Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO141G0171 Selaginella moellendorffii HOM05D003540 ORTHO05D004012 9.4e-50 199.9 102 100.0
CSS0040126 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 2.4e-29 132.1 101 61.4
Aqoxy6G00672 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 2.0e-28 129.0 101 58.4
Rhsim06G0075200 Rhododendron simsii HOM05D003540 ORTHO05D004012 3.5e-28 128.3 101 58.4
Aqoxy1G03155 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 5.9e-28 127.5 101 59.4
TAR625G0842 Trochodendron aralioides HOM05D003540 ORTHO05D004012 1.0e-27 126.7 101 57.4
Zm00001eb325480 Zea mays HOM05D003540 ORTHO05D004012 1.7e-27 125.9 101 60.4
CAN.G460.5 Capsicum annuum HOM05D003540 ORTHO05D004012 2.9e-27 125.2 101 58.4
Eucgr.F00400 Eucalyptus grandis HOM05D003540 ORTHO05D004012 2.9e-27 125.2 101 59.4
PGSC0003DMG401002119 Solanum tuberosum HOM05D003540 ORTHO05D004012 2.9e-27 125.2 101 59.4
GSVIVG01003618001 Vitis vinifera HOM05D003540 ORTHO05D004012 3.8e-27 124.8 101 58.4
Os07g0577900 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 8.6e-27 123.6 101 59.4
Zm00001eb107620 Zea mays HOM05D003540 ORTHO05D004012 1.1e-26 123.2 101 60.4
Solyc02g063075.1 Solanum lycopersicum HOM05D003540 ORTHO05D004012 1.9e-26 122.5 101 57.4
Solyc04g074940.4 Solanum lycopersicum HOM05D003540 ORTHO05D004012 1.9e-26 122.5 101 57.4
Sopen02g014150 Solanum pennellii HOM05D003540 ORTHO05D004012 1.9e-26 122.5 101 57.4
Sopen04g029890 Solanum pennellii HOM05D003540 ORTHO05D004012 1.9e-26 122.5 101 57.4
PGSC0003DMG400024178 Solanum tuberosum HOM05D003540 ORTHO05D004012 1.9e-26 122.5 101 57.4
Sc23g0000530 Simmondsia chinensis HOM05D003540 ORTHO05D004012 4.2e-26 121.3 101 56.4
CSS0040517 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 5.5e-26 120.9 101 57.4
CSS0047709 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 5.5e-26 120.9 101 57.4
Dinv44828 Davidia involucrata HOM05D003540 ORTHO05D004012 7.2e-26 120.6 101 55.4
Peaxi162Scf00725g00536 Petunia axillaris HOM05D003540 ORTHO05D004012 7.2e-26 120.6 101 58.4
vmacro04682 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 7.2e-26 120.6 106 56.6
CAN.G1538.2 Capsicum annuum HOM05D003540 ORTHO05D004012 9.5e-26 120.2 101 55.4
Duzib116G0544 Durio zibethinus HOM05D003540 ORTHO05D004012 9.5e-26 120.2 101 54.5
Oeu013165.1 Olea europaea HOM05D003540 ORTHO05D004012 9.5e-26 120.2 101 57.4
Peaxi162Scf00139g00825 Petunia axillaris HOM05D003540 ORTHO05D004012 9.5e-26 120.2 98 58.2
CANSAT25G0001 Cannabis sativa HOM05D003540 ORTHO05D004012 1.2e-25 119.8 101 56.4
Hma1.2p1_0961F.1_g241695 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 1.2e-25 119.8 100 56.0
Hma1.2p1_0961F.1_g241710 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 1.2e-25 119.8 100 56.0
CSS0021893 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 2.1e-25 119.0 101 55.4
ECA234G0792 Erigeron canadensis HOM05D003540 ORTHO05D004012 2.1e-25 119.0 101 55.4
ECA247G1419 Erigeron canadensis HOM05D003540 ORTHO05D004012 2.1e-25 119.0 101 55.4
