Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 0.0e+00 1088.9 556 100.0
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 1.9e-189 666.4 565 60.7
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 2.9e-185 652.5 561 60.1
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 4.9e-185 651.7 559 59.7
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 6.4e-185 651.4 555 60.7
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.1e-184 650.6 557 59.6
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.2e-184 649.0 557 59.4
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 9.3e-184 647.5 559 59.6
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 4.6e-183 645.2 557 59.4
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.3e-182 643.7 561 59.2
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 1.8e-182 643.3 559 59.4
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 3.9e-182 642.1 559 59.0
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 3.9e-182 642.1 561 58.3
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 1.1e-181 640.6 556 59.4
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 1.9e-181 639.8 554 58.3
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 4.3e-181 638.6 560 58.8
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 5.6e-181 638.3 559 59.0
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 7.4e-181 637.9 556 58.3
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 7.4e-181 637.9 569 58.7
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 1.6e-180 636.7 564 58.9
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 1.6e-180 636.7 554 59.6
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 3.6e-180 635.6 564 58.7
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.8e-180 635.2 559 58.7
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 4.8e-180 635.2 560 58.2
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 6.2e-180 634.8 560 59.3
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 8.1e-180 634.4 560 60.2
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 8.1e-180 634.4 560 58.2
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.1e-179 634.0 559 58.9
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.8e-179 633.3 553 58.0
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 2.4e-179 632.9 553 58.6
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 2.4e-179 632.9 559 58.9
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 5.3e-179 631.7 553 57.7
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 6.9e-179 631.3 560 58.9
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 6.9e-179 631.3 561 57.9
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 9.0e-179 630.9 559 58.7
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.5e-178 630.2 560 57.0
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 2.0e-178 629.8 557 56.7
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 2.6e-178 629.4 557 57.8
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 3.4e-178 629.0 558 58.2
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.5e-178 628.6 553 58.0
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 4.5e-178 628.6 557 56.9
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 7.6e-178 627.9 555 57.8
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 9.9e-178 627.5 558 58.4
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.3e-177 627.1 563 58.1
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.7e-177 626.7 557 57.6
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 3.8e-177 625.5 560 58.2
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 3.8e-177 625.5 556 59.2
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 3.8e-177 625.5 555 57.7
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.9e-177 625.2 555 57.5
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 8.4e-177 624.4 564 58.0
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 1.1e-176 624.0 555 58.7
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 1.4e-176 623.6 550 58.7
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 1.9e-176 623.2 558 58.4
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 2.4e-176 622.9 560 58.6
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 2.4e-176 622.9 564 55.5
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.2e-176 622.5 553 56.8
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 3.2e-176 622.5 554 58.5
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 7.1e-176 621.3 561 57.6
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 9.3e-176 620.9 554 57.0
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 1.2e-175 620.5 560 58.4
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 1.2e-175 620.5 551 58.8
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 1.2e-175 620.5 554 58.5
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.2e-175 620.5 565 57.3
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 1.6e-175 620.2 551 58.8
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.5e-175 619.0 578 56.6
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 3.5e-175 619.0 554 56.3
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 3.5e-175 619.0 553 58.4
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 3.5e-175 619.0 613 53.7
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 4.6e-175 618.6 562 58.7
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 6.0e-175 618.2 562 56.8
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 7.9e-175 617.8 558 57.9
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.0e-174 617.5 560 57.3
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 1.8e-174 616.7 558 58.1
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 2.3e-174 616.3 558 56.6
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 2.3e-174 616.3 554 56.3
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 2.3e-174 616.3 560 57.5
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 3.9e-174 615.5 560 57.3
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 6.7e-174 614.8 550 58.4
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 6.7e-174 614.8 550 58.4
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 8.7e-174 614.4 558 57.7
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 1.1e-173 614.0 547 58.5
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 1.9e-173 613.2 550 58.2
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.9e-173 613.2 549 58.5
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.9e-173 613.2 583 55.6
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.9e-173 613.2 554 55.8
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 2.5e-173 612.8 554 56.5
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 4.3e-173 612.1 557 56.6
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 5.6e-173 611.7 555 56.9
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 2.1e-172 609.8 624 52.9
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 4.8e-172 608.6 536 58.2
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 4.8e-172 608.6 574 54.5
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 6.2e-172 608.2 558 58.1
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 6.2e-172 608.2 557 58.0
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 8.1e-172 607.8 552 55.6
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.1e-171 607.4 554 55.8
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 1.8e-171 606.7 537 57.5
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 1.8e-171 606.7 554 56.0
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 1.2e-170 604.0 558 57.9
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 2.0e-170 603.2 554 55.6
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.0e-170 603.2 534 58.8
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 4.5e-170 602.1 559 55.6
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 5.8e-170 601.7 556 58.1
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 7.6e-170 601.3 607 54.0
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 1.3e-169 600.5 554 55.4
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 9.3e-168 594.3 537 56.1
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 9.3e-168 594.3 555 56.8
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 1.2e-167 594.0 549 55.6
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 6.0e-167 591.7 539 56.4
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 6.0e-167 591.7 594 53.0
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.5e-165 587.0 591 53.8
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 4.3e-165 585.5 553 54.8
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 3.7e-164 582.4 552 56.0
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 4.5e-162 575.5 562 55.0
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 5.9e-162 575.1 551 54.1
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 2.9e-161 572.8 557 54.0
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 5.0e-161 572.0 511 56.4
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 4.2e-160 568.9 633 50.1
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.3e-158 563.9 579 52.3
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 2.5e-152 543.1 496 55.2
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 2.1e-151 540.0 477 58.3
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 4.4e-149 532.3 553 52.1
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 2.2e-148 530.0 454 60.8
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.2e-145 520.0 473 55.8
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.0e-142 511.1 556 50.0
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 3.0e-142 509.6 487 55.6
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 5.7e-141 505.4 556 49.5
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 8.2e-140 501.5 532 49.4
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 5.7e-133 478.8 413 60.3
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 2.2e-129 466.8 390 60.8
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 8.5e-129 464.9 395 60.3
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 9.4e-128 461.5 395 60.0
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 2.1e-119 433.7 366 61.5
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 8.8e-118 428.3 355 60.6
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 4.4e-101 372.9 317 58.4
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 9.2e-91 338.6 275 62.5
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 6.4e-84 315.8 228 69.7
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 6.4e-84 315.8 277 58.5
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 7.9e-66 255.8 193 61.7
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.0e-52 212.2 203 54.7
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 6.9e-46 189.5 228 47.4
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.0e-36 159.1 136 58.8
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 4.7e-34 150.2 155 49.7
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 7.4e-32 142.9 114 59.6
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 2.8e-31 141.0 152 48.0
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 7.4e-24 116.3 192 37.5
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 6.1e-18 96.7 81 54.3
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 2.3e-17 94.7 79 58.2
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 5.2e-17 93.6 107 51.4
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 4.4e-16 90.5 81 51.9
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 4.1e-14 84.0 74 52.7
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 2.0e-13 81.6 119 40.3
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 9.4e-11 72.8 76 47.4
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 2.3e-09 68.2 114 40.4


User provided reference genes

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