Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 2.0e-152 542.3 270 100.0
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 5.8e-99 364.8 272 66.5
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 5.5e-97 358.2 273 66.3
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 1.2e-91 340.5 250 67.6
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 1.2e-91 340.5 250 67.6
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 1.5e-91 340.1 249 67.1
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 2.6e-91 339.3 250 67.6
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 1.3e-90 337.0 250 66.8
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 1.7e-90 336.7 250 66.8
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 2.9e-90 335.9 250 67.2
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 3.8e-90 335.5 250 66.0
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 3.8e-90 335.5 250 66.8
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 5.0e-90 335.1 250 67.6
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 5.0e-90 335.1 250 67.6
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 5.0e-90 335.1 250 66.0
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 5.0e-90 335.1 253 67.2
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 6.5e-90 334.7 250 67.6
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 6.5e-90 334.7 250 66.8
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 8.4e-90 334.3 250 67.2
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 8.4e-90 334.3 250 66.4
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 8.4e-90 334.3 249 65.9
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 8.4e-90 334.3 249 66.3
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 8.4e-90 334.3 249 67.1
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 1.1e-89 334.0 251 66.1
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 1.1e-89 334.0 250 66.8
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 1.1e-89 334.0 250 67.2
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 1.4e-89 333.6 272 61.8
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 1.4e-89 333.6 250 66.4
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 3.2e-89 332.4 250 66.8
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 4.2e-89 332.0 250 66.4
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 4.2e-89 332.0 250 66.4
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 7.1e-89 331.3 250 63.6
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 7.1e-89 331.3 250 66.0
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 9.3e-89 330.9 250 65.6
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 1.2e-88 330.5 250 66.0
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 1.2e-88 330.5 250 65.6
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 1.2e-88 330.5 250 65.6
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 1.2e-88 330.5 250 65.6
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 1.2e-88 330.5 250 65.6
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 1.2e-88 330.5 250 65.6
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 1.2e-88 330.5 249 65.1
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.6e-88 330.1 250 64.4
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 1.6e-88 330.1 246 66.3
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 2.1e-88 329.7 250 65.6
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 2.7e-88 329.3 250 64.0
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 3.5e-88 328.9 250 65.2
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 3.5e-88 328.9 249 64.7
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 4.6e-88 328.6 250 65.6
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 6.1e-88 328.2 250 66.4
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 6.1e-88 328.2 250 66.4
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 6.1e-88 328.2 250 66.0
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 1.0e-87 327.4 250 64.0
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.0e-87 327.4 250 64.0
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.0e-87 327.4 250 64.0
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 1.3e-87 327.0 250 66.0
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 1.3e-87 327.0 250 66.0
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 1.8e-87 326.6 250 64.8
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 1.8e-87 326.6 250 65.6
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 2.3e-87 326.2 250 64.0
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 3.0e-87 325.9 249 64.3
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 3.0e-87 325.9 250 65.6
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 3.9e-87 325.5 250 65.2
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 3.9e-87 325.5 250 65.2
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 5.1e-87 325.1 250 64.4
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 5.1e-87 325.1 249 63.9
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 6.7e-87 324.7 249 64.3
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 6.7e-87 324.7 259 64.5
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 8.7e-87 324.3 250 64.8
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 8.7e-87 324.3 251 63.7
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 8.7e-87 324.3 250 64.0
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 1.1e-86 323.9 251 62.9
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 1.5e-86 323.6 248 63.3
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 1.5e-86 323.6 249 64.3
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 1.9e-86 323.2 249 63.9
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 3.3e-86 322.4 249 64.7
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 3.3e-86 322.4 249 63.5
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 4.3e-86 322.0 249 63.9
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 9.7e-86 320.9 248 64.5
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 1.3e-85 320.5 250 63.6
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 2.2e-85 319.7 249 64.3
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 3.7e-85 318.9 250 64.0
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 6.3e-85 318.2 249 62.7
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 6.3e-85 318.2 249 62.2
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 8.2e-85 317.8 250 63.2
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 8.2e-85 317.8 250 63.2
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 8.2e-85 317.8 249 63.9
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.1e-84 317.4 265 60.4
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 1.1e-84 317.4 240 63.3
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 1.4e-84 317.0 231 67.5
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.4e-84 317.0 250 64.4
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.4e-84 317.0 250 64.4
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 1.4e-84 317.0 250 64.4
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 6.9e-84 314.7 249 63.5
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 9.0e-84 314.3 265 60.0
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 1.2e-83 313.9 249 63.5
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 1.3e-82 310.5 250 63.2
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 3.8e-82 308.9 231 67.1
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 6.5e-82 308.1 256 62.5
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 2.5e-81 306.2 295 55.9
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.1e-78 297.4 250 62.0
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 4.5e-75 285.4 273 57.9
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 2.9e-74 282.7 204 66.7
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 3.6e-72 275.8 244 59.4
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 1.8e-71 273.5 204 65.2
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 3.9e-71 272.3 213 64.8
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 1.1e-68 264.2 199 66.3
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 4.5e-67 258.8 250 53.2
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 1.0e-66 257.7 201 64.2
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 3.0e-63 246.1 242 50.8
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 4.0e-63 245.7 249 53.4
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 2.4e-60 236.5 287 47.0
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 9.8e-54 214.5 166 63.9
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 2.2e-53 213.4 268 43.7
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 1.4e-52 210.7 159 64.8
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 4.7e-48 195.7 133 69.9
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 2.2e-45 186.8 146 63.7
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 2.1e-40 170.2 146 57.5
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 5.2e-39 165.6 112 70.5
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 2.2e-37 160.2 134 61.9
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 3.5e-35 152.9 112 65.2
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 5.9e-35 152.1 105 66.7
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 1.3e-34 151.0 105 68.6
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 1.1e-33 147.9 131 58.8
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 4.3e-33 146.0 105 65.7
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 5.6e-33 145.6 105 66.7
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 8.0e-32 141.7 199 44.2
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 8.3e-29 131.7 115 59.1
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 1.1e-28 131.3 87 64.4
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 2.1e-24 117.1 245 33.9
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 1.8e-23 114.0 97 60.8
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 9.2e-20 101.7 107 51.4
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 3.6e-16 89.7 95 52.6
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 8.1e-16 88.6 83 53.0
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 1.1e-15 88.2 67 64.2
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 6.0e-11 72.4 44 75.0
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 2.3e-10 70.5 55 61.8


User provided reference genes

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