Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO143G0139 Selaginella moellendorffii HOM05D001090 ORTHO05D008663 1.3e-36 155.6 67 100.0
Pp3c14_3010 Physcomitrium patens HOM05D001090 ORTHO05D008663 3.1e-17 91.3 68 54.4
SEGI_30951 Sequoiadendron giganteum HOM05D001090 ORTHO05D002119 7.6e-16 86.7 68 55.9
CBR_g8279 Chara braunii HOM05D001090 ORTHO05D008663 4.9e-15 84.0 70 51.4
Lj1g0016545 Lotus japonicus HOM05D001090 ORTHO05D008663 1.6e-10 68.9 67 47.8
AagrBONN_evm.TU.Sc2ySwM_368.2755 Anthoceros agrestis HOM05D002141 ORTHO05D002119 4.8e-10 67.4 69 42.0
SHI09188 Sapria himalayana HOM05D001090 ORTHO05D008663 4.8e-10 67.4 68 47.1
Potri.001G274900 Populus trichocarpa HOM05D003550 ORTHO05D004336 4.0e-09 64.3 73 42.5
Duzib041G0130 Durio zibethinus HOM05D001090 ORTHO05D008663 9.0e-09 63.2 69 46.4
Nn1g08979 Nelumbo nucifera HOM05D001090 ORTHO05D008663 9.0e-09 63.2 70 44.3
Sabra16G0169200 Salix brachista HOM05D003550 ORTHO05D004336 9.0e-09 63.2 73 42.5
CiPaw.15G032400 Carya illinoinensis HOM05D001090 ORTHO05D008663 1.5e-08 62.4 69 44.9
DCAR_018875 Daucus carota HOM05D001090 ORTHO05D008663 1.5e-08 62.4 68 42.6
Medtr3g088535 Medicago truncatula HOM05D001090 ORTHO05D008663 1.5e-08 62.4 73 43.8
Ca_16603_v3 Cicer arietinum L. HOM05D001090 ORTHO05D008663 2.0e-08 62.0 73 45.2
HanXRQChr02g0041931 Helianthus annuus HOM05D001090 ORTHO05D008663 2.6e-08 61.6 67 41.8
vmacro16445 Vaccinium macrocarpon HOM05D001090 ORTHO05D008663 2.6e-08 61.6 66 43.9
Lalb_Chr08g0241151 Lupinus albus HOM05D001090 ORTHO05D008663 3.4e-08 61.2 74 43.2
Pp3c9_15340 Physcomitrium patens HOM05D002141 ORTHO05D002119 3.4e-08 61.2 80 43.8
CSS0021561 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 4.5e-08 60.8 69 43.5
Phvul.009G129300 Phaseolus vulgaris HOM05D001090 ORTHO05D008663 4.5e-08 60.8 70 44.3
Rhsim11G0070600 Rhododendron simsii HOM05D001090 ORTHO05D008663 4.5e-08 60.8 71 40.8
Sed0003425 Sechium edule HOM05D001090 ORTHO05D008663 4.5e-08 60.8 69 42.0
VMungo1309G2387 Vigna mungo HOM05D001090 ORTHO05D008663 4.5e-08 60.8 70 44.3
Pp3c15_14420 Physcomitrium patens HOM05D002141 ORTHO05D002119 5.8e-08 60.5 80 42.5
SMO263G0005 Selaginella moellendorffii HOM05D002141 ORTHO05D002119 5.8e-08 60.5 79 43.0
Hund17320 Selenicereus undatus HOM05D001090 ORTHO05D008663 5.8e-08 60.5 68 42.6
AL1G34800 Arabidopsis lyrata HOM05D001090 ORTHO05D008663 7.6e-08 60.1 69 44.9
arahy.Tifrunner.gnm1.ann1.NR7S6L Arachis hypogaea HOM05D001090 ORTHO05D008663 7.6e-08 60.1 69 43.5
CANSAT64G0357 Cannabis sativa HOM05D002141 ORTHO05D002119 7.6e-08 60.1 80 42.5
Dinv14668 Davidia involucrata HOM05D001090 ORTHO05D008663 7.6e-08 60.1 70 42.9
Mapoly0014s0078 Marchantia polymorpha HOM05D002141 ORTHO05D002119 7.6e-08 60.1 80 42.5
Pp3c14_11620 Physcomitrium patens HOM05D001090 ORTHO05D008663 1.0e-07 59.7 83 38.6
TAR383G0440 Trochodendron aralioides HOM05D002141 ORTHO05D002119 1.0e-07 59.7 80 42.5
