Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO143G0054 Selaginella moellendorffii HOM05D004884 ORTHO05D005873 3.3e-80 301.6 148 100.0
MBI04_g07835_MAGBIO Magnolia biondii HOM05D004884 ORTHO05D005873 5.3e-62 241.1 146 77.4
TAR636G0424 Trochodendron aralioides HOM05D004884 ORTHO05D005873 7.7e-61 237.3 146 75.3
PSO170G2441 Papaver somniferum HOM05D004884 ORTHO05D005873 2.2e-60 235.7 146 75.3
Aqoxy1G02408 Aquilegia oxysepala HOM05D004884 ORTHO05D005873 8.5e-60 233.8 143 76.2
PSO455G0277 Papaver somniferum HOM05D004884 ORTHO05D005873 8.5e-60 233.8 146 74.0
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 1.1e-59 233.4 146 74.0
Pp3c18_11860 Physcomitrium patens HOM05D004884 ORTHO05D005873 1.1e-59 233.4 146 74.7
QL02p021869 Quercus lobata HOM05D004884 ORTHO05D005873 1.1e-59 233.4 146 74.7
Atru.chr1.2995 Acer truncatum HOM05D004884 ORTHO05D005873 1.5e-59 233.0 146 74.0
Ciclev10026708m.g Citrus clementina HOM05D004884 ORTHO05D005873 1.5e-59 233.0 143 75.5
Nn2g12037 Nelumbo nucifera HOM05D004884 ORTHO05D005873 1.9e-59 232.6 146 75.3
Manes.04G114100 Manihot esculenta HOM05D004884 ORTHO05D005873 2.5e-59 232.3 146 75.3
Sed0027624 Sechium edule HOM05D004884 ORTHO05D005873 7.2e-59 230.7 143 74.8
ClCG05G016940 Citrullus lanatus HOM05D004884 ORTHO05D005873 2.1e-58 229.2 143 74.1
MELO3C003694.2 Cucumis melo HOM05D004884 ORTHO05D005873 2.1e-58 229.2 143 74.1
CsaV3_3G046450 Cucumis sativus L. HOM05D004884 ORTHO05D005873 2.7e-58 228.8 143 74.1
Glyma.07G031300 Glycine max HOM05D004884 ORTHO05D005873 2.7e-58 228.8 146 72.6
Zm00001eb064920 Zea mays HOM05D004884 ORTHO05D005873 2.7e-58 228.8 146 71.9
THA.LOC104808231 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 3.6e-58 228.4 146 73.3
Cfa013154 Carpinus fangiana HOM05D004884 ORTHO05D005873 4.7e-58 228.0 146 71.2
Potri.001G193100 Populus trichocarpa HOM05D004884 ORTHO05D005873 4.7e-58 228.0 146 73.3
Sabra01G0135700 Salix brachista HOM05D004884 ORTHO05D005873 4.7e-58 228.0 146 73.3
THA.LOC104812503 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 6.1e-58 227.6 146 72.6
Gohir.D10G076700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 8.0e-58 227.3 146 71.9
Cc04_g04240 Coffea canephora HOM05D004884 ORTHO05D005873 1.0e-57 226.9 143 74.1
ECA240G3509 Erigeron canadensis HOM05D004884 ORTHO05D005873 1.0e-57 226.9 146 73.3
Eucgr.F02527 Eucalyptus grandis HOM05D004884 ORTHO05D005873 1.0e-57 226.9 143 75.5
Glyma.08G211500 Glycine max HOM05D004884 ORTHO05D005873 1.0e-57 226.9 146 72.6
GSVIVG01017313001 Vitis vinifera HOM05D004884 ORTHO05D005873 1.0e-57 226.9 146 74.7
TWI75G0638 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 1.4e-57 226.5 143 72.7
ECA247G2927 Erigeron canadensis HOM05D001354 ORTHO05D002582 1.8e-57 226.1 146 73.3
Lalb_Chr04g0262431 Lupinus albus HOM05D004884 ORTHO05D005873 1.8e-57 226.1 146 71.9
Psat5g301920 Pisum sativum HOM05D004884 ORTHO05D005873 1.8e-57 226.1 146 71.9
CiPaw.08G011500 Carya illinoinensis HOM05D004884 ORTHO05D005873 2.3e-57 225.7 146 71.2
Dinv30589 Davidia involucrata HOM05D004884 ORTHO05D005873 2.3e-57 225.7 146 71.9
Duzib235G0621 Durio zibethinus HOM05D004884 ORTHO05D005873 2.3e-57 225.7 146 71.9
Lalb_Chr22g0350881 Lupinus albus HOM05D004884 ORTHO05D005873 2.3e-57 225.7 146 73.3
