Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 3.3e-34 147.9 79 100.0
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 4.7e-25 117.5 78 76.9
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.1e-24 116.3 77 75.3
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 1.4e-24 115.9 74 78.4
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 1.4e-24 115.9 74 78.4
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 1.4e-24 115.9 77 75.3
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.4e-24 115.9 77 74.0
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 1.4e-24 115.9 78 75.6
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 1.8e-24 115.5 79 74.7
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 2.4e-24 115.2 78 74.4
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 2.4e-24 115.2 77 75.3
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 2.4e-24 115.2 77 74.0
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 2.4e-24 115.2 77 75.3
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 3.1e-24 114.8 77 76.6
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 3.1e-24 114.8 77 76.6
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 4.0e-24 114.4 77 72.7
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 4.0e-24 114.4 78 74.4
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 5.2e-24 114.0 77 75.3
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 5.2e-24 114.0 77 74.0
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 5.2e-24 114.0 77 74.0
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 1.2e-23 112.8 78 73.1
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.2e-23 112.8 78 73.1
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 1.5e-23 112.5 78 74.4
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 1.5e-23 112.5 77 72.7
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 1.5e-23 112.5 77 72.7
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 1.5e-23 112.5 79 72.2
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.5e-23 112.5 77 72.7
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 1.5e-23 112.5 75 76.0
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 2.0e-23 112.1 77 74.0
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 2.0e-23 112.1 77 72.7
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 2.0e-23 112.1 77 72.7
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 2.0e-23 112.1 77 74.0
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 2.0e-23 112.1 77 72.7
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 2.0e-23 112.1 77 72.7
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 2.6e-23 111.7 77 74.0
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 2.6e-23 111.7 77 74.0
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 2.6e-23 111.7 77 72.7
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 2.6e-23 111.7 77 72.7
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.6e-23 111.7 77 72.7
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.6e-23 111.7 77 72.7
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 2.6e-23 111.7 77 74.0
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 2.6e-23 111.7 77 74.0
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 2.6e-23 111.7 77 74.0
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 2.6e-23 111.7 74 75.7
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 2.6e-23 111.7 74 75.7
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 2.6e-23 111.7 77 71.4
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 2.6e-23 111.7 77 71.4
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 3.4e-23 111.3 78 71.8
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 3.4e-23 111.3 77 71.4
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 3.4e-23 111.3 77 72.7
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 3.4e-23 111.3 77 72.7
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 3.4e-23 111.3 78 74.4
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 3.4e-23 111.3 78 74.4
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 3.4e-23 111.3 77 72.7
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 3.4e-23 111.3 77 71.4
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 4.4e-23 110.9 78 73.1
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 4.4e-23 110.9 78 73.1
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 4.4e-23 110.9 78 73.1
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 5.8e-23 110.5 78 71.8
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 5.8e-23 110.5 77 72.7
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 5.8e-23 110.5 77 70.1
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 5.8e-23 110.5 77 70.1
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 5.8e-23 110.5 77 72.7
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 5.8e-23 110.5 77 71.4
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 7.6e-23 110.2 77 72.7
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 7.6e-23 110.2 77 71.4
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 7.6e-23 110.2 77 70.1
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 7.6e-23 110.2 77 70.1
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 7.6e-23 110.2 77 71.4
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 9.9e-23 109.8 75 73.3
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 9.9e-23 109.8 77 72.7
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 9.9e-23 109.8 77 71.4
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 9.9e-23 109.8 77 74.0
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 9.9e-23 109.8 77 74.0
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 9.9e-23 109.8 77 70.1
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.3e-22 109.4 77 70.1
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.3e-22 109.4 77 70.1
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 1.3e-22 109.4 77 71.4
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 1.3e-22 109.4 78 73.1
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 1.3e-22 109.4 74 77.0
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 1.3e-22 109.4 77 71.4
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.3e-22 109.4 78 67.9
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 1.3e-22 109.4 78 71.8
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 1.3e-22 109.4 78 70.5
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.7e-22 109.0 77 71.4
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.7e-22 109.0 77 71.4
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 1.7e-22 109.0 78 69.2
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 1.7e-22 109.0 74 75.7
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.7e-22 109.0 78 70.5
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 1.7e-22 109.0 78 71.8
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 1.7e-22 109.0 77 71.4
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 2.2e-22 108.6 77 68.8
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 2.2e-22 108.6 77 70.1
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 2.2e-22 108.6 77 71.4
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 2.2e-22 108.6 77 71.4
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 2.9e-22 108.2 77 70.1
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 2.9e-22 108.2 77 70.1
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 2.9e-22 108.2 77 70.1
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 2.9e-22 108.2 77 70.1
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 2.9e-22 108.2 77 70.1
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 2.9e-22 108.2 79 70.9
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 2.9e-22 108.2 74 75.7
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.9e-22 108.2 77 70.1
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 3.8e-22 107.8 77 68.8
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 4.9e-22 107.5 77 68.8
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 4.9e-22 107.5 77 68.8
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 6.4e-22 107.1 77 68.8
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.4e-22 107.1 78 73.1
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 8.4e-22 106.7 77 68.8
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 8.4e-22 106.7 77 68.8
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 8.4e-22 106.7 74 74.3
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 1.1e-21 106.3 77 68.8
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 1.9e-21 105.5 77 68.8
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.9e-21 105.5 77 70.1
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.9e-21 105.5 77 70.1
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 3.2e-21 104.8 76 71.1
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 3.2e-21 104.8 78 69.2
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 4.2e-21 104.4 78 70.5
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 4.2e-21 104.4 78 70.5
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.6e-20 102.4 77 67.5
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 3.5e-20 101.3 77 64.9
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 4.6e-20 100.9 77 66.2
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.9e-18 95.5 108 51.9
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 4.3e-18 94.4 76 67.1
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 7.3e-18 93.6 66 71.2
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 7.3e-18 93.6 63 74.6
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 1.6e-17 92.4 62 74.2
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.1e-16 89.7 62 72.6
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 1.4e-16 89.4 77 62.3
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 1.5e-15 85.9 60 71.7
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.4e-15 84.7 78 57.7
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.4e-15 84.7 78 55.1
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 4.9e-14 80.9 70 61.4
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 4.2e-13 77.8 77 53.2
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.2e-12 76.3 77 50.6
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 3.0e-11 71.6 77 50.6
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 3.0e-11 71.6 48 77.1
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 9.6e-10 66.6 43 72.1
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.8e-09 65.1 48 68.8
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 6.2e-09 63.9 44 65.9
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 1.1e-08 63.2 43 67.4
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.1e-08 63.2 45 64.4
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 1.4e-08 62.8 76 47.4
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 2.4e-08 62.0 44 63.6
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 2.4e-08 62.0 41 75.6
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 4.0e-08 61.2 48 68.8
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 6.9e-08 60.5 44 63.6
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 9.0e-08 60.1 48 64.6
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 1.5e-07 59.3 42 71.4
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 2.0e-07 58.9 47 63.8
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.6e-07 58.5 44 59.1
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.6e-07 58.5 56 51.8
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 1.7e-06 55.8 43 60.5


User provided reference genes

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