Actinidia29485 Actinidia chinensis HOM05D001090 ORTHO05D008663 1.3e-07 59.3 66 42.4
ATR0584G005 Amborella trichopoda HOM05D001090 ORTHO05D008663 1.3e-07 59.3 69 40.6
MELO3C002690.2 Cucumis melo HOM05D001090 ORTHO05D008663 1.3e-07 59.3 69 43.5
CsaV3_1G032930 Cucumis sativus L. HOM05D001090 ORTHO05D008663 1.3e-07 59.3 69 43.5
Glyma.06G116800 Glycine max HOM05D001090 ORTHO05D008663 1.3e-07 59.3 69 42.0
QL01p016949 Quercus lobata HOM05D003550 ORTHO05D004336 1.3e-07 59.3 68 41.2
Atru.chr13.1551 Acer truncatum HOM05D001090 ORTHO05D008663 1.7e-07 58.9 68 42.6
Aqoxy6G00325 Aquilegia oxysepala HOM05D001090 ORTHO05D008663 1.7e-07 58.9 71 40.8
AT1G21650 Arabidopsis thaliana HOM05D001090 ORTHO05D002687 1.7e-07 58.9 69 43.5
AT1G21651 Arabidopsis thaliana HOM05D001090 ORTHO05D008663 1.7e-07 58.9 69 43.5
CARHR022000 Cardamine hirsuta HOM05D001090 ORTHO05D002687 1.7e-07 58.9 69 43.5
FAN15G0022 Fragaria x ananassa HOM05D001090 ORTHO05D002687 1.7e-07 58.9 68 41.2
FAN27G1391 Fragaria x ananassa HOM05D001090 ORTHO05D002687 1.7e-07 58.9 69 43.5
Gohir.A02G071600 Gossypium hirsutum HOM05D001090 ORTHO05D008663 1.7e-07 58.9 69 44.9
Thecc.08G132300 Theobroma cacao HOM05D001090 ORTHO05D008663 1.7e-07 58.9 69 44.9
EL10Ac7g17319 Beta vulgaris HOM05D001090 ORTHO05D008663 2.2e-07 58.5 73 43.8
Cfa018121 Carpinus fangiana HOM05D001090 ORTHO05D008663 2.2e-07 58.5 69 44.9
Aa31LG7G5630 Aethionema arabicum HOM05D001090 ORTHO05D008663 2.9e-07 58.2 69 42.0
arahy.Tifrunner.gnm1.ann1.FIZF7Q Arachis hypogaea HOM05D001090 ORTHO05D008663 2.9e-07 58.2 69 42.0
Gohir.D02G078900 Gossypium hirsutum HOM05D001090 ORTHO05D008663 2.9e-07 58.2 69 44.9
Gorai.005G088100 Gossypium raimondii HOM05D001090 ORTHO05D008663 2.9e-07 58.2 69 44.9
Manes.18G082000 Manihot esculenta HOM05D001090 ORTHO05D008663 2.9e-07 58.2 69 46.4
Psat5g085040 Pisum sativum HOM05D001090 ORTHO05D008663 2.9e-07 58.2 70 42.9
QL09p032725 Quercus lobata HOM05D001090 ORTHO05D008663 2.9e-07 58.2 68 42.6
BcaC05g26082 Brassica carinata HOM05D001090 ORTHO05D008663 3.8e-07 57.8 69 42.0
A06p17720 Brassica napus HOM05D001090 ORTHO05D008663 3.8e-07 57.8 69 42.0
C05p20620 Brassica napus HOM05D001090 ORTHO05D008663 3.8e-07 57.8 69 42.0
BolC5t30760H Brassica oleracea HOM05D001090 ORTHO05D008663 3.8e-07 57.8 69 42.0
BraA06t24864Z Brassica rapa HOM05D001090 ORTHO05D008663 3.8e-07 57.8 69 42.0
AUR62007949 Chenopodium quinoa HOM05D002141 ORTHO05D002119 3.8e-07 57.8 80 45.0
Ciclev10000294m.g Citrus clementina HOM05D001090 ORTHO05D008663 3.8e-07 57.8 68 42.6
COL.COLO4_05689 Corchorus olitorius HOM05D001090 ORTHO05D008663 3.8e-07 57.8 68 42.6
Thhalv10006535m.g Eutrema salsugineum HOM05D001090 ORTHO05D002687 3.8e-07 57.8 69 42.0
FAN24G1236 Fragaria x ananassa HOM05D001090 ORTHO05D002687 3.8e-07 57.8 69 42.0
Potri.019G066500 Populus trichocarpa HOM05D001090 ORTHO05D008663 3.8e-07 57.8 70 44.3