PGR031G3479 Punica granatum HOM05D004884 ORTHO05D005873 2.3e-57 225.7 146 73.3
AL1G27470 Arabidopsis lyrata HOM05D004884 ORTHO05D005873 3.0e-57 225.3 146 72.6
AT1G15370 Arabidopsis thaliana HOM05D004884 ORTHO05D005873 3.0e-57 225.3 146 72.6
Migut.D01065 Erythranthe guttata HOM05D004884 ORTHO05D005873 3.0e-57 225.3 146 72.6
Oeu045160.1 Olea europaea HOM05D004884 ORTHO05D005873 3.0e-57 225.3 146 72.6
VMungo0331G0880 Vigna mungo HOM05D004884 ORTHO05D005873 3.0e-57 225.3 146 71.9
CARHR015900 Cardamine hirsuta HOM05D004884 ORTHO05D005873 4.0e-57 224.9 146 72.6
Lsat_1_v5_gn_1_2440 Lactuca sativa HOM05D004884 ORTHO05D005873 4.0e-57 224.9 146 71.9
Lj3g0000080 Lotus japonicus HOM05D004884 ORTHO05D005873 4.0e-57 224.9 146 71.2
COL.COLO4_12946 Corchorus olitorius HOM05D004884 ORTHO05D005873 5.2e-57 224.6 146 71.9
Thecc.06G021400 Theobroma cacao HOM05D004884 ORTHO05D005873 5.2e-57 224.6 146 71.2
unitig_747.g21296 Utricularia gibba HOM05D004884 ORTHO05D005873 5.2e-57 224.6 143 72.7
Carub.0001s1514 Capsella rubella HOM05D004884 ORTHO05D005873 6.7e-57 224.2 146 71.9
HanXRQChr02g0046821 Helianthus annuus HOM05D004884 ORTHO05D005873 6.7e-57 224.2 146 71.9
Mapoly0005s0226 Marchantia polymorpha HOM05D004884 ORTHO05D005873 6.7e-57 224.2 148 70.3
Phvul.010G154800 Phaseolus vulgaris HOM05D004884 ORTHO05D005873 6.7e-57 224.2 146 71.2
SalBow3G1656 Salvia bowleyana HOM05D004884 ORTHO05D005873 6.7e-57 224.2 143 73.4
MSTRG.9432 Avicennia marina HOM05D004884 ORTHO05D005873 8.8e-57 223.8 143 72.0
MD17G1208900 Malus domestica HOM05D004884 ORTHO05D005873 8.8e-57 223.8 143 72.7
QL05p029075 Quercus lobata HOM05D004884 ORTHO05D005873 8.8e-57 223.8 146 71.9
Hma1.2p1_0515F.1_g170110 Hydrangea macrophylla HOM05D004884 ORTHO05D005873 1.2e-56 223.4 143 72.7
Prupe.3G084300 Prunus persica HOM05D004884 ORTHO05D005873 1.2e-56 223.4 146 71.2
Medtr2g103690 Medicago truncatula HOM05D004884 ORTHO05D005873 1.5e-56 223.0 146 71.2
Oeu052257.1 Olea europaea HOM05D004884 ORTHO05D005873 1.5e-56 223.0 146 71.2
Actinidia18100 Actinidia chinensis HOM05D004884 ORTHO05D005873 2.6e-56 222.2 146 71.2
CSS0003587 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 3.3e-56 221.9 146 71.2
Gohir.A10G074700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 3.3e-56 221.9 146 70.5
SGA_v2.0_scaffold117G32369 Striga asiatica HOM05D004884 ORTHO05D005873 3.3e-56 221.9 146 71.2
Sed0022166 Sechium edule HOM05D004884 ORTHO05D005873 4.4e-56 221.5 140 74.3
TWI34G0752 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 4.4e-56 221.5 146 67.8
RcHm_v2.0_Chr2g0135941 Rosa chinensis HOM05D004884 ORTHO05D005873 5.7e-56 221.1 146 70.5
BcaC07g41506 Brassica carinata HOM05D004884 ORTHO05D005873 7.5e-56 220.7 146 71.2
BolC8t52049H Brassica oleracea HOM05D004884 ORTHO05D005873 7.5e-56 220.7 146 71.2
Sp1g13700 Schrenkiella parvula HOM05D004884 ORTHO05D005873 7.5e-56 220.7 146 71.2
BcaB03g14545 Brassica carinata HOM05D004884 ORTHO05D005873 9.7e-56 220.3 146 71.2
BcaC05g25475 Brassica carinata HOM05D004884 ORTHO05D005873 9.7e-56 220.3 146 71.2
BcaC05g25490 Brassica carinata HOM05D004884 ORTHO05D005873 9.7e-56 220.3 146 71.2
A06p11400 Brassica napus HOM05D004884 ORTHO05D005873 9.7e-56 220.3 146 71.2