COL.COLO4_11964 Corchorus olitorius HOM05D003540 ORTHO05D004012 2.8e-25 118.6 101 54.5
MBI02_g18294_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 4.7e-25 117.9 101 54.5
Nn1g05484 Nelumbo nucifera HOM05D003540 ORTHO05D004012 4.7e-25 117.9 99 54.5
Prupe.1G526600 Prunus persica HOM05D003540 ORTHO05D004012 4.7e-25 117.9 102 54.9
CDE05G3432 Ceratophyllum demersum HOM05D003540 ORTHO05D004012 6.1e-25 117.5 101 53.5
Gohir.A06G032664 Gossypium hirsutum HOM05D003540 ORTHO05D004012 6.1e-25 117.5 101 53.5
Gohir.D06G033200 Gossypium hirsutum HOM05D003540 ORTHO05D004012 6.1e-25 117.5 101 53.5
Gorai.010G036600 Gossypium raimondii HOM05D003540 ORTHO05D004012 6.1e-25 117.5 101 53.5
Lj1g0000615 Lotus japonicus HOM05D003540 ORTHO05D004012 1.0e-24 116.7 101 58.4
Sc01g0000960 Simmondsia chinensis HOM05D003540 ORTHO05D004012 1.0e-24 116.7 101 54.5
CiPaw.01G047900 Carya illinoinensis HOM05D003540 ORTHO05D004012 1.4e-24 116.3 101 54.5
MBI06_g18789_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 1.4e-24 116.3 101 54.5
Oeu024713.1 Olea europaea HOM05D003540 ORTHO05D004012 1.4e-24 116.3 101 55.4
Sed0022834 Sechium edule HOM05D003540 ORTHO05D004012 1.4e-24 116.3 101 53.5
TWI74G0452 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 1.4e-24 116.3 98 54.1
Lsat_1_v5_gn_6_105381 Lactuca sativa HOM05D003540 ORTHO05D004012 1.8e-24 115.9 99 56.6
Thecc.08G066000 Theobroma cacao HOM05D003540 ORTHO05D004012 1.8e-24 115.9 101 52.5
AagrBONN_evm.TU.Sc2ySwM_228.2385 Anthoceros agrestis HOM05D003540 ORTHO05D004012 3.0e-24 115.2 100 58.0
EL10Ac3g06094 Beta vulgaris HOM05D003540 ORTHO05D004012 4.0e-24 114.8 101 54.5
Cpa.g.sc36.201 Carica papaya HOM05D003540 ORTHO05D004012 4.0e-24 114.8 98 54.1
Duzib093G0958 Durio zibethinus HOM05D003540 ORTHO05D004012 4.0e-24 114.8 100 53.0
Lalb_Chr10g0102641 Lupinus albus HOM05D003540 ORTHO05D004012 4.0e-24 114.8 101 56.4
Nitab4.5_0001984g0080 Nicotiana tabacum HOM05D003540 ORTHO05D004012 5.2e-24 114.4 95 55.8
Potri.005G159600 Populus trichocarpa HOM05D003540 ORTHO05D004012 5.2e-24 114.4 101 52.5
Rhsim07G0209200 Rhododendron simsii HOM05D003540 ORTHO05D004012 5.2e-24 114.4 101 54.5
Migut.D01990 Erythranthe guttata HOM05D003540 ORTHO05D004012 8.9e-24 113.6 101 54.5
HanXRQChr08g0226211 Helianthus annuus HOM05D003540 ORTHO05D004012 8.9e-24 113.6 101 54.5
CiPaw.07G169400 Carya illinoinensis HOM05D003540 ORTHO05D004012 1.5e-23 112.8 101 51.5
Cc10_g15500 Coffea canephora HOM05D003540 ORTHO05D004012 1.5e-23 112.8 101 51.5
RcHm_v2.0_Chr7g0237701 Rosa chinensis HOM05D003540 ORTHO05D004012 1.5e-23 112.8 102 54.9
HanXRQChr02g0046851 Helianthus annuus HOM05D003540 ORTHO05D004012 2.6e-23 112.1 101 53.5
Os03g0187700 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 2.6e-23 112.1 99 53.5
Duzib041G0585 Durio zibethinus HOM05D003540 ORTHO05D004012 3.4e-23 111.7 100 52.0
Sabra05G0121300 Salix brachista HOM05D003540 ORTHO05D004012 3.4e-23 111.7 101 51.5
Medtr5g065550 Medicago truncatula HOM05D003540 ORTHO05D004012 4.4e-23 111.3 101 55.4
MD15G1380400 Malus domestica HOM05D003540 ORTHO05D004012 5.7e-23 110.9 102 53.9