RcHm_v2.0_Chr6g0296591 Rosa chinensis HOM05D001090 ORTHO05D008663 3.8e-07 57.8 69 42.0
Actinidia03422 Actinidia chinensis HOM05D001090 ORTHO05D008663 4.9e-07 57.4 66 40.9
Carub.0001s2108 Capsella rubella HOM05D001090 ORTHO05D008663 4.9e-07 57.4 69 42.0
Eucgr.F03832 Eucalyptus grandis HOM05D001090 ORTHO05D008663 4.9e-07 57.4 69 43.5
Hma1.2p1_0014F.1_g010110 Hydrangea macrophylla HOM05D001090 ORTHO05D008663 4.9e-07 57.4 69 42.0
Hma1.2p1_1129F.1_g259860 Hydrangea macrophylla HOM05D001090 ORTHO05D008663 4.9e-07 57.4 69 42.0
FvH4_2g27740 Fragaria vesca HOM05D001090 ORTHO05D008663 6.5e-07 57.0 69 42.0
FAN20G0562 Fragaria x ananassa HOM05D001090 ORTHO05D002687 6.5e-07 57.0 69 42.0
Lsat_1_v5_gn_1_9840 Lactuca sativa HOM05D001090 ORTHO05D008663 6.5e-07 57.0 68 41.2
BcaB03g15246 Brassica carinata HOM05D002141 ORTHO05D002119 8.4e-07 56.6 80 41.2
BcaC05g29968 Brassica carinata HOM05D002141 ORTHO05D002119 8.4e-07 56.6 80 41.2
CANSAT56G3793 Cannabis sativa HOM05D001090 ORTHO05D008663 8.4e-07 56.6 69 42.0
Gohir.A13G087600 Gossypium hirsutum HOM05D002141 ORTHO05D002119 8.4e-07 56.6 80 43.8
Gohir.D13G093100 Gossypium hirsutum HOM05D002141 ORTHO05D002119 8.4e-07 56.6 80 43.8
Gorai.010G140400 Gossypium raimondii HOM05D002141 ORTHO05D002119 8.4e-07 56.6 80 43.8
Nitab4.5_0002045g0020 Nicotiana tabacum HOM05D001090 ORTHO05D008663 8.4e-07 56.6 68 42.6
Sabra19G0078400 Salix brachista HOM05D001090 ORTHO05D008663 8.4e-07 56.6 69 40.6
BcaB07g32158 Brassica carinata HOM05D001090 ORTHO05D008663 1.1e-06 56.2 69 40.6
Lj7A347T47 Lonicera japonica HOM05D001090 ORTHO05D008663 1.1e-06 56.2 70 40.0
Lj7C349G17 Lonicera japonica HOM05D001090 ORTHO05D002687 1.1e-06 56.2 70 40.0
Hund25196 Selenicereus undatus HOM05D002141 ORTHO05D002119 1.1e-06 56.2 80 42.5
Solyc11g005030.3 Solanum lycopersicum HOM05D001090 ORTHO05D008663 1.1e-06 56.2 68 42.6
Sopen11g001050 Solanum pennellii HOM05D001090 ORTHO05D008663 1.1e-06 56.2 68 42.6
PGSC0003DMG401006052 Solanum tuberosum HOM05D001090 ORTHO05D008663 1.1e-06 56.2 68 44.1
THA.LOC104801358 Tarenaya hassleriana HOM05D002141 ORTHO05D002119 1.1e-06 56.2 82 39.0
BcaC07g40433 Brassica carinata HOM05D002141 ORTHO05D002119 1.4e-06 55.8 80 40.0
MELO3C014558.2 Cucumis melo HOM05D003550 ORTHO05D004336 1.4e-06 55.8 67 35.8
CsaV3_6G038940 Cucumis sativus L. HOM05D003550 ORTHO05D004336 1.4e-06 55.8 67 35.8
Nitab4.5_0001168g0020 Nicotiana tabacum HOM05D001090 ORTHO05D008663 1.4e-06 55.8 68 44.1
Sc15g0007530 Simmondsia chinensis HOM05D001090 ORTHO05D008663 1.4e-06 55.8 76 39.5
TWI32G0149 Tripterygium wilfordii HOM05D001090 ORTHO05D002687 1.4e-06 55.8 69 42.0
A07p35640 Brassica napus HOM05D002141 ORTHO05D002119 1.9e-06 55.5 80 42.5
BolC6t39373H Brassica oleracea HOM05D002141 ORTHO05D002119 1.9e-06 55.5 80 40.0
BraA07t31152Z Brassica rapa HOM05D002141 ORTHO05D002119 1.9e-06 55.5 80 42.5
