Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 2.3e-87 325.5 155 100.0
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 6.2e-69 264.2 155 78.1
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 1.4e-68 263.1 154 76.0
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 2.6e-67 258.8 155 75.5
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 2.9e-66 255.4 155 74.2
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 1.2e-61 240.0 151 72.8
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 1.6e-61 239.6 150 72.0
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 3.6e-61 238.4 151 70.9
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 1.1e-60 236.9 151 71.5
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 3.1e-60 235.3 151 70.9
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 4.0e-60 235.0 149 70.5
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 3.4e-59 231.9 151 68.2
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 4.4e-59 231.5 151 71.5
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 4.4e-59 231.5 151 68.9
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 5.8e-59 231.1 153 68.0
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 5.8e-59 231.1 152 67.1
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.3e-58 229.9 151 68.2
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 2.2e-58 229.2 152 71.7
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 4.9e-58 228.0 152 66.4
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 6.4e-58 227.6 151 70.9
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 6.4e-58 227.6 151 67.5
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 8.3e-58 227.3 151 67.5
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.4e-57 226.5 151 67.5
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 1.9e-57 226.1 150 68.0
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 1.9e-57 226.1 151 70.2
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 3.2e-57 225.3 151 66.2
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 5.4e-57 224.6 149 71.1
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 7.1e-57 224.2 151 70.9
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 1.2e-56 223.4 153 67.3
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 1.2e-56 223.4 152 64.5
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 1.6e-56 223.0 151 66.9
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 2.7e-56 222.2 151 69.5
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 2.7e-56 222.2 151 68.2
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 2.7e-56 222.2 162 63.0
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 4.6e-56 221.5 151 66.2
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 6.0e-56 221.1 150 67.3
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 1.0e-55 220.3 151 69.5
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 3.9e-55 218.4 151 67.5
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 3.9e-55 218.4 151 64.2
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 5.1e-55 218.0 150 66.7
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 6.6e-55 217.6 150 66.7
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 6.6e-55 217.6 151 64.9
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 8.6e-55 217.2 138 70.3
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 1.1e-54 216.9 151 68.9
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 1.5e-54 216.5 151 66.9
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 2.5e-54 215.7 152 66.4
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 3.3e-54 215.3 151 65.6
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 3.3e-54 215.3 151 67.5
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 4.3e-54 214.9 151 67.5
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 4.3e-54 214.9 151 67.5
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 5.6e-54 214.5 151 65.6
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 7.3e-54 214.2 151 66.9
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 7.3e-54 214.2 138 68.8
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 7.3e-54 214.2 150 67.3
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 9.5e-54 213.8 151 65.6
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 1.2e-53 213.4 151 64.9
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 1.2e-53 213.4 151 65.6
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 1.6e-53 213.0 144 66.7
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 2.1e-53 212.6 150 65.3
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 2.8e-53 212.2 151 67.5
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 2.8e-53 212.2 151 67.5
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 3.6e-53 211.8 138 68.1
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 3.6e-53 211.8 151 67.5
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 6.2e-53 211.1 151 66.9
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 6.2e-53 211.1 150 67.3
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 8.1e-53 210.7 151 63.6
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 8.1e-53 210.7 151 66.2
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.1e-52 210.3 151 66.2
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 1.1e-52 210.3 151 64.9
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 1.4e-52 209.9 152 64.5
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 1.4e-52 209.9 151 66.2
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 1.8e-52 209.5 151 65.6
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 1.8e-52 209.5 151 65.6
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.8e-52 209.5 150 66.7
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 2.4e-52 209.1 151 64.2
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 3.1e-52 208.8 151 62.9
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 6.8e-52 207.6 148 66.9
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 8.9e-52 207.2 151 63.6
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 1.5e-51 206.5 155 62.6
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 3.4e-51 205.3 152 67.1
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 4.4e-51 204.9 151 64.9
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 5.8e-51 204.5 151 66.2
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 7.6e-51 204.1 151 62.3
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 1.7e-50 203.0 152 63.8
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 3.8e-50 201.8 151 66.2
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 3.8e-50 201.8 151 66.2
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 6.4e-50 201.1 151 65.6
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 6.4e-50 201.1 151 65.6
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 1.1e-49 200.3 151 65.6
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 1.1e-49 200.3 151 65.6
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 2.4e-49 199.1 151 66.2
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 2.4e-49 199.1 151 65.6
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 3.2e-49 198.7 151 65.6
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 4.2e-49 198.4 138 68.1
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 9.2e-49 197.2 151 65.6
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 9.2e-49 197.2 151 65.6
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 2.1e-48 196.1 151 66.9
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 2.7e-48 195.7 138 65.2
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 3.0e-47 192.2 151 63.6
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 1.7e-42 176.4 163 55.2
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 1.4e-41 173.3 152 54.6
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 4.2e-41 171.8 152 54.6
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 9.3e-41 170.6 151 57.0
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.0e-39 167.2 112 70.5
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 2.5e-38 162.5 108 66.7
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 3.3e-38 162.2 108 67.6
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 2.1e-37 159.5 151 54.3
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 8.1e-37 157.5 151 54.3
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 1.5e-35 153.3 140 52.1
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 1.9e-33 146.4 107 64.5
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 5.4e-33 144.8 87 75.9
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 2.1e-32 142.9 107 63.6
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 2.5e-30 136.0 100 64.0
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 3.3e-30 135.6 137 48.9
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.1e-28 130.6 90 71.1
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 2.9e-26 122.5 101 59.4
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.8e-26 122.1 90 65.6
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 4.2e-25 118.6 98 60.2
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.5e-24 115.5 76 71.1
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 1.4e-20 103.6 96 54.2
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 1.5e-19 100.1 70 61.4
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 3.4e-19 99.0 137 45.3
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 4.5e-19 98.6 96 52.1
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 2.1e-16 89.7 94 43.6
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 5.1e-15 85.1 64 64.1
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 7.4e-14 81.3 51 74.5
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 1.2e-11 73.9 67 56.7
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 3.4e-11 72.4 43 69.8
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 6.5e-10 68.2 42 69.0
Cre16.g674200 Chlamydomonas reinhardtii HOM05D020894 ORTHO05D021334 2.5e-06 56.2 140 27.9


User provided reference genes

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