PSO675G6040 Papaver somniferum HOM05D003540 ORTHO05D004012 5.7e-23 110.9 101 52.5
GSVIVG01009122001 Vitis vinifera HOM05D003540 ORTHO05D004012 5.7e-23 110.9 101 50.5
Ah.05g170560 Amaranthus hybridus HOM05D003540 ORTHO05D004012 7.5e-23 110.5 101 52.5
Glyma.02G211500 Glycine max HOM05D003540 ORTHO05D004012 7.5e-23 110.5 101 54.5
QL09p016915 Quercus lobata HOM05D003540 ORTHO05D004012 7.5e-23 110.5 101 50.5
Thecc.01G093400 Theobroma cacao HOM05D003540 ORTHO05D004012 7.5e-23 110.5 98 52.0
Ciclev10002815m.g Citrus clementina HOM05D003540 ORTHO05D004012 9.8e-23 110.2 101 50.5
MELO3C003542.2 Cucumis melo HOM05D003540 ORTHO05D004012 9.8e-23 110.2 101 50.5
vmacro21941 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 9.8e-23 110.2 97 51.5
Glyma.14G179100 Glycine max HOM05D003540 ORTHO05D004012 1.3e-22 109.8 101 54.5
Phvul.008G178700 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 1.3e-22 109.8 101 54.5
BcaB03g13908 Brassica carinata HOM05D003540 ORTHO05D004012 1.7e-22 109.4 98 50.0
A07p10970 Brassica napus HOM05D003540 ORTHO05D004012 1.7e-22 109.4 98 50.0
BraA07t28888Z Brassica rapa HOM05D003540 ORTHO05D004012 1.7e-22 109.4 98 50.0
Manes.02G147700 Manihot esculenta HOM05D003540 ORTHO05D004012 1.7e-22 109.4 101 50.5
Psat2g066800 Pisum sativum HOM05D003540 ORTHO05D004012 1.7e-22 109.4 101 55.4
Lalb_Chr23g0270201 Lupinus albus HOM05D003540 ORTHO05D004012 2.2e-22 109.0 99 53.5
Lalb_Chr23g0270301 Lupinus albus HOM05D003540 ORTHO05D004012 2.2e-22 109.0 99 53.5
Sp1g25000 Schrenkiella parvula HOM05D003540 ORTHO05D004012 2.2e-22 109.0 98 49.0
Sed0006262 Sechium edule HOM05D003540 ORTHO05D004012 2.2e-22 109.0 100 52.0
VMungo0647G0300 Vigna mungo HOM05D003540 ORTHO05D004012 2.2e-22 109.0 101 53.5
MSTRG.11484 Avicennia marina HOM05D003540 ORTHO05D004012 2.8e-22 108.6 101 55.4
C03p75500 Brassica napus HOM05D003540 ORTHO05D004012 2.8e-22 108.6 98 49.0
BolC3t19806H Brassica oleracea HOM05D003540 ORTHO05D004012 2.8e-22 108.6 98 49.0
Medtr3g099773 Medicago truncatula HOM05D003540 ORTHO05D004012 2.8e-22 108.6 101 54.5
TPR.G6376 Trifolium pratense HOM05D003540 ORTHO05D004012 2.8e-22 108.6 101 53.5
BcaB07g32485 Brassica carinata HOM05D003540 ORTHO05D004012 3.7e-22 108.2 98 49.0
BcaC06g35396 Brassica carinata HOM05D003540 ORTHO05D004012 3.7e-22 108.2 98 49.0
BcaNung06434 Brassica carinata HOM05D003540 ORTHO05D004012 3.7e-22 108.2 98 49.0
BraA08t34486Z Brassica rapa HOM05D003540 ORTHO05D004012 4.9e-22 107.8 98 49.0
HPP92_023309 Vanilla planifolia HOM05D003540 ORTHO05D004012 4.9e-22 107.8 99 51.5
BcaNung06754 Brassica carinata HOM05D003540 ORTHO05D004012 6.3e-22 107.5 98 48.0
Thhalv10009065m.g Eutrema salsugineum HOM05D003540 ORTHO05D004012 6.3e-22 107.5 98 48.0
CARHR028280 Cardamine hirsuta HOM05D003540 ORTHO05D004012 1.1e-21 106.7 98 49.0
COL.COLO4_27316 Corchorus olitorius HOM05D003540 ORTHO05D004012 1.1e-21 106.7 99 51.5
Migut.O00140 Erythranthe guttata HOM05D003540 ORTHO05D004012 1.1e-21 106.7 101 55.4
Gohir.A11G205600 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.1e-21 106.7 98 50.0
