Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO143G0007 Selaginella moellendorffii HOM05D006666 ORTHO05D008276 1.4e-41 172.6 87 100.0
AagrBONN_evm.TU.Sc2ySwM_344.686 Anthoceros agrestis HOM05D006666 ORTHO05D008276 9.5e-19 96.7 78 62.8
Mapoly0096s0047 Marchantia polymorpha HOM05D006666 ORTHO05D008276 2.8e-18 95.1 85 58.8
Sed0024015 Sechium edule HOM05D006666 ORTHO05D008276 2.8e-18 95.1 77 59.7
Glyma.10G174200 Glycine max HOM05D006666 ORTHO05D008276 4.7e-18 94.4 87 57.5
Pp3c19_21970 Physcomitrium patens HOM05D006666 ORTHO05D008276 8.1e-18 93.6 85 56.5
ClCG04G012450 Citrullus lanatus HOM05D006666 ORTHO05D008276 1.8e-17 92.4 77 58.4
ATR0124G047 Amborella trichopoda HOM05D006666 ORTHO05D008276 2.4e-17 92.0 90 48.9
Nn4g25066 Nelumbo nucifera HOM05D006666 ORTHO05D008276 2.4e-17 92.0 77 58.4
VMungo0720G1342 Vigna mungo HOM05D006666 ORTHO05D008276 2.4e-17 92.0 77 58.4
MELO3C001965.2 Cucumis melo HOM05D006666 ORTHO05D008276 3.1e-17 91.7 77 58.4
DCAR_011403 Daucus carota HOM05D006666 ORTHO05D008276 4.0e-17 91.3 86 54.7
Nitab4.5_0008182g0010 Nicotiana tabacum HOM05D006666 ORTHO05D008276 4.0e-17 91.3 77 55.8
Lalb_Chr21g0311701 Lupinus albus HOM05D006666 ORTHO05D008276 6.8e-17 90.5 81 58.0
Glyma.20G216200 Glycine max HOM05D006666 ORTHO05D008276 1.2e-16 89.7 77 58.4
Medtr1g077550 Medicago truncatula HOM05D006666 ORTHO05D008276 1.2e-16 89.7 77 54.5
Atru.chr9.23 Acer truncatum HOM05D006666 ORTHO05D008276 2.0e-16 89.0 77 53.2
Lj5g0025802 Lotus japonicus HOM05D006666 ORTHO05D008276 2.0e-16 89.0 77 58.4
Peaxi162Scf00171g00030 Petunia axillaris HOM05D006666 ORTHO05D008276 2.0e-16 89.0 77 54.5
SEGI_19522 Sequoiadendron giganteum HOM05D006666 ORTHO05D008276 2.0e-16 89.0 81 54.3
PGSC0003DMG400015210 Solanum tuberosum HOM05D006666 ORTHO05D008276 2.0e-16 89.0 77 54.5
TPR.G8870 Trifolium pratense HOM05D006666 ORTHO05D008276 2.0e-16 89.0 78 60.3
AUR62006207 Chenopodium quinoa HOM05D006666 ORTHO05D008276 2.6e-16 88.6 87 49.4
MBI06_g22566_MAGBIO Magnolia biondii HOM05D006666 ORTHO05D008276 2.6e-16 88.6 81 53.1
Phvul.L006501 Phaseolus vulgaris HOM05D006666 ORTHO05D008276 2.6e-16 88.6 77 58.4
Rhsim08G0006200 Rhododendron simsii HOM05D006666 ORTHO05D008276 2.6e-16 88.6 79 50.6
Sc10g0008660 Simmondsia chinensis HOM05D006666 ORTHO05D008276 3.4e-16 88.2 87 52.9
CSS0032824 Camellia sinensis var. sinensis HOM05D006666 ORTHO05D008276 4.4e-16 87.8 88 50.0
Nitab4.5_0009307g0050 Nicotiana tabacum HOM05D006666 ORTHO05D008276 4.4e-16 87.8 77 53.2
TAR629G2781 Trochodendron aralioides HOM05D006666 ORTHO05D008276 4.4e-16 87.8 77 53.2
Ca_09926_v3 Cicer arietinum L. HOM05D006666 ORTHO05D008276 5.8e-16 87.4 80 53.8
AUR62037011 Chenopodium quinoa HOM05D006666 ORTHO05D008276 7.6e-16 87.0 87 49.4
PGR083G1370 Punica granatum HOM05D006666 ORTHO05D008276 7.6e-16 87.0 78 56.4
TWI81G0077 Tripterygium wilfordii HOM05D006666 ORTHO05D008276 7.6e-16 87.0 78 53.8
MSTRG.11567 Avicennia marina HOM05D006666 ORTHO05D008276 9.9e-16 86.7 80 53.8
HPP92_021068 Vanilla planifolia HOM05D006666 ORTHO05D008276 1.3e-15 86.3 84 54.8
Cc00_g07700 Coffea canephora HOM05D006666 ORTHO05D008276 1.7e-15 85.9 80 55.0
Gohir.A07G062700 Gossypium hirsutum HOM05D006666 ORTHO05D008276 1.7e-15 85.9 85 49.4