A09p61460 Brassica napus HOM05D004884 ORTHO05D005873 9.7e-56 220.3 146 71.2
C05p13510 Brassica napus HOM05D004884 ORTHO05D005873 9.7e-56 220.3 146 71.2
C08p45030 Brassica napus HOM05D004884 ORTHO05D005873 9.7e-56 220.3 146 71.2
BolC5t30088H Brassica oleracea HOM05D004884 ORTHO05D005873 9.7e-56 220.3 146 71.2
BraA06t24317Z Brassica rapa HOM05D004884 ORTHO05D005873 9.7e-56 220.3 146 71.2
BraA09t41517Z Brassica rapa HOM05D004884 ORTHO05D005873 9.7e-56 220.3 146 71.2
Thhalv10009024m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 9.7e-56 220.3 146 71.2
AUR62012381 Chenopodium quinoa HOM05D004884 ORTHO05D005873 1.3e-55 219.9 146 71.2
CAN.G407.94 Capsicum annuum HOM05D004884 ORTHO05D005873 2.2e-55 219.2 146 69.9
Solyc06g068080.4 Solanum lycopersicum HOM05D004884 ORTHO05D005873 2.2e-55 219.2 143 71.3
Sopen06g025360 Solanum pennellii HOM05D004884 ORTHO05D005873 2.2e-55 219.2 143 71.3
PGSC0003DMG400028511 Solanum tuberosum HOM05D004884 ORTHO05D005873 2.2e-55 219.2 143 71.3
vmacro20098 Vaccinium macrocarpon HOM05D004884 ORTHO05D005873 3.7e-55 218.4 143 69.9
Gohir.D06G099800 Gossypium hirsutum HOM05D004884 ORTHO05D005873 4.8e-55 218.0 143 71.3
FvH4_6g29940 Fragaria vesca HOM05D004884 ORTHO05D005873 6.3e-55 217.6 146 69.9
FAN14G1538 Fragaria x ananassa HOM05D004884 ORTHO05D005873 6.3e-55 217.6 146 69.9
Solyc03g116600.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 8.2e-55 217.2 146 68.5
Sopen03g035510 Solanum pennellii HOM05D004884 ORTHO05D005873 8.2e-55 217.2 146 68.5
Rhsim10G0061400 Rhododendron simsii HOM05D004884 ORTHO05D005873 1.1e-54 216.9 143 69.2
FAN09G2574 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.8e-54 216.1 146 69.2
PGSC0003DMG400000635 Solanum tuberosum HOM05D004884 ORTHO05D005873 1.8e-54 216.1 146 68.5
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.4e-54 215.7 133 75.9
AagrBONN_evm.TU.Sc2ySwM_368.2705 Anthoceros agrestis HOM05D004884 ORTHO05D005873 2.4e-54 215.7 150 67.3
Gorai.010G114700 Gossypium raimondii HOM05D004884 ORTHO05D005873 3.1e-54 215.3 143 70.6
FAN02G1988 Fragaria x ananassa HOM05D004884 ORTHO05D005873 4.1e-54 214.9 146 69.2
Peaxi162Scf00207g00728 Petunia axillaris HOM05D004884 ORTHO05D005873 9.1e-54 213.8 142 71.8
Thhalv10019295m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 2.0e-53 212.6 146 69.2
EL10Ac2g04219 Beta vulgaris HOM05D004884 ORTHO05D005873 1.7e-52 209.5 156 64.1
FAN05G0038 Fragaria x ananassa HOM05D004884 ORTHO05D005873 5.0e-52 208.0 166 62.0
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 8.5e-52 207.2 139 70.5
Solyc11g008330.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 7.2e-51 204.1 146 65.1
Aa31LG4G430 Aethionema arabicum HOM05D004884 ORTHO05D005873 8.0e-50 200.7 130 71.5
AUR62012868 Chenopodium quinoa HOM05D004884 ORTHO05D005873 5.2e-49 198.0 148 63.5
Glyma.15G008700 Glycine max HOM05D004884 ORTHO05D005873 5.2e-49 198.0 128 71.9
CSS0011163 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 8.8e-49 197.2 129 71.3
AUR62031521 Chenopodium quinoa HOM05D004884 ORTHO05D005873 2.0e-48 196.1 196 52.6
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 2.6e-48 195.7 122 74.6
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 2.6e-48 195.7 122 74.6
Sc23g0006790 Simmondsia chinensis HOM05D004884 ORTHO05D005873 5.7e-48 194.5 122 73.0
