Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 4.7e-103 377.9 191 100.0
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 7.4e-48 194.5 149 61.1
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 4.5e-45 185.3 151 58.3
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 5.9e-45 184.9 156 56.4
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 3.8e-44 182.2 151 57.0
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 8.5e-44 181.0 151 58.3
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 1.4e-43 180.3 149 57.7
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.9e-43 179.9 155 57.4
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 1.9e-43 179.9 155 52.9
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 4.2e-43 178.7 150 57.3
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 5.5e-43 178.3 160 55.6
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 5.5e-43 178.3 154 56.5
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 7.2e-43 177.9 165 52.7
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 7.2e-43 177.9 161 52.8
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 9.3e-43 177.6 151 55.6
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 9.3e-43 177.6 154 53.2
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 1.2e-42 177.2 154 54.5
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 1.2e-42 177.2 152 54.6
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 2.1e-42 176.4 163 53.4
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 2.1e-42 176.4 152 55.9
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 2.7e-42 176.0 159 56.0
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 2.7e-42 176.0 149 55.7
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 2.7e-42 176.0 149 57.7
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 3.6e-42 175.6 149 57.0
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 3.6e-42 175.6 152 55.3
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 3.6e-42 175.6 153 54.9
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.6e-42 175.6 175 51.4
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 4.6e-42 175.3 154 52.6
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 4.6e-42 175.3 162 54.9
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 4.6e-42 175.3 151 55.0
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 4.6e-42 175.3 157 54.8
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 4.6e-42 175.3 152 55.3
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 6.1e-42 174.9 174 52.3
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 6.1e-42 174.9 155 54.8
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 6.1e-42 174.9 151 55.6
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 7.9e-42 174.5 151 54.3
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 7.9e-42 174.5 181 50.3
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 7.9e-42 174.5 152 55.3
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.0e-41 174.1 159 54.7
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 1.0e-41 174.1 149 56.4
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 1.0e-41 174.1 157 54.8
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.0e-41 174.1 149 55.0
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 1.3e-41 173.7 159 54.7
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 1.3e-41 173.7 159 54.7
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.3e-41 173.7 152 52.0
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 1.3e-41 173.7 151 55.0
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.3e-41 173.7 151 54.3
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.8e-41 173.3 162 54.9
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 2.3e-41 172.9 154 55.2
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 2.3e-41 172.9 160 54.4
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.3e-41 172.9 157 54.1
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 3.0e-41 172.6 149 55.0
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 3.0e-41 172.6 154 53.2
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 3.0e-41 172.6 151 53.6
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 3.0e-41 172.6 149 57.0
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 3.0e-41 172.6 152 55.3
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 3.9e-41 172.2 159 54.1
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 3.9e-41 172.2 151 52.3
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 5.1e-41 171.8 159 54.1
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 5.1e-41 171.8 151 54.3
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 5.1e-41 171.8 159 54.1
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 5.1e-41 171.8 151 54.3
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 5.1e-41 171.8 155 55.5
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 5.1e-41 171.8 171 52.0
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 6.7e-41 171.4 163 52.1
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 6.7e-41 171.4 155 52.3
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 6.7e-41 171.4 154 54.5
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 8.7e-41 171.0 151 54.3
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 8.7e-41 171.0 151 54.3
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 8.7e-41 171.0 151 54.3
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 1.1e-40 170.6 149 55.7
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 1.1e-40 170.6 159 53.5
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 1.1e-40 170.6 150 53.3
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 1.5e-40 170.2 158 53.8
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 1.5e-40 170.2 151 55.0
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 1.5e-40 170.2 155 54.2
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.5e-40 170.2 166 50.6
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.9e-40 169.9 190 46.3
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 2.5e-40 169.5 151 54.3
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 3.3e-40 169.1 158 53.8
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 3.3e-40 169.1 152 53.9
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.3e-40 169.1 149 53.0
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 3.3e-40 169.1 149 53.0
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 4.3e-40 168.7 151 54.3
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 4.3e-40 168.7 152 53.3
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 4.3e-40 168.7 152 54.6
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 5.7e-40 168.3 155 52.3
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 5.7e-40 168.3 150 52.7
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 7.4e-40 167.9 149 53.0
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 9.7e-40 167.5 157 54.8
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 9.7e-40 167.5 151 51.7
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 9.7e-40 167.5 152 54.6
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 1.6e-39 166.8 151 53.0
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 1.6e-39 166.8 151 53.6
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.2e-39 166.4 151 55.6
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 2.2e-39 166.4 151 53.0
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.8e-39 166.0 151 55.0
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 2.8e-39 166.0 154 51.3
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 2.8e-39 166.0 153 51.6
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 4.8e-39 165.2 159 51.6
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 4.8e-39 165.2 157 52.2
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 4.8e-39 165.2 164 50.0
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 6.3e-39 164.9 151 51.0
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 6.3e-39 164.9 166 48.8
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 8.2e-39 164.5 149 53.0
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 1.4e-38 163.7 155 49.7
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.8e-38 163.3 136 58.8
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 1.8e-38 163.3 149 53.0
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 1.8e-38 163.3 149 53.0
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 1.8e-38 163.3 153 50.3
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.4e-38 162.9 151 54.3
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 2.4e-38 162.9 148 54.7
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 5.3e-38 161.8 140 55.0
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 6.9e-38 161.4 146 54.8
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 9.1e-38 161.0 153 51.0
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 1.2e-37 160.6 151 53.0
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.2e-37 160.6 135 56.3
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.5e-37 160.2 149 53.0
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.5e-37 160.2 149 53.0
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.0e-37 159.8 149 52.3
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 2.0e-37 159.8 148 50.7
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 3.4e-37 159.1 142 55.6
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 3.4e-37 159.1 152 50.7
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 5.9e-37 158.3 157 52.9
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 7.7e-37 157.9 152 50.0
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 1.7e-36 156.8 172 44.8
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 1.7e-36 156.8 152 48.7
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 2.2e-36 156.4 158 50.0
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 2.9e-36 156.0 153 51.6
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 5.0e-36 155.2 149 52.3
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 6.5e-36 154.8 187 45.5
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 2.5e-35 152.9 135 56.3
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 4.2e-35 152.1 127 56.7
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 7.2e-35 151.4 119 61.3
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 1.6e-34 150.2 149 49.0
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 2.1e-34 149.8 178 46.6
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.8e-33 146.7 206 41.3
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 3.0e-33 146.0 175 45.7
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 3.9e-33 145.6 128 57.0
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 5.1e-33 145.2 120 58.3
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.5e-32 143.7 120 57.5
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 5.7e-32 141.7 123 54.5
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 2.8e-31 139.4 120 55.0
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 3.7e-31 139.0 135 50.4
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 3.7e-31 139.0 124 55.6
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 6.9e-30 134.8 149 49.7
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 4.5e-29 132.1 120 50.8
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 8.5e-28 127.9 117 56.4
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 1.4e-27 127.1 109 57.8
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 3.6e-26 122.5 110 53.6
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 1.8e-25 120.2 93 62.4
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 6.7e-25 118.2 104 54.8
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 9.7e-24 114.4 109 52.3
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 2.7e-18 96.3 93 52.7
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 2.3e-17 93.2 90 50.0
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 6.7e-17 91.7 87 54.0
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 2.0e-13 80.1 90 46.7
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 4.2e-11 72.4 135 34.1
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.0e-09 67.8 90 33.3
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 2.4e-06 56.6 47 53.2


User provided reference genes

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