Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 2.8e-94 348.6 176 100.0
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.1e-32 144.1 155 51.0
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 1.8e-32 143.3 108 63.9
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 1.8e-32 143.3 119 61.3
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 2.4e-32 142.9 100 67.0
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 2.4e-32 142.9 102 64.7
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 3.1e-32 142.5 112 58.9
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 3.1e-32 142.5 100 67.0
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 4.0e-32 142.1 99 68.7
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 4.0e-32 142.1 99 68.7
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 4.0e-32 142.1 100 66.0
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 5.2e-32 141.7 112 62.5
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 5.2e-32 141.7 100 66.0
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 5.2e-32 141.7 107 62.6
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 6.8e-32 141.4 141 52.5
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 8.9e-32 141.0 99 66.7
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 1.5e-31 140.2 98 67.3
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 1.5e-31 140.2 148 50.7
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.5e-31 140.2 99 66.7
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 2.0e-31 139.8 151 50.3
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 2.6e-31 139.4 103 64.1
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.6e-31 139.4 103 64.1
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.6e-31 139.4 103 64.1
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.6e-31 139.4 103 63.1
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 2.6e-31 139.4 100 69.0
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 2.6e-31 139.4 100 69.0
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 2.6e-31 139.4 103 64.1
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 2.6e-31 139.4 99 66.7
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 3.4e-31 139.0 99 66.7
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 3.4e-31 139.0 99 66.7
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 3.4e-31 139.0 99 66.7
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 3.4e-31 139.0 99 66.7
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 3.4e-31 139.0 137 54.0
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 3.4e-31 139.0 99 66.7
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 5.8e-31 138.3 98 67.3
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 5.8e-31 138.3 99 65.7
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.8e-31 138.3 103 63.1
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 7.6e-31 137.9 98 65.3
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 7.6e-31 137.9 99 65.7
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 7.6e-31 137.9 98 67.3
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 7.6e-31 137.9 110 60.9
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 7.6e-31 137.9 103 64.1
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 7.6e-31 137.9 98 67.3
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 9.9e-31 137.5 148 50.7
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 1.3e-30 137.1 99 64.6
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 1.7e-30 136.7 98 66.3
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 1.7e-30 136.7 99 66.7
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 1.7e-30 136.7 99 66.7
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 1.7e-30 136.7 99 66.7
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 1.7e-30 136.7 99 66.7
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 1.7e-30 136.7 122 54.9
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 2.2e-30 136.3 99 64.6
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 2.2e-30 136.3 99 65.7
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 2.9e-30 136.0 99 66.7
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 2.9e-30 136.0 118 60.2
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 2.9e-30 136.0 99 65.7
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 2.9e-30 136.0 98 66.3
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 2.9e-30 136.0 99 62.6
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 3.8e-30 135.6 99 63.6
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.8e-30 135.6 105 60.0
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 3.8e-30 135.6 99 65.7
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 3.8e-30 135.6 98 68.4
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 3.8e-30 135.6 98 68.4
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 3.8e-30 135.6 98 66.3
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 3.8e-30 135.6 168 43.5
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 3.8e-30 135.6 137 52.6
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 3.8e-30 135.6 103 64.1
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 4.9e-30 135.2 99 65.7
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 4.9e-30 135.2 99 64.6
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 4.9e-30 135.2 98 65.3
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 6.4e-30 134.8 102 61.8
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 6.4e-30 134.8 99 63.6
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 6.4e-30 134.8 99 65.7
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 6.4e-30 134.8 99 65.7
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 6.4e-30 134.8 99 65.7
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 6.4e-30 134.8 103 62.1
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 6.4e-30 134.8 102 62.7
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 6.4e-30 134.8 103 62.1
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 6.4e-30 134.8 149 49.0
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 8.4e-30 134.4 156 51.3
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 8.4e-30 134.4 105 61.9
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 8.4e-30 134.4 98 65.3
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 8.4e-30 134.4 106 62.3
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 8.4e-30 134.4 98 67.3
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 1.1e-29 134.0 98 65.3
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 1.1e-29 134.0 98 64.3
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 1.1e-29 134.0 99 62.6
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 1.1e-29 134.0 107 58.9
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.4e-29 133.7 98 64.3
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.4e-29 133.7 99 64.6
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 1.4e-29 133.7 105 59.0
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 1.4e-29 133.7 99 60.6
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.4e-29 133.7 99 63.6
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.4e-29 133.7 104 60.6
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 1.9e-29 133.3 102 60.8
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 1.9e-29 133.3 99 60.6
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.9e-29 133.3 99 60.6
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.9e-29 133.3 99 60.6
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.9e-29 133.3 99 62.6
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 1.9e-29 133.3 99 63.6
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 1.9e-29 133.3 99 61.6
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 2.4e-29 132.9 99 62.6
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 2.4e-29 132.9 99 64.6
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 2.4e-29 132.9 98 65.3
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 3.2e-29 132.5 99 63.6
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 4.1e-29 132.1 98 64.3
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 4.1e-29 132.1 102 61.8
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 4.1e-29 132.1 99 63.6
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 4.1e-29 132.1 136 51.5
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 5.4e-29 131.7 99 62.6
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 5.4e-29 131.7 100 62.0
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 5.4e-29 131.7 97 63.9
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 9.2e-29 131.0 99 62.6
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 1.2e-28 130.6 106 60.4
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 1.2e-28 130.6 106 60.4
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 1.2e-28 130.6 106 56.6
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 1.2e-28 130.6 114 57.0
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 1.2e-28 130.6 106 60.4
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.6e-28 130.2 127 53.5
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 1.6e-28 130.2 106 61.3
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 2.1e-28 129.8 98 60.2
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 2.1e-28 129.8 114 55.3
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 2.1e-28 129.8 99 60.6
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 2.1e-28 129.8 99 60.6
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 2.7e-28 129.4 99 62.6
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 2.7e-28 129.4 98 63.3
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 3.5e-28 129.0 97 63.9
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 3.5e-28 129.0 128 55.5
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 4.6e-28 128.6 125 52.0
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 4.6e-28 128.6 108 54.6
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 4.6e-28 128.6 108 54.6
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 1.0e-27 127.5 118 54.2
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.0e-27 127.5 140 48.6
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 1.3e-27 127.1 98 60.2
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 1.7e-27 126.7 103 58.3
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 1.7e-27 126.7 99 61.6
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 3.0e-27 125.9 99 60.6
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 3.9e-27 125.6 98 62.2
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 8.7e-27 124.4 106 57.5
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 2.1e-25 119.8 105 56.2
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 4.7e-25 118.6 99 53.5
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 2.4e-21 106.3 85 61.2
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 2.3e-19 99.8 70 64.3
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 9.6e-18 94.4 73 68.5
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.1e-16 90.9 87 51.7
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 9.0e-16 87.8 87 50.6
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 3.4e-15 85.9 104 40.4
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 5.8e-15 85.1 99 48.5
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 5.8e-15 85.1 99 48.5
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.2e-13 79.0 70 55.7
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 4.2e-13 79.0 98 38.8
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 7.1e-13 78.2 111 37.8
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 6.7e-11 71.6 62 58.1
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 7.4e-10 68.2 45 64.4
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 1.3e-09 67.4 56 62.5
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 1.3e-09 67.4 56 62.5


User provided reference genes

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