Mapoly0006s0109 Marchantia polymorpha HOM05D003540 ORTHO05D004012 1.1e-21 106.7 102 52.9
Gohir.D11G218000 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.4e-21 106.3 98 50.0
THA.LOC104812634 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 1.4e-21 106.3 98 48.0
Gorai.007G236000 Gossypium raimondii HOM05D003540 ORTHO05D004012 1.8e-21 105.9 98 50.0
PGR031G1594 Punica granatum HOM05D003540 ORTHO05D004012 1.8e-21 105.9 101 50.5
THA.LOC104820588 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 2.4e-21 105.5 98 48.0
AL7G41530 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 3.1e-21 105.1 98 48.0
Carub.0001s2726 Capsella rubella HOM05D003540 ORTHO05D004012 3.1e-21 105.1 98 48.0
Lsat_1_v5_gn_1_2480 Lactuca sativa HOM05D003540 ORTHO05D004012 3.1e-21 105.1 89 56.2
AT4G14600 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 4.1e-21 104.8 98 48.0
Manes.18G062100 Manihot esculenta HOM05D003540 ORTHO05D004012 5.4e-21 104.4 101 48.5
Potri.002G102400 Populus trichocarpa HOM05D003540 ORTHO05D004012 7.0e-21 104.0 101 48.5
TWI12G0801 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 7.0e-21 104.0 98 50.0
SGA_v2.0_scaffold37G14731 Striga asiatica HOM05D003540 ORTHO05D004012 9.2e-21 103.6 100 54.0
AL1G42780 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 2.0e-20 102.4 98 48.0
AT1G29060 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 2.0e-20 102.4 98 48.0
SGA_v2.0_scaffold5G02749 Striga asiatica HOM05D003540 ORTHO05D004012 2.0e-20 102.4 102 52.9
Lj1g0025059 Lotus japonicus HOM05D003540 ORTHO05D004012 2.7e-20 102.1 101 50.5
SEGI_39968 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 2.7e-20 102.1 80 58.8
Aa31LG5G21170 Aethionema arabicum HOM05D003540 ORTHO05D004012 4.5e-20 101.3 98 45.9
BcaC05g26921 Brassica carinata HOM05D003540 ORTHO05D004012 4.5e-20 101.3 98 46.9
C05p27740 Brassica napus HOM05D003540 ORTHO05D004012 4.5e-20 101.3 98 46.9
DCAR_001735 Daucus carota HOM05D003540 ORTHO05D004012 4.5e-20 101.3 101 48.5
Psat5g050000 Pisum sativum HOM05D003540 ORTHO05D004012 7.8e-20 100.5 101 49.5
FAN13G2229 Fragaria x ananassa HOM05D003540 ORTHO05D004012 1.3e-19 99.8 99 52.5
Phvul.009G034800 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 2.3e-19 99.0 101 49.5
Hund16878 Selenicereus undatus HOM05D003540 ORTHO05D004012 5.0e-19 97.8 120 42.5
FvH4_5g35960 Fragaria vesca HOM05D003540 ORTHO05D004012 1.1e-18 96.7 99 51.5
FAN08G1899 Fragaria x ananassa HOM05D003540 ORTHO05D004012 1.1e-18 96.7 99 51.5
Actinidia29606 Actinidia chinensis HOM05D003540 ORTHO05D004012 1.9e-18 95.9 95 52.6
Glyma.06G098800 Glycine max HOM05D003540 ORTHO05D004012 2.5e-18 95.5 101 47.5
TAR381G0359 Trochodendron aralioides HOM05D003540 ORTHO05D004012 3.3e-18 95.1 82 52.4
SalBow6G0357 Salvia bowleyana HOM05D003540 ORTHO05D004012 4.3e-18 94.7 101 49.5
FAN18G2789 Fragaria x ananassa HOM05D003540 ORTHO05D004012 5.6e-18 94.4 99 50.5
SalBow7G2649 Salvia bowleyana HOM05D003540 ORTHO05D004012 9.5e-18 93.6 101 48.5