Sed0016122 Sechium edule HOM05D003550 ORTHO05D004336 1.9e-06 55.5 67 34.3
THA.LOC104813679 Tarenaya hassleriana HOM05D001090 ORTHO05D008663 1.9e-06 55.5 69 40.6
VMungo1080G0047 Vigna mungo HOM05D003550 ORTHO05D004336 1.9e-06 55.5 66 37.9
C06p40590 Brassica napus HOM05D002141 ORTHO05D002119 2.5e-06 55.1 80 40.0
Oeu021884.2 Olea europaea HOM05D001090 ORTHO05D008663 2.5e-06 55.1 68 42.6
Peaxi162Scf01003g00015 Petunia axillaris HOM05D001090 ORTHO05D008663 2.5e-06 55.1 68 44.1
Prupe.1G490500 Prunus persica HOM05D001090 ORTHO05D008663 2.5e-06 55.1 70 45.7
TWI34G0871 Tripterygium wilfordii HOM05D001090 ORTHO05D008663 2.5e-06 55.1 69 42.0
Cpa.g.sc64.146 Carica papaya HOM05D001090 ORTHO05D008663 3.2e-06 54.7 70 44.3
CDE09G1076 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 3.2e-06 54.7 66 36.4
Lj6P782T98 Lonicera japonica HOM05D002141 ORTHO05D002119 3.2e-06 54.7 80 41.2
Potri.010G161100 Populus trichocarpa HOM05D002141 ORTHO05D002119 3.2e-06 54.7 80 40.0
Sabra10G0122500 Salix brachista HOM05D002141 ORTHO05D002119 3.2e-06 54.7 80 40.0
TAR369G1080 Trochodendron aralioides HOM05D003550 ORTHO05D004336 3.2e-06 54.7 66 39.4
Ah.15g092020 Amaranthus hybridus HOM05D001090 ORTHO05D008663 4.2e-06 54.3 74 43.2
AL2G28440 Arabidopsis lyrata HOM05D002141 ORTHO05D002119 4.2e-06 54.3 80 43.8
AT1G69330 Arabidopsis thaliana HOM05D002141 ORTHO05D002119 4.2e-06 54.3 80 43.8
MSTRG.25363 Avicennia marina HOM05D001090 ORTHO05D008663 4.2e-06 54.3 68 41.2
CARHR062220 Cardamine hirsuta HOM05D002141 ORTHO05D002119 4.2e-06 54.3 80 43.8
TWI38G1858 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 4.2e-06 54.3 66 37.9
CDE02G3571 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 5.5e-06 53.9 66 36.4
COL.COLO4_27924 Corchorus olitorius HOM05D002141 ORTHO05D002119 5.5e-06 53.9 80 41.2
Actinidia06226 Actinidia chinensis HOM05D003550 ORTHO05D004336 7.1e-06 53.5 66 36.4
Actinidia10150 Actinidia chinensis HOM05D003550 ORTHO05D004336 7.1e-06 53.5 66 36.4
Thhalv10019012m.g Eutrema salsugineum HOM05D002141 ORTHO05D002119 7.1e-06 53.5 80 43.8
Medtr0137s0080 Medicago truncatula HOM05D003550 ORTHO05D004336 7.1e-06 53.5 66 37.9
Medtr3g014090 Medicago truncatula HOM05D003550 ORTHO05D004336 7.1e-06 53.5 66 37.9
Sp5g24390 Schrenkiella parvula HOM05D002141 ORTHO05D002119 7.1e-06 53.5 80 43.8
unitig_0.g2283 Utricularia gibba HOM05D001090 ORTHO05D008663 7.1e-06 53.5 68 41.2
Aa31LG4G11540 Aethionema arabicum HOM05D002141 ORTHO05D002119 9.3e-06 53.1 80 40.0
MELO3C012481.2 Cucumis melo HOM05D003550 ORTHO05D004336 9.3e-06 53.1 66 37.9
CsaV3_5G036850 Cucumis sativus L. HOM05D003550 ORTHO05D004336 9.3e-06 53.1 66 37.9
Migut.C01061 Erythranthe guttata HOM05D001090 ORTHO05D008663 9.3e-06 53.1 68 41.2
Thecc.02G335400 Theobroma cacao HOM05D002141 ORTHO05D002119 9.3e-06 53.1 80 38.8


User provided reference genes

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