Sabra06G0198100 Salix brachista HOM05D004884 ORTHO05D005873 2.2e-47 192.6 122 70.5
EL10Ac9g22900 Beta vulgaris HOM05D004884 ORTHO05D005873 2.8e-47 192.2 146 61.0
Gorai.011G082800 Gossypium raimondii HOM05D004884 ORTHO05D005873 2.8e-47 192.2 122 71.3
SalBow6G6988 Salvia bowleyana HOM05D004884 ORTHO05D005873 6.3e-47 191.0 122 73.0
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 8.3e-47 190.7 130 70.0
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.6e-45 186.4 122 72.1
Actinidia36285 Actinidia chinensis HOM05D004884 ORTHO05D005873 2.7e-45 185.7 122 71.3
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 1.0e-44 183.7 118 71.2
Potri.006G253700 Populus trichocarpa HOM05D004884 ORTHO05D005873 4.2e-43 178.3 143 60.8
Nitab4.5_0006187g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 9.5e-43 177.2 128 64.8
Peaxi162Scf00145g01210 Petunia axillaris HOM05D004884 ORTHO05D005873 3.6e-42 175.3 127 63.0
Peaxi162Scf00332g00767 Petunia axillaris HOM05D004884 ORTHO05D005873 4.0e-41 171.8 128 65.6
CAN.G321.60 Capsicum annuum HOM05D004884 ORTHO05D005873 1.5e-40 169.9 119 64.7
CBR_g8585 Chara braunii HOM05D004884 ORTHO05D005873 5.7e-40 167.9 143 55.9
BcaC07g41508 Brassica carinata HOM05D004884 ORTHO05D005873 3.4e-32 142.1 119 59.7
QL05p029040 Quercus lobata HOM05D004884 ORTHO05D005873 9.8e-32 140.6 113 61.9
Sopen11g004140 Solanum pennellii HOM05D004884 ORTHO05D005873 1.4e-30 136.7 146 50.0
Gorai.001G184900 Gossypium raimondii HOM05D004884 ORTHO05D005873 2.4e-30 136.0 146 49.3
Gohir.D07G161600 Gossypium hirsutum HOM05D004884 ORTHO05D005873 4.6e-29 131.7 142 49.3
Nitab4.5_0005235g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.1e-27 127.1 118 54.2
Oeu024660.1 Olea europaea HOM05D004884 ORTHO05D005873 1.5e-27 126.7 81 70.4
Gohir.D13G076450 Gossypium hirsutum HOM05D004884 ORTHO05D005873 3.4e-24 115.5 82 64.6
Gorai.013G087100 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.1e-22 110.5 87 60.9
Haze_21525 Corylus avellana HOM05D004884 ORTHO05D005873 1.9e-22 109.8 152 44.7
Nn8g39461 Nelumbo nucifera HOM05D004884 ORTHO05D005873 5.1e-20 101.7 63 73.0
MCO11G456 Micromonas commoda HOM05D004884 ORTHO05D005873 6.6e-20 101.3 152 39.5
Hund04518 Selenicereus undatus HOM05D004884 ORTHO05D005873 3.6e-18 95.5 58 74.1
Cre12.g561200 Chlamydomonas reinhardtii HOM05D004884 ORTHO05D005873 3.1e-17 92.4 142 35.2
DCAR_015322 Daucus carota HOM05D004884 ORTHO05D005873 1.2e-16 90.5 58 70.7
Gohir.A06G098210 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.5e-16 90.1 62 67.7
Nitab4.5_0001450g0150 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.5e-16 90.1 86 51.2
Nitab4.5_0000620g0040 Nicotiana tabacum HOM05D004884 ORTHO05D005873 5.8e-16 88.2 64 64.1
PRCOL_00001860 Prasinoderma coloniale HOM05D004884 ORTHO05D005873 1.3e-15 87.0 140 33.6
TPR.G29435 Trifolium pratense HOM05D004884 ORTHO05D005873 1.1e-14 84.0 46 76.1
Gohir.A13G076901 Gossypium hirsutum HOM05D004884 ORTHO05D005873 4.1e-14 82.0 128 38.3
Gohir.D01G156500 Gossypium hirsutum HOM05D004884 ORTHO05D005873 3.0e-12 75.9 48 72.9
COL.COLO4_03417 Corchorus olitorius HOM05D002096 ORTHO05D002203 1.4e-06 57.0 127 27.6


User provided reference genes

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