Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1891.7 1042 100.0
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1298.5 881 72.8
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1250.7 930 67.8
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1248.4 928 67.2
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1247.6 941 65.5
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1234.6 924 68.2
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1222.6 941 65.0
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1219.1 941 65.2
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1203.7 927 65.5
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1200.7 927 66.1
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1199.5 891 65.9
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1196.8 953 64.4
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1196.8 937 65.3
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1196.4 940 63.4
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1192.9 955 63.5
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1192.6 941 63.5
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1189.9 887 65.6
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1189.1 887 65.5
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1187.9 936 65.1
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1187.6 928 65.7
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1186.4 954 62.2
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1185.6 956 62.4
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1185.2 927 65.5
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1185.2 927 65.4
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1184.9 928 64.0
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1184.5 890 65.8
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1184.1 938 64.8
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1182.2 889 65.9
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1181.0 948 64.6
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1180.6 932 65.3
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1177.9 940 64.8
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1177.2 869 66.7
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1177.2 941 64.3
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1176.0 891 65.0
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1175.6 933 64.4
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1175.6 869 65.7
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1174.8 928 64.0
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1174.1 928 64.0
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1171.0 869 66.2
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1170.6 890 65.6
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1170.6 939 62.2
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1169.8 940 63.6
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1169.5 869 65.9
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1169.5 869 66.1
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1169.5 955 63.6
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1169.1 953 62.7
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1168.3 956 62.3
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1168.3 977 60.9
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1168.3 939 64.2
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1167.5 953 61.9
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1167.1 963 60.9
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1162.9 941 62.9
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1161.4 868 66.2
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1159.8 928 63.1
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1156.0 876 64.7
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1156.0 928 62.9
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1154.8 968 61.4
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1154.4 935 63.9
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1154.4 973 62.1
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1153.3 975 61.7
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1152.5 919 63.0
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1149.8 864 64.9
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1149.4 945 62.3
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1149.4 945 62.3
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1148.7 945 62.3
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1148.7 945 62.3
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1148.3 976 60.9
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1145.2 963 62.0
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1143.3 928 61.4
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1143.3 928 61.4
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1141.3 941 62.6
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1141.3 928 61.3
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1137.1 930 62.9
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1134.4 941 61.5
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1127.5 931 61.9
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1126.3 903 61.7
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1124.4 928 61.3
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1124.4 894 62.9
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1117.4 956 61.4
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1117.1 972 61.2
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1114.8 969 60.5
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1114.4 949 60.9
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1107.4 1008 57.3
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1100.5 869 63.2
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1099.3 955 60.7
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1096.3 893 60.6
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1092.8 923 60.1
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1091.3 941 60.5
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1079.3 969 59.1
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 3.6e-311 1071.6 927 59.2
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 3.6e-311 1071.6 1046 56.0
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 4.1e-310 1068.1 955 57.9
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 5.0e-308 1061.2 945 55.6
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 6.8e-305 1050.8 1009 54.7
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 6.4e-303 1044.3 738 69.4
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 4.1e-302 1041.6 927 59.0
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 7.1e-302 1040.8 952 55.4
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 3.9e-300 1035.0 869 60.9
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 1.5e-299 1033.1 1070 51.7
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 6.8e-297 1024.2 986 57.2
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 3.2e-294 1015.4 899 58.1
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 1.4e-286 989.9 918 56.5
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 9.6e-259 897.5 924 52.2
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 1.4e-244 850.5 692 61.8
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 5.1e-244 848.6 690 61.7
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 2.2e-210 736.9 546 66.1
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 1.1e-209 734.6 622 61.7
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 4.7e-205 719.2 633 58.3
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 1.4e-204 717.6 688 54.8
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.8e-151 541.2 570 50.2
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 3.3e-142 510.4 444 57.7
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 3.2e-137 493.8 375 66.4
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 1.1e-126 458.8 370 59.2
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 7.7e-123 446.0 318 68.9
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.8e-114 417.2 448 52.2
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 1.8e-92 345.1 278 61.2
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 4.5e-91 340.5 275 64.7
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 3.6e-88 330.9 1033 27.4
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 1.3e-77 295.8 1030 25.6
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 2.1e-75 288.5 325 47.7
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 7.8e-67 260.0 233 57.1
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 6.6e-66 256.9 276 50.7
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 1.2e-64 252.7 197 63.5
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.6e-64 252.3 278 48.9
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 3.4e-54 218.0 189 57.1
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 9.6e-49 199.9 143 67.1
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.7e-45 189.1 383 33.7
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 2.9e-45 188.3 220 46.4
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 2.3e-42 178.7 168 53.6
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 6.9e-39 167.2 217 45.6
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 4.5e-38 164.5 99 73.7
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 2.2e-37 162.2 103 75.7
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 1.8e-34 152.5 240 41.2
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.8e-32 144.4 149 49.7
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 1.4e-31 142.9 120 59.2
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.8e-30 137.5 258 35.3
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 3.8e-29 134.8 87 71.3
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.4e-28 132.9 108 56.5
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 9.3e-28 130.2 119 54.6
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 6.1e-27 127.5 103 55.3
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 1.9e-25 122.5 231 33.8
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 2.5e-25 122.1 163 45.4
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.3e-24 119.8 93 64.5
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 1.6e-24 119.4 163 44.8
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.2e-20 105.1 80 66.2
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.2e-19 103.2 176 40.3
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.4e-18 99.8 72 70.8
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 6.7e-18 97.4 138 42.0
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 6.7e-18 97.4 138 42.0
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 6.7e-18 97.4 138 42.0
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.5e-17 96.3 65 64.6
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 3.3e-17 95.1 79 54.4
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.2e-16 92.4 66 62.1
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.8e-16 91.3 70 67.1
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.3e-16 90.9 98 48.0
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 1.4e-15 89.7 84 60.7
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 4.1e-15 88.2 86 53.5
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.2e-14 86.7 59 67.8
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.5e-14 84.7 79 51.9
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 9.4e-12 77.0 47 78.7
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.1e-09 70.1 180 34.4
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 3.3e-09 68.6 66 51.5
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 5.7e-09 67.8 57 57.9
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 1.3e-08 66.6 89 48.3
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 4.8e-08 64.7 49 63.3


User provided reference genes

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