Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 2266.9 1150 100.0
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1563.5 1154 68.5
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1528.1 1162 67.0
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1522.3 1161 67.4
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1520.8 1146 66.4
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1506.1 1172 66.6
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1491.5 1178 64.6
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1486.9 1095 68.0
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1482.2 1177 63.8
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1478.4 1173 64.8
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1467.2 1170 63.8
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1465.3 1170 63.8
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1464.9 1171 63.8
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1464.5 1169 64.2
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1462.2 1153 64.5
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1462.2 1165 63.4
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1461.0 1166 63.6
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1460.7 1172 63.8
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1459.1 1164 63.9
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1458.4 1168 64.0
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1458.0 1161 63.8
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1457.6 1161 63.9
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1457.6 1161 64.0
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1456.8 1159 64.0
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1455.7 1158 64.2
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1454.9 1160 64.0
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1454.5 1163 63.6
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1453.0 1180 62.5
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1452.6 1158 63.9
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1452.2 1165 63.4
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1451.0 1157 63.5
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1450.3 1162 63.3
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1449.5 1160 63.4
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1448.3 1163 63.5
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1446.8 1166 63.0
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1446.8 1165 63.3
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1446.8 1167 63.7
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1445.6 1160 63.4
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1444.9 1158 63.5
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1444.9 1162 63.4
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1444.9 1154 63.5
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1444.5 1162 63.3
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1444.5 1159 63.7
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1442.9 1168 63.1
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1442.6 1204 62.3
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1442.6 1159 62.9
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1442.6 1154 63.2
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1442.2 1159 63.5
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1442.2 1153 63.2
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1442.2 1173 62.5
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1439.9 1167 63.1
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1437.2 1158 63.1
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1436.8 1156 63.3
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1436.8 1164 62.5
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1434.9 1174 61.8
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1434.5 1160 62.7
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1434.1 1163 62.8
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1434.1 1161 62.8
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1434.1 1168 62.8
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1433.3 1163 62.8
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1432.9 1169 62.6
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1432.2 1168 62.6
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1431.8 1161 62.6
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1431.4 1163 62.7
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1431.0 1168 62.4
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1431.0 1197 61.5
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1430.6 1162 63.3
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1429.8 1208 61.7
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1429.1 1157 62.3
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1426.0 1149 63.5
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1424.1 1176 61.4
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1424.1 1168 62.3
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1422.1 1161 62.4
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1419.4 1159 63.2
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1418.7 1162 62.0
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1417.1 1091 65.2
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1416.4 1202 61.3
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1411.4 1163 63.1
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1407.1 1104 64.0
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1406.0 1166 61.7
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1403.7 1170 61.3
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1403.3 1168 61.5
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1401.7 1166 61.3
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1401.3 1167 61.4
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1400.6 1172 61.3
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1399.4 1170 61.1
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1399.4 1170 61.1
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1399.4 1166 61.2
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1398.3 1167 61.4
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1397.5 1172 61.2
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1393.6 1158 61.0
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1389.4 1186 60.4
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1389.4 1165 60.9
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1389.0 1108 63.3
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1387.5 1166 61.4
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1376.3 1180 60.6
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1363.6 1175 60.2
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1328.5 1320 54.7
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1327.0 1055 64.2
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1323.5 1160 57.7
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1321.2 1160 58.0
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1313.5 1185 58.5
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1228.0 993 63.4
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1223.0 917 66.7
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1177.5 1158 55.5
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 0.0e+00 1172.9 1167 50.9
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1155.6 936 62.9
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1140.6 842 68.5
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1122.5 801 69.8
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1090.9 844 65.6
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 1.0e-309 1067.0 800 67.0
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 7.3e-276 954.5 780 61.5
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 1.2e-257 894.0 699 65.7
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 5.9e-233 812.0 654 62.1
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 4.2e-223 779.2 585 68.2
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.8e-219 766.5 745 56.5
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 8.5e-216 755.0 581 66.8
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.0e-212 743.8 549 67.9
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 7.0e-194 682.2 632 57.8
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 4.6e-193 679.5 582 60.1
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 1.1e-181 641.7 478 67.8
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.5e-180 637.9 528 61.2
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 4.3e-143 513.5 466 54.9
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 6.1e-137 493.0 409 59.9
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 3.0e-112 411.0 360 58.1
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 8.0e-97 359.8 380 48.4
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 8.3e-94 349.7 353 53.0
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 8.1e-73 280.0 268 52.6
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 2.9e-70 271.6 195 68.2
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 3.0e-43 181.8 169 56.8
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 4.6e-36 157.9 146 56.8
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.1e-34 153.3 129 61.2
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 1.2e-28 133.3 105 62.9
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 2.1e-28 132.5 87 71.3
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 3.9e-27 128.3 73 76.7
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 1.1e-26 126.7 109 61.5
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 3.1e-24 118.6 94 62.8
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 3.1e-16 92.0 184 36.4
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 3.4e-15 88.6 101 46.5
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 3.8e-14 85.1 87 50.6
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 7.9e-12 77.4 50 70.0
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 3.0e-11 75.5 50 70.0
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 3.9e-11 75.1 50 68.0
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 2.9e-06 58.9 382 26.7


User provided reference genes

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