Gorai.001G070900 Gossypium raimondii HOM05D006666 ORTHO05D008276 1.7e-15 85.9 85 49.4
Solyc03g019880.3 Solanum lycopersicum HOM05D006666 ORTHO05D008276 1.7e-15 85.9 77 53.2
Sopen03g029740 Solanum pennellii HOM05D006666 ORTHO05D008276 1.7e-15 85.9 77 51.9
AT1G28150 Arabidopsis thaliana HOM05D006666 ORTHO05D008276 2.2e-15 85.5 88 47.7
Ciclev10023646m.g Citrus clementina HOM05D006666 ORTHO05D008276 2.2e-15 85.5 77 51.9
vmacro17828 Vaccinium macrocarpon HOM05D006666 ORTHO05D008276 2.2e-15 85.5 77 49.4
EL10Ac7g16891 Beta vulgaris HOM05D006666 ORTHO05D008276 2.9e-15 85.1 87 49.4
PSO063G5885 Papaver somniferum HOM05D006666 ORTHO05D008276 2.9e-15 85.1 77 50.6
PSO782G1773 Papaver somniferum HOM05D006666 ORTHO05D008276 2.9e-15 85.1 77 50.6
CAN.G861.22 Capsicum annuum HOM05D006666 ORTHO05D008276 3.8e-15 84.7 79 51.9
CiPaw.16G075700 Carya illinoinensis HOM05D006666 ORTHO05D008276 3.8e-15 84.7 77 53.2
Psat6g054440 Pisum sativum HOM05D006666 ORTHO05D008276 3.8e-15 84.7 84 50.0
Prupe.5G245400 Prunus persica HOM05D006666 ORTHO05D008276 3.8e-15 84.7 77 50.6
Lsat_1_v5_gn_8_1660 Lactuca sativa HOM05D006666 ORTHO05D008276 4.9e-15 84.3 80 52.5
MD14G1247300 Malus domestica HOM05D006666 ORTHO05D008276 4.9e-15 84.3 77 49.4
Eucgr.H00663 Eucalyptus grandis HOM05D006666 ORTHO05D008276 6.4e-15 84.0 78 50.0
FvH4_5g18600 Fragaria vesca HOM05D006666 ORTHO05D008276 6.4e-15 84.0 79 50.6
FAN18G1406 Fragaria x ananassa HOM05D006666 ORTHO05D008276 6.4e-15 84.0 79 50.6
Hund06740 Selenicereus undatus HOM05D006666 ORTHO05D008276 6.4e-15 84.0 87 48.3
SGA_v2.0_scaffold25G10726 Striga asiatica HOM05D006666 ORTHO05D008276 6.4e-15 84.0 79 51.9
Manes.02G219900 Manihot esculenta HOM05D006666 ORTHO05D008276 8.4e-15 83.6 89 50.6
SalBow5G0154 Salvia bowleyana HOM05D006666 ORTHO05D008276 1.4e-14 82.8 85 47.1
AL1G41680 Arabidopsis lyrata HOM05D006666 ORTHO05D008276 1.9e-14 82.4 85 48.2
Gohir.D07G067300 Gossypium hirsutum HOM05D006666 ORTHO05D008276 1.9e-14 82.4 85 48.2
Ah.15g090740 Amaranthus hybridus HOM05D006666 ORTHO05D008276 2.4e-14 82.0 78 48.7
CARHR027620 Cardamine hirsuta HOM05D006666 ORTHO05D008276 2.4e-14 82.0 86 47.7
Haze_18405 Corylus avellana HOM05D006666 ORTHO05D008276 2.4e-14 82.0 77 49.4
CDE04G3444 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 3.2e-14 81.6 81 49.4
FAN08G1977 Fragaria x ananassa HOM05D006666 ORTHO05D008276 3.2e-14 81.6 79 48.1
Actinidia02653 Actinidia chinensis HOM05D006666 ORTHO05D008276 4.2e-14 81.3 80 51.2
Cfa017808 Carpinus fangiana HOM05D006666 ORTHO05D008276 4.2e-14 81.3 77 49.4
Duzib205G1681 Durio zibethinus HOM05D006666 ORTHO05D008276 4.2e-14 81.3 77 48.1
Migut.O00284 Erythranthe guttata HOM05D006666 ORTHO05D008276 4.2e-14 81.3 82 51.2
FAN04G1657 Fragaria x ananassa HOM05D006666 ORTHO05D008276 4.2e-14 81.3 79 48.1
FAN13G2387 Fragaria x ananassa HOM05D006666 ORTHO05D008276 4.2e-14 81.3 79 48.1
BcaC05g26820 Brassica carinata HOM05D006666 ORTHO05D008276 7.1e-14 80.5 89 48.3
C05p26900 Brassica napus HOM05D006666 ORTHO05D008276 7.1e-14 80.5 89 48.3
BolC5t31408H Brassica oleracea HOM05D006666 ORTHO05D008276 7.1e-14 80.5 89 48.3
CsaV3_1G005250 Cucumis sativus L. HOM05D006666 ORTHO05D008276 7.1e-14 80.5 56 62.5
