Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 6.5e-199 697.2 352 100.0
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 3.1e-84 316.2 345 47.8
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 5.0e-82 308.9 326 48.2
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 1.4e-81 307.4 383 42.6
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 1.6e-80 303.9 351 46.7
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 6.1e-80 302.0 373 44.2
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 1.0e-79 301.2 361 45.7
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 3.9e-79 299.3 375 42.9
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 3.9e-79 299.3 382 43.7
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 5.1e-79 298.9 370 43.8
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 1.1e-78 297.7 278 50.7
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 1.9e-78 297.0 368 45.7
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 2.5e-78 296.6 368 45.9
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 4.3e-78 295.8 373 44.0
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 4.3e-78 295.8 375 42.4
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 5.7e-78 295.4 366 44.8
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 1.3e-77 294.3 368 45.1
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 1.6e-77 293.9 373 42.4
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 8.2e-77 291.6 375 42.1
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 8.2e-77 291.6 359 44.8
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 1.1e-76 291.2 365 44.4
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 1.4e-76 290.8 370 43.8
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 1.8e-76 290.4 363 42.4
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 2.4e-76 290.0 372 42.2
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 5.3e-76 288.9 399 39.6
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 9.0e-76 288.1 381 42.8
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 9.0e-76 288.1 373 44.0
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 1.2e-75 287.7 369 40.9
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 1.5e-75 287.3 284 48.6
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 2.0e-75 287.0 386 43.0
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 3.4e-75 286.2 372 43.5
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 5.9e-75 285.4 286 48.6
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.0e-74 284.6 366 43.7
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 1.3e-74 284.3 365 43.3
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 1.3e-74 284.3 328 48.8
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.9e-74 283.1 367 44.4
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 3.8e-74 282.7 363 43.0
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 8.5e-74 281.6 372 41.4
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 1.4e-73 280.8 393 42.7
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 5.5e-73 278.9 368 42.9
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 1.2e-72 277.7 396 42.4
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 2.1e-72 276.9 358 43.3
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 6.1e-72 275.4 377 40.1
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 1.0e-71 274.6 357 43.1
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 2.3e-71 273.5 385 41.0
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 3.9e-71 272.7 364 41.2
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 3.9e-71 272.7 382 42.1
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 6.7e-71 271.9 346 42.5
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 2.0e-70 270.4 386 40.4
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 2.5e-70 270.0 368 41.8
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 2.5e-70 270.0 366 40.7
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 3.3e-70 269.6 382 39.5
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 7.4e-70 268.5 344 42.7
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 1.7e-69 267.3 337 43.0
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 2.8e-69 266.5 369 42.0
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 2.8e-69 266.5 362 42.3
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 6.3e-69 265.4 372 42.2
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.1e-68 264.6 331 45.9
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 1.4e-68 264.2 355 40.3
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 6.9e-68 261.9 347 42.1
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 9.1e-68 261.5 355 41.4
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 1.5e-67 260.8 378 40.7
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 2.0e-67 260.4 359 39.8
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 2.6e-67 260.0 378 39.9
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 2.6e-67 260.0 352 40.6
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 2.6e-67 260.0 378 39.9
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 1.0e-66 258.1 378 39.4
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.2e-66 256.9 380 41.6
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 3.8e-66 256.1 388 38.7
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 5.0e-66 255.8 360 39.2
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 5.0e-66 255.8 349 40.4
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 5.0e-66 255.8 368 40.5
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 1.1e-65 254.6 356 39.6
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 2.5e-65 253.4 356 39.9
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 3.2e-65 253.1 361 38.8
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 4.2e-65 252.7 375 41.3
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 5.5e-65 252.3 258 48.1
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 7.2e-65 251.9 355 40.0
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 7.2e-65 251.9 280 45.0
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 9.4e-65 251.5 356 40.2
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 1.6e-64 250.8 360 40.3
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 1.6e-64 250.8 352 39.8
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 2.1e-64 250.4 365 39.7
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 4.7e-64 249.2 356 41.3
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 6.1e-64 248.8 356 39.0
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 1.0e-63 248.1 356 41.6
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 3.9e-63 246.1 366 40.4
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 1.5e-62 244.2 278 45.0
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 2.0e-62 243.8 273 43.2
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 2.6e-62 243.4 279 45.9
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 3.3e-62 243.0 344 41.3
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 8.2e-61 238.4 399 37.1
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 2.4e-60 236.9 403 36.7
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 2.4e-60 236.9 372 39.8
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 1.2e-59 234.6 357 38.9
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 1.6e-59 234.2 382 39.0
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 2.6e-59 233.4 278 44.6
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 3.5e-59 233.0 340 39.4
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 7.7e-59 231.9 353 38.5
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 3.8e-58 229.6 305 44.6
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 1.0e-55 221.5 230 47.4
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 3.0e-55 219.9 292 42.1
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 5.2e-55 219.2 371 35.3
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 5.2e-55 219.2 300 40.0
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 1.1e-54 218.0 379 35.6
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 2.0e-54 217.2 253 42.3
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 3.3e-54 216.5 230 47.8
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 6.3e-53 212.2 280 39.3
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 1.1e-52 211.5 327 40.4
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 5.3e-52 209.1 391 34.3
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.6e-51 207.6 282 45.4
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 2.0e-51 207.2 256 40.2
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 6.1e-48 195.7 362 36.5
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 1.3e-45 188.0 366 35.5
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 3.7e-45 186.4 263 42.2
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 3.1e-44 183.3 319 35.4
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 9.5e-41 171.8 202 49.0
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 3.0e-39 166.8 212 46.7
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 1.2e-38 164.9 242 42.6
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.8e-36 157.5 178 43.3
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 2.1e-32 144.1 185 41.1
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.0e-31 141.7 179 40.8
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 4.0e-31 139.8 182 41.2
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 1.1e-28 131.7 210 38.1
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 1.7e-26 124.4 112 49.1
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 9.8e-22 108.6 78 60.3
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 3.2e-20 103.6 135 39.3
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 5.4e-20 102.8 88 55.7
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 4.0e-15 86.7 87 44.8
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 5.2e-15 86.3 102 40.2
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 1.5e-14 84.7 91 39.6
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.5e-14 84.7 84 45.2
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 3.4e-14 83.6 102 38.2
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 3.4e-14 83.6 92 38.0
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 1.3e-13 81.6 95 41.1
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.3e-13 81.6 81 45.7
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 2.7e-11 73.9 89 36.0
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 3.5e-11 73.6 63 55.6
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 9.5e-09 65.5 146 34.9


User provided reference genes

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