34.9
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 9.7e-50 202.6 183 52.5
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 1.3e-46 192.2 218 45.0
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 3.8e-38 164.1 661 26.6
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.9e-37 161.8 142 54.9
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-33 147.5 157 47.8
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 5.9e-31 140.2 244 37.3
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 7.7e-31 139.8 126 49.2
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 1.0e-30 139.4 197 40.6
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 5.0e-30 137.1 128 52.3
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 5.0e-30 137.1 124 50.0
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 6.5e-30 136.7 118 56.8
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 9.4e-29 132.9 136 47.1
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.2e-28 132.5 168 41.7
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 6.8e-27 126.7 117 52.1
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 2.4e-24 118.2 527 23.3
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 3.8e-22 110.9 113 51.3
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 8.6e-22 109.8 399 27.6
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 5.2e-19 100.5 88 48.9
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.2e-15 89.4 74 54.1
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 4.5e-15 87.4 153 33.3
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 2.3e-14 85.1 88 43.2
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 2.3e-14 85.1 88 43.2
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 2.2e-09 68.6 94 37.2
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.4e-08 65.9 62 56.5
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 8.6e-06 56.6 47 55.3


User provided reference genes

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