Hma1.2p1_0816F.1_g222970 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 7.1e-14 80.5 76 50.0
Os04g0528100 Oryza sativa ssp. japonica HOM05D006666 ORTHO05D008276 7.1e-14 80.5 89 49.4
Potri.004G066900 Populus trichocarpa HOM05D006666 ORTHO05D008276 9.2e-14 80.1 79 46.8
SalBow1G4610 Salvia bowleyana HOM05D006666 ORTHO05D008276 9.2e-14 80.1 78 47.4
Thecc.03G072200 Theobroma cacao HOM05D006666 ORTHO05D008276 9.2e-14 80.1 85 48.2
BraA09t39302Z Brassica rapa HOM05D006666 ORTHO05D008276 1.6e-13 79.3 88 48.9
A09p37900 Brassica napus HOM05D006666 ORTHO05D008276 2.1e-13 79.0 88 48.9
Dinv09758 Davidia involucrata HOM05D006666 ORTHO05D008276 2.1e-13 79.0 84 45.2
RcHm_v2.0_Chr7g0176901 Rosa chinensis HOM05D006666 ORTHO05D008276 2.1e-13 79.0 79 48.1
unitig_749.g13724 Utricularia gibba HOM05D006666 ORTHO05D008276 2.1e-13 79.0 77 53.2
Aqoxy3G04334 Aquilegia oxysepala HOM05D006666 ORTHO05D008276 4.6e-13 77.8 78 52.6
Carub.0001s2658 Capsella rubella HOM05D006666 ORTHO05D008276 4.6e-13 77.8 86 45.3
Sp1g24340 Schrenkiella parvula HOM05D006666 ORTHO05D008276 4.6e-13 77.8 86 45.3
C07p17240 Brassica napus HOM05D006666 ORTHO05D008276 6.0e-13 77.4 86 45.3
BraA07t28933Z Brassica rapa HOM05D006666 ORTHO05D008276 6.0e-13 77.4 86 45.3
CDE06G1954 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 6.0e-13 77.4 80 48.8
Thhalv10009115m.g Eutrema salsugineum HOM05D006666 ORTHO05D008276 6.0e-13 77.4 87 47.1
THA.LOC104812606 Tarenaya hassleriana HOM05D006666 ORTHO05D008276 6.0e-13 77.4 86 45.3
GSVIVG01024243001 Vitis vinifera HOM05D006666 ORTHO05D008276 6.0e-13 77.4 78 50.0
BcaB03g13950 Brassica carinata HOM05D006666 ORTHO05D008276 7.8e-13 77.0 86 44.2
BcaC06g35338 Brassica carinata HOM05D006666 ORTHO05D008276 1.3e-12 76.3 86 44.2
BolC7t42228H Brassica oleracea HOM05D006666 ORTHO05D008276 1.3e-12 76.3 86 44.2
Aa31sc45G80 Aethionema arabicum HOM05D006666 ORTHO05D008276 1.7e-12 75.9 74 48.6
arahy.Tifrunner.gnm1.ann1.UGS5Z8 Arachis hypogaea HOM05D006666 ORTHO05D008276 1.7e-12 75.9 100 44.0
HanXRQChr05g0141151 Helianthus annuus HOM05D006666 ORTHO05D008276 1.7e-12 75.9 75 48.0
MD06G1241100 Malus domestica HOM05D006666 ORTHO05D008276 5.1e-12 74.3 89 43.8
A07p11450 Brassica napus HOM05D006666 ORTHO05D008276 6.6e-12 73.9 86 44.2
ECA233G5286 Erigeron canadensis HOM05D006666 ORTHO05D008276 6.6e-12 73.9 72 50.0
PRCOL_00004364 Prasinoderma coloniale HOM05D006666 ORTHO05D008276 1.8e-09 65.9 46 58.7
MCO08G267 Micromonas commoda HOM05D006666 ORTHO05D008276 2.4e-09 65.5 68 44.1
COL.COLO4_25502 Corchorus olitorius HOM05D006666 ORTHO05D008276 3.1e-09 65.1 60 50.0
Oeu038394.2 Olea europaea HOM05D006666 ORTHO05D008276 2.6e-08 62.0 62 46.8
QL10p036089 Quercus lobata HOM05D006666 ORTHO05D008276 2.6e-08 62.0 60 48.3
QL10p036477 Quercus lobata HOM05D006666 ORTHO05D008276 2.6e-08 62.0 61 45.9
Cre03.g203800 Chlamydomonas reinhardtii HOM05D006666 ORTHO05D008276 5.8e-08 60.8 59 47.5
Sabra04G0044800 Salix brachista HOM05D006666 ORTHO05D008276 1.3e-07 59.7 63 44.4
Sabra11G0106200 Salix brachista HOM05D006666 ORTHO05D008276 1.3e-07 59.7 63 44.4
Sabra17G0092500 Salix brachista HOM05D006666 ORTHO05D008276 1.3e-07 59.7 63 44.4


User provided reference genes

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