Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 3.6e-233 811.2 412 100.0
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 1.8e-38 164.5 389 38.3
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 1.1e-35 155.2 422 35.3
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 4.5e-34 149.8 385 34.5
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 3.6e-31 140.2 430 33.0
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 1.6e-23 114.8 231 39.0
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 5.7e-21 106.3 225 35.1
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.7e-20 104.8 223 35.0
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 1.7e-20 104.8 241 35.3
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 4.1e-19 100.1 166 41.6
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 9.1e-19 99.0 211 37.9
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 1.2e-18 98.6 174 42.5
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 2.7e-18 97.4 127 47.2
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 2.7e-18 97.4 147 41.5
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 3.5e-18 97.1 178 41.6
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 3.5e-18 97.1 197 40.6
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 3.5e-18 97.1 118 46.6
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 3.5e-18 97.1 115 47.8
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 5.9e-18 96.3 123 46.3
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 1.0e-17 95.5 249 34.1
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 1.0e-17 95.5 122 45.9
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 1.7e-17 94.7 149 42.3
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 2.2e-17 94.4 211 35.5
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 2.2e-17 94.4 273 33.0
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.2e-17 94.4 184 38.6
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 2.2e-17 94.4 221 37.1
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 2.2e-17 94.4 122 46.7
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 2.9e-17 94.0 122 45.1
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 2.9e-17 94.0 118 47.5
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 2.9e-17 94.0 167 38.9
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 2.9e-17 94.0 224 35.7
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 3.8e-17 93.6 154 39.6
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 5.0e-17 93.2 149 42.3
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 5.0e-17 93.2 127 44.1
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 5.0e-17 93.2 207 37.2
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 6.5e-17 92.8 123 46.3
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 8.5e-17 92.4 177 41.2
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 1.1e-16 92.0 115 45.2
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 1.1e-16 92.0 182 36.8
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 1.5e-16 91.7 160 38.8
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 1.5e-16 91.7 376 28.7
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.9e-16 91.3 184 38.0
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 2.5e-16 90.9 184 36.4
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 2.5e-16 90.9 332 29.8
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 2.5e-16 90.9 343 30.0
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 3.2e-16 90.5 345 28.7
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 3.2e-16 90.5 411 28.2
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 4.2e-16 90.1 109 48.6
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 5.5e-16 89.7 334 31.7
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 7.2e-16 89.4 198 35.4
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 7.2e-16 89.4 143 45.5
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 9.4e-16 89.0 115 47.8
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 9.4e-16 89.0 125 47.2
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 9.4e-16 89.0 192 37.5
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 9.4e-16 89.0 338 29.6
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 1.2e-15 88.6 336 30.7
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 1.2e-15 88.6 125 45.6
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 1.6e-15 88.2 203 37.9
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 1.6e-15 88.2 118 45.8
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 1.6e-15 88.2 210 35.2
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 1.6e-15 88.2 130 41.5
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 1.6e-15 88.2 132 45.5
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 2.7e-15 87.4 126 45.2
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.7e-15 87.4 384 29.2
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 2.7e-15 87.4 121 45.5
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 2.7e-15 87.4 115 44.3
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 3.6e-15 87.0 144 43.8
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 4.7e-15 86.7 174 37.9
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 4.7e-15 86.7 386 28.8
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 4.7e-15 86.7 173 39.9
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 4.7e-15 86.7 153 41.8
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 6.1e-15 86.3 118 44.1
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 6.1e-15 86.3 188 37.8
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 8.0e-15 85.9 376 27.9
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 1.0e-14 85.5 118 44.1
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 1.0e-14 85.5 336 28.3
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 1.0e-14 85.5 121 46.3
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 1.4e-14 85.1 115 45.2
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 1.4e-14 85.1 371 29.4
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 1.4e-14 85.1 121 46.3
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 2.3e-14 84.3 340 30.0
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 2.3e-14 84.3 122 43.4
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 3.0e-14 84.0 192 33.9
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 4.0e-14 83.6 131 42.0
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 5.2e-14 83.2 150 38.0
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 8.8e-14 82.4 374 27.5
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 1.5e-13 81.6 120 42.5
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 1.5e-13 81.6 117 42.7
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 2.0e-13 81.3 126 39.7
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 2.0e-13 81.3 317 31.5
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 4.4e-13 80.1 121 43.8
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 9.8e-13 79.0 131 40.5
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 9.8e-13 79.0 119 42.0
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 9.8e-13 79.0 119 42.0
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 9.8e-13 79.0 119 42.0
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 9.8e-13 79.0 147 38.1
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 9.8e-13 79.0 114 44.7
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 9.8e-13 79.0 157 38.2
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.7e-12 78.2 186 33.3
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 1.7e-12 78.2 144 37.5
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 2.2e-12 77.8 120 41.7
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 4.8e-12 76.6 125 38.4
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 4.8e-12 76.6 235 33.2
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 4.8e-12 76.6 140 38.6
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 1.1e-11 75.5 125 38.4
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 1.4e-11 75.1 131 37.4
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 1.4e-11 75.1 120 39.2
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 1.8e-11 74.7 355 28.2
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 1.8e-11 74.7 145 37.9
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 1.8e-11 74.7 209 32.5
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 3.1e-11 73.9 53 60.4
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 4.1e-11 73.6 120 39.2
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 4.1e-11 73.6 166 33.7
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 7.0e-11 72.8 391 29.2
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 7.0e-11 72.8 192 36.5
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 1.0e-09 68.9 192 35.4
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 1.3e-09 68.6 113 38.9
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 2.9e-09 67.4 73 54.8
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 2.9e-09 67.4 178 33.1
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 3.8e-09 67.0 98 40.8
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 5.0e-09 66.6 94 47.9
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 1.5e-08 65.1 304 28.6
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 4.2e-08 63.5 284 29.9
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 5.5e-08 63.2 102 40.2
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 7.2e-08 62.8 269 27.9
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 9.5e-08 62.4 152 34.2
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 1.2e-07 62.0 43 62.8
ECA233G2759 Erigeron canadensis HOM05D002346 ORTHO05D002452 3.6e-07 60.5 49 65.3
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 6.1e-07 59.7 324 28.1
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 1.4e-06 58.5 342 27.5
Aqoxy3G00036 Aquilegia oxysepala HOM05D002346 ORTHO05D002452 1.8e-06 58.2 73 45.2
Lsat_1_v5_gn_8_45621 Lactuca sativa HOM05D002346 ORTHO05D002452 8.8e-06 55.8 52 55.8


User provided reference genes

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