Haze_15046 Corylus avellana HOM05D003540 ORTHO05D004012 2.8e-17 92.0 159 35.8
Pp3c7_10130 Physcomitrium patens HOM05D003540 ORTHO05D004012 1.0e-16 90.1 101 49.5
MSTRG.9688 Avicennia marina HOM05D003540 ORTHO05D004012 4.0e-16 88.2 82 51.2
ClCG11G014400 Citrullus lanatus HOM05D003540 ORTHO05D004012 6.8e-16 87.4 103 44.7
TWI56G0839 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 1.2e-15 86.7 89 46.1
Cfa013710 Carpinus fangiana HOM05D003540 ORTHO05D004012 4.4e-15 84.7 101 43.6
Haze_22354 Corylus avellana HOM05D003540 ORTHO05D004012 5.8e-15 84.3 101 42.6
arahy.Tifrunner.gnm1.ann1.41SNZJ Arachis hypogaea HOM05D003540 ORTHO05D004012 8.3e-14 80.5 90 47.8
arahy.Tifrunner.gnm1.ann1.NU78SD Arachis hypogaea HOM05D003540 ORTHO05D004012 8.3e-14 80.5 90 47.8
AagrBONN_evm.TU.Sc2ySwM_228.2961 Anthoceros agrestis HOM05D003540 ORTHO05D004012 1.1e-13 80.1 68 60.3
SalBow6G2258 Salvia bowleyana HOM05D003540 ORTHO05D004012 2.4e-13 79.0 79 49.4
SalBow6G4055 Salvia bowleyana HOM05D003540 ORTHO05D004012 2.4e-13 79.0 79 49.4
Cc04_g11820 Coffea canephora HOM05D003540 ORTHO05D004012 3.2e-13 78.6 99 44.4
CDE05G3211 Ceratophyllum demersum HOM05D000364 ORTHO05D004012 4.1e-13 78.2 77 46.8
arahy.Tifrunner.gnm1.ann1.QI1MS0 Arachis hypogaea HOM05D003540 ORTHO05D004012 6.0e-12 74.3 89 43.8
MD08G1191600 Malus domestica HOM05D003540 ORTHO05D004012 7.8e-12 73.9 102 41.2
arahy.Tifrunner.gnm1.ann1.Q67T8J Arachis hypogaea HOM05D003540 ORTHO05D004012 1.3e-11 73.2 89 42.7
AUR62002400 Chenopodium quinoa HOM05D003540 ORTHO05D004012 1.5e-10 69.7 79 44.3
SEGI_15699 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 5.6e-10 67.8 49 59.2
Gohir.A05G356050 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.2e-09 66.6 50 56.0
MCO11G826 Micromonas commoda HOM05D003540 ORTHO05D004012 2.8e-09 65.5 99 39.4
PRCOL_00003995 Prasinoderma coloniale HOM05D003540 ORTHO05D004012 4.7e-09 64.7 97 34.0
ATR0736G080 Amborella trichopoda HOM05D003540 ORTHO05D004012 8.0e-09 63.9 49 55.1
Nitab4.5_0000008g0680 Nicotiana tabacum HOM05D003540 ORTHO05D004012 8.0e-09 63.9 50 56.0
Actinidia33112 Actinidia chinensis HOM05D003540 ORTHO05D004012 1.1e-08 63.5 71 46.5
Nitab4.5_0013778g0010 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.1e-08 63.5 49 57.1
Dinv42647 Davidia involucrata HOM05D003540 ORTHO05D004012 1.4e-08 63.2 49 57.1
QL06p047634 Quercus lobata HOM05D003540 ORTHO05D004012 3.1e-08 62.0 49 61.2
Nn1g08254 Nelumbo nucifera HOM05D003540 ORTHO05D004012 1.5e-07 59.7 48 56.2
A08p25340 Brassica napus HOM05D003540 ORTHO05D004012 3.4e-07 58.5 49 55.1
BolC7t42159H Brassica oleracea HOM05D003540 ORTHO05D004012 3.4e-07 58.5 49 55.1
Cre09.g405600 Chlamydomonas reinhardtii HOM05D003540 ORTHO05D004012 3.4e-07 58.5 98 34.7
CDE04G1284 Ceratophyllum demersum HOM05D003540 ORTHO05D004012 1.7e-06 56.2 67 43.3
Aa31LG6G11550 Aethionema arabicum HOM05D003540 ORTHO05D004012 3.7e-06 55.1 49 53.1
FAN04G3145 Fragaria x ananassa HOM05D003540 ORTHO05D004012 8.3e-06 53.9 55 52.7


User provided reference genes

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