Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 7.7e-68 260.4 134 100.0
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 1.5e-31 139.8 134 55.2
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 2.2e-30 136.0 143 51.7
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 3.7e-30 135.2 146 47.9
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 3.7e-30 135.2 141 51.8
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 2.4e-29 132.5 146 47.3
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 5.4e-29 131.3 145 49.0
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 7.0e-29 131.0 146 46.6
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 9.2e-29 130.6 146 45.2
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 9.2e-29 130.6 136 49.3
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 1.2e-28 130.2 145 48.3
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 1.2e-28 130.2 141 47.5
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.6e-28 129.8 145 46.9
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 2.0e-28 129.4 146 45.9
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 2.7e-28 129.0 146 45.9
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 2.7e-28 129.0 144 46.5
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 3.5e-28 128.6 146 45.9
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 4.6e-28 128.3 140 47.1
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 4.6e-28 128.3 143 46.9
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 6.0e-28 127.9 146 46.6
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 6.0e-28 127.9 146 46.6
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 6.0e-28 127.9 146 47.9
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 6.0e-28 127.9 146 45.2
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 7.8e-28 127.5 142 48.6
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 7.8e-28 127.5 146 47.9
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 7.8e-28 127.5 137 47.4
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 7.8e-28 127.5 146 45.2
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 1.0e-27 127.1 142 45.1
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 1.0e-27 127.1 142 45.8
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 1.3e-27 126.7 146 45.9
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 1.7e-27 126.3 146 47.3
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 2.3e-27 125.9 142 44.4
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 2.3e-27 125.9 142 44.4
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 2.3e-27 125.9 142 44.4
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.3e-27 125.9 146 47.3
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 3.0e-27 125.6 146 46.6
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 3.0e-27 125.6 144 45.8
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 3.0e-27 125.6 139 47.5
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 3.9e-27 125.2 146 43.8
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 5.0e-27 124.8 142 44.4
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 5.0e-27 124.8 139 47.5
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 5.0e-27 124.8 139 46.8
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 5.0e-27 124.8 145 46.2
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 6.6e-27 124.4 142 43.0
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 6.6e-27 124.4 146 45.9
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 6.6e-27 124.4 146 45.2
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 8.6e-27 124.0 147 43.5
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 1.1e-26 123.6 139 47.5
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 1.1e-26 123.6 146 44.5
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 1.1e-26 123.6 139 45.3
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 1.1e-26 123.6 144 45.8
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 1.5e-26 123.2 136 44.9
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 1.5e-26 123.2 146 46.6
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 1.5e-26 123.2 146 45.2
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 1.5e-26 123.2 142 44.4
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 1.9e-26 122.9 142 44.4
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 1.9e-26 122.9 148 45.3
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 2.5e-26 122.5 143 44.8
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.5e-26 122.5 148 42.6
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.5e-26 122.5 148 42.6
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 3.3e-26 122.1 143 46.2
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 3.3e-26 122.1 146 43.2
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 3.3e-26 122.1 146 43.8
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 3.3e-26 122.1 146 43.8
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 3.3e-26 122.1 146 43.8
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 3.3e-26 122.1 146 43.8
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 3.3e-26 122.1 146 43.8
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 4.3e-26 121.7 147 44.9
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 5.6e-26 121.3 146 43.2
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 7.3e-26 120.9 146 43.8
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 7.3e-26 120.9 148 43.9
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 7.3e-26 120.9 142 43.7
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 7.3e-26 120.9 137 44.5
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 9.5e-26 120.6 139 45.3
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 9.5e-26 120.6 138 46.4
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 1.2e-25 120.2 146 43.2
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 1.2e-25 120.2 143 46.9
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 2.1e-25 119.4 136 47.1
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 2.8e-25 119.0 137 43.8
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 2.8e-25 119.0 142 43.7
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 2.8e-25 119.0 142 43.7
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 2.8e-25 119.0 142 43.7
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 2.8e-25 119.0 141 44.7
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 2.8e-25 119.0 146 43.2
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 2.8e-25 119.0 146 43.2
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 2.8e-25 119.0 145 42.8
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 2.8e-25 119.0 145 46.2
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 3.6e-25 118.6 142 43.7
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 3.6e-25 118.6 136 42.6
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 3.6e-25 118.6 143 44.8
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 4.7e-25 118.2 143 42.7
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 4.7e-25 118.2 143 42.0
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 4.7e-25 118.2 143 46.9
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 2.3e-24 115.9 143 43.4
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 2.3e-24 115.9 139 43.2
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.3e-24 115.9 136 44.9
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 3.1e-24 115.5 136 43.4
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 4.0e-24 115.2 134 45.5
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.2e-24 114.8 147 41.5
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 5.2e-24 114.8 146 41.1
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 6.8e-24 114.4 134 44.0
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.9e-24 114.0 147 40.8
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.9e-24 114.0 147 42.2
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 1.5e-23 113.2 168 41.1
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 1.5e-23 113.2 145 40.7
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.0e-23 112.8 129 44.2
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 2.0e-23 112.8 130 46.2
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 3.4e-23 112.1 142 42.3
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 3.4e-23 112.1 183 36.6
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 5.8e-23 111.3 172 37.8
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 4.9e-22 108.2 124 44.4
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 6.4e-22 107.8 146 39.0
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.9e-21 106.3 125 44.8
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.2e-20 103.6 146 38.4
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 4.7e-17 91.7 137 38.7
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.1e-16 90.5 97 52.6
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.3e-16 89.4 120 44.2
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 8.9e-16 87.4 104 47.1
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.2e-15 87.0 99 47.5
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 7.6e-15 84.3 95 44.2
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 7.6e-15 84.3 115 38.3
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 2.2e-14 82.8 90 43.3
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 2.2e-14 82.8 90 43.3
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 2.2e-14 82.8 90 43.3
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 3.7e-14 82.0 99 43.4
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 8.4e-14 80.9 118 39.8
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.1e-13 80.5 147 36.7
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 1.9e-13 79.7 71 49.3
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 4.1e-13 78.6 94 43.6
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 9.2e-13 77.4 98 44.9
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.6e-12 76.6 105 42.9
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 2.7e-12 75.9 67 49.3
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 6.0e-12 74.7 98 43.9
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.3e-11 72.8 119 38.7
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.5e-10 69.3 132 37.9
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 5.6e-10 68.2 88 42.0
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 7.3e-10 67.8 97 40.2
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.8e-09 65.9 86 39.5
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 5.2e-08 61.6 96 40.6
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.9e-06 55.8 141 31.2
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 3.8e-06 55.5 71 39.4


User provided reference genes

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