Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 1.1e-251 872.8 452 100.0
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 1.4e-153 547.0 464 59.7
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 2.9e-151 539.3 463 59.4
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 7.4e-147 524.6 466 59.0
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 5.0e-127 458.8 464 51.5
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 3.9e-124 449.1 466 49.8
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 2.8e-122 443.0 465 48.6
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 5.3e-121 438.7 466 47.2
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 9.1e-121 438.0 466 47.4
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 7.7e-120 434.9 469 46.3
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 7.7e-120 434.9 467 45.2
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 5.0e-119 432.2 467 45.2
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 1.4e-118 430.6 467 45.6
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 9.4e-118 427.9 467 45.4
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 1.2e-117 427.6 467 46.9
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 3.6e-117 426.0 470 46.2
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 2.3e-116 423.3 467 45.0
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 6.7e-116 421.8 470 44.9
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 1.5e-115 420.6 470 45.7
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 3.3e-115 419.5 470 46.2
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 1.7e-114 417.2 465 45.4
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 2.8e-114 416.4 470 44.9
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 1.1e-113 414.5 469 46.3
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 1.1e-113 414.5 469 45.0
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 1.8e-113 413.7 467 45.2
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 2.4e-113 413.3 470 46.0
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 4.1e-113 412.5 470 45.5
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 5.3e-113 412.1 472 44.5
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 9.1e-113 411.4 469 43.7
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 1.6e-112 410.6 470 44.5
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 2.0e-112 410.2 467 45.2
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 2.6e-112 409.8 470 45.1
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 7.7e-112 408.3 467 44.3
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.0e-111 407.9 470 44.9
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.0e-111 407.9 470 44.9
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 1.0e-111 407.9 481 46.4
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 1.0e-111 407.9 470 44.3
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 1.0e-111 407.9 470 43.4
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.3e-111 407.5 467 44.8
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 1.7e-111 407.1 470 46.2
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 5.0e-111 405.6 470 45.1
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 1.9e-110 403.7 469 43.3
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 2.7e-109 399.8 455 47.0
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 3.6e-109 399.4 466 42.9
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 3.6e-109 399.4 469 42.2
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 4.7e-109 399.1 469 43.3
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 4.7e-109 399.1 467 43.3
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 6.1e-109 398.7 466 43.1
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 1.0e-108 397.9 470 44.7
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 1.4e-108 397.5 467 43.9
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 2.0e-107 393.7 452 43.4
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 3.3e-107 392.9 470 43.0
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 7.5e-107 391.7 470 44.0
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 9.7e-107 391.3 466 42.9
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 1.7e-106 390.6 470 43.0
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 4.8e-106 389.0 469 42.6
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 6.3e-106 388.7 470 42.3
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 3.1e-105 386.3 472 42.2
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 5.9e-104 382.1 470 43.4
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 1.0e-103 381.3 471 42.7
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 2.2e-103 380.2 470 41.1
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 1.9e-102 377.1 470 41.7
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 7.2e-102 375.2 470 41.7
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 1.6e-101 374.0 469 40.1
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 6.1e-101 372.1 470 41.5
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 1.0e-100 371.3 460 39.3
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 5.2e-100 369.0 470 41.1
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 2.6e-99 366.7 296 56.1
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 1.3e-98 364.4 470 40.9
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 1.7e-98 364.0 397 45.8
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 8.3e-98 361.7 468 42.7
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 4.1e-97 359.4 467 39.6
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 7.0e-97 358.6 461 42.1
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 9.1e-97 358.2 476 39.1
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 1.6e-96 357.5 468 39.7
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 2.0e-96 357.1 363 48.5
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 3.5e-96 356.3 476 39.3
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 2.3e-95 353.6 456 41.0
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.9e-94 350.5 471 40.6
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 1.6e-93 347.4 469 39.7
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 1.6e-93 347.4 461 40.8
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 4.7e-93 345.9 471 39.1
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 4.0e-92 342.8 469 39.7
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 2.0e-91 340.5 297 52.5
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 2.8e-90 336.7 454 38.3
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 3.7e-90 336.3 461 39.3
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 8.3e-90 335.1 468 38.0
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 1.4e-89 334.3 461 39.0
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 3.1e-89 333.2 469 38.0
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 3.1e-89 333.2 266 56.0
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 2.7e-88 330.1 347 48.4
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 7.8e-88 328.6 461 38.2
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 7.8e-88 328.6 471 38.6
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 1.7e-87 327.4 461 38.0
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 8.6e-87 325.1 468 37.0
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 4.3e-86 322.8 293 48.5
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 8.0e-85 318.5 470 38.5
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 8.9e-84 315.1 480 36.9
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.1e-81 308.1 453 37.5
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 5.4e-81 305.8 452 38.1
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 3.7e-74 283.1 469 35.0
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 3.7e-74 283.1 469 35.0
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 4.9e-74 282.7 365 40.3
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 5.1e-71 272.7 366 38.0
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 5.1e-71 272.7 446 34.3
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 3.1e-68 263.5 209 56.0
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 4.4e-67 259.6 375 39.7
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 9.2e-65 251.9 326 39.6
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 1.4e-60 238.0 363 35.8
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 2.7e-56 223.8 184 54.3
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 6.0e-56 222.6 252 42.9
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 5.6e-54 216.1 167 53.9
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 3.2e-41 173.7 255 38.8
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 1.3e-39 168.3 353 32.0
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 1.7e-34 151.4 117 52.1
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 3.1e-28 130.6 117 49.6
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 4.1e-20 103.6 180 34.4
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 7.7e-19 99.4 61 67.2
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 1.0e-15 89.0 221 28.5
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 1.8e-15 88.2 189 31.7
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 3.9e-15 87.0 209 32.1
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 2.6e-11 74.3 165 32.1
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 3.8e-10 70.5 74 43.2
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 1.1e-09 68.9 79 43.0
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 2.1e-08 64.7 136 30.1
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 3.9e-07 60.5 40 60.0


User provided reference genes

Program Settings