Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 4.5e-194 681.0 332 100.0
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 3.0e-81 306.2 328 44.8
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 3.3e-80 302.8 287 48.1
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 3.3e-80 302.8 326 44.2
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 1.7e-79 300.4 301 46.2
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 2.2e-79 300.1 287 48.8
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 2.8e-79 299.7 289 48.1
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 1.4e-78 297.4 323 44.9
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 1.8e-78 297.0 333 46.5
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 3.1e-78 296.2 289 47.4
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 1.2e-77 294.3 327 43.4
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 2.0e-77 293.5 328 44.2
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 2.7e-77 293.1 329 43.8
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 5.9e-77 292.0 314 47.1
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 7.7e-77 291.6 286 46.5
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 7.7e-77 291.6 286 46.9
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 7.7e-77 291.6 289 47.1
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 1.0e-76 291.2 289 47.1
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 1.3e-76 290.8 289 47.8
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 1.3e-76 290.8 323 44.3
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 2.2e-76 290.0 329 42.6
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 5.0e-76 288.9 293 46.1
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 5.0e-76 288.9 325 44.3
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 6.5e-76 288.5 289 46.0
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 6.5e-76 288.5 287 47.0
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 6.5e-76 288.5 321 45.5
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 8.5e-76 288.1 287 45.6
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 1.9e-75 287.0 329 45.6
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.5e-75 286.6 289 47.1
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 2.5e-75 286.6 286 44.4
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 3.2e-75 286.2 319 42.0
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 3.2e-75 286.2 330 43.3
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 4.2e-75 285.8 315 43.8
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 7.2e-75 285.0 327 42.2
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 9.4e-75 284.6 287 45.3
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 9.4e-75 284.6 287 45.3
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.2e-74 284.3 287 44.9
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 1.6e-74 283.9 303 44.9
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.6e-74 283.9 276 48.2
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 2.1e-74 283.5 287 46.3
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 2.7e-74 283.1 286 46.5
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 4.7e-74 282.3 331 40.8
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 6.1e-74 282.0 286 45.8
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 8.0e-74 281.6 287 47.0
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 1.0e-73 281.2 294 45.6
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 1.4e-73 280.8 286 45.5
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 1.4e-73 280.8 286 44.8
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 2.3e-73 280.0 325 44.3
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 3.0e-73 279.6 277 46.9
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 3.0e-73 279.6 286 45.5
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 4.0e-73 279.3 302 44.4
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 5.2e-73 278.9 331 43.2
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 6.8e-73 278.5 286 46.2
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 8.8e-73 278.1 287 44.6
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.2e-72 277.7 298 45.3
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 1.5e-72 277.3 323 41.5
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 2.6e-72 276.6 325 43.1
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 3.4e-72 276.2 323 43.3
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 3.4e-72 276.2 310 44.2
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 4.4e-72 275.8 331 42.6
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 4.4e-72 275.8 298 45.0
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 5.7e-72 275.4 331 42.0
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 5.7e-72 275.4 286 45.8
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 9.8e-72 274.6 298 44.6
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 9.8e-72 274.6 287 45.6
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.3e-71 274.2 328 43.6
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 1.7e-71 273.9 286 46.2
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 2.2e-71 273.5 287 43.6
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.8e-71 273.1 298 44.3
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 2.8e-71 273.1 325 42.2
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 8.3e-71 271.6 294 42.2
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 1.8e-70 270.4 327 41.0
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 3.1e-70 269.6 323 41.2
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 3.1e-70 269.6 323 41.2
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 4.1e-70 269.2 298 40.9
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 4.1e-70 269.2 329 40.7
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 2.0e-69 266.9 287 43.6
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.7e-69 266.5 289 43.3
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 4.5e-69 265.8 326 40.2
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 7.7e-69 265.0 283 43.5
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 7.7e-69 265.0 295 41.4
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 1.0e-68 264.6 316 41.8
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 1.0e-68 264.6 283 43.5
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 1.0e-68 264.6 297 43.8
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 1.7e-68 263.8 324 42.3
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 2.9e-68 263.1 283 41.3
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 5.0e-68 262.3 287 41.5
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 6.5e-68 261.9 323 40.9
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 6.5e-68 261.9 292 42.5
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 1.5e-67 260.8 283 41.0
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 7.2e-67 258.5 298 40.9
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 7.2e-67 258.5 331 39.6
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 1.6e-66 257.3 320 40.6
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 2.1e-66 256.9 286 40.9
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 2.1e-66 256.9 276 43.1
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 2.8e-66 256.5 328 38.1
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 3.6e-66 256.1 283 41.3
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 1.0e-65 254.6 330 40.0
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 8.9e-65 251.5 338 37.0
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 8.9e-65 251.5 323 39.9
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 4.9e-63 245.7 290 41.7
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 8.3e-63 245.0 295 40.0
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.2e-61 241.1 275 41.5
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 3.5e-61 239.6 287 43.2
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 1.7e-60 237.3 290 42.1
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 1.5e-59 234.2 251 43.4
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.2e-58 231.1 277 43.3
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 2.8e-58 229.9 289 40.1
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 1.4e-57 227.6 297 39.7
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 1.3e-55 221.1 246 46.3
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 3.7e-55 219.5 286 38.8
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 4.4e-48 196.1 218 43.1
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.3e-47 194.5 292 37.7
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.2e-47 193.7 287 37.3
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.9e-47 193.4 336 35.7
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.6e-45 186.0 308 36.0
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 3.9e-44 183.0 281 34.5
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.6e-42 177.6 296 35.8
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.0e-41 172.9 259 38.2
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.0e-40 170.6 283 34.3
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 2.0e-40 170.6 286 35.3
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.9e-40 168.3 294 35.4
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.2e-38 163.3 289 34.6
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 9.2e-38 161.8 182 37.9
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 7.8e-37 158.7 283 32.2
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.0e-36 156.8 308 31.8
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.6e-36 155.2 238 38.7
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.3e-35 152.1 290 33.1
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.6e-34 149.8 299 34.8
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 3.6e-34 149.8 310 34.2
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.8e-33 147.5 294 32.0
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.2e-30 135.2 293 31.1
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 2.1e-29 134.0 290 30.3
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.5e-29 133.3 292 29.8
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 3.5e-29 133.3 153 43.1
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 2.8e-26 123.6 282 30.9
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-25 121.7 292 28.4
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.0e-24 117.5 295 28.5
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-15 85.9 86 45.3
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.1e-09 68.6 150 31.3
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.4e-09 68.2 75 41.3


User provided reference genes

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