Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 3.3e-77 292.0 183 100.0
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 1.2e-31 140.6 190 57.9
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 8.1e-28 127.9 84 69.0
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 2.4e-24 116.3 79 64.6
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 7.1e-24 114.8 181 48.1
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 1.6e-23 113.6 134 52.2
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 4.6e-23 112.1 180 49.4
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 7.9e-23 111.3 180 43.3
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 1.3e-22 110.5 137 46.0
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 2.3e-22 109.8 175 42.9
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 2.3e-22 109.8 138 52.9
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 3.9e-22 109.0 196 39.8
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 3.9e-22 109.0 93 57.0
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 5.1e-22 108.6 139 46.0
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 5.1e-22 108.6 133 54.9
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 5.1e-22 108.6 199 39.2
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 5.1e-22 108.6 137 59.1
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 6.7e-22 108.2 178 48.3
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 6.7e-22 108.2 182 53.8
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 6.7e-22 108.2 93 57.0
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 6.7e-22 108.2 173 45.7
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 8.7e-22 107.8 134 51.5
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 8.7e-22 107.8 177 41.8
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 8.7e-22 107.8 136 43.4
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 1.1e-21 107.5 95 56.8
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 1.1e-21 107.5 193 44.6
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 1.5e-21 107.1 94 56.4
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.5e-21 107.1 176 51.7
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.5e-21 107.1 176 54.5
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.5e-21 107.1 152 51.3
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.5e-21 107.1 188 48.9
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.9e-21 106.7 82 62.2
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 2.5e-21 106.3 133 52.6
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.5e-21 106.3 177 48.0
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 2.5e-21 106.3 152 52.6
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 2.5e-21 106.3 141 45.4
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 2.5e-21 106.3 133 60.9
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.5e-21 106.3 161 40.4
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 3.3e-21 105.9 133 53.4
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 3.3e-21 105.9 85 57.6
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 3.3e-21 105.9 137 58.4
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 3.3e-21 105.9 178 44.9
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 4.3e-21 105.5 153 56.9
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 4.3e-21 105.5 152 50.0
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 4.3e-21 105.5 176 54.0
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 4.3e-21 105.5 93 57.0
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 5.6e-21 105.1 173 48.0
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 5.6e-21 105.1 174 52.3
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 5.6e-21 105.1 138 58.0
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 5.6e-21 105.1 90 56.7
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 5.6e-21 105.1 162 41.4
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 5.6e-21 105.1 143 57.3
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 5.6e-21 105.1 138 51.4
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 7.4e-21 104.8 173 48.6
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 7.4e-21 104.8 82 59.8
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 7.4e-21 104.8 185 52.4
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 7.4e-21 104.8 153 49.7
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 7.4e-21 104.8 177 41.2
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 7.4e-21 104.8 177 41.2
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 9.6e-21 104.4 96 55.2
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 9.6e-21 104.4 85 57.6
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 9.6e-21 104.4 175 49.1
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 9.6e-21 104.4 138 59.4
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 9.6e-21 104.4 175 44.0
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 9.6e-21 104.4 180 38.9
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 9.6e-21 104.4 137 58.4
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 9.6e-21 104.4 156 46.8
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 1.3e-20 104.0 156 51.9
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.3e-20 104.0 153 56.9
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 1.3e-20 104.0 95 53.7
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 1.3e-20 104.0 189 45.5
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 1.3e-20 104.0 82 61.0
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 1.3e-20 104.0 188 38.8
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 1.3e-20 104.0 178 46.6
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 1.3e-20 104.0 175 49.7
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 1.6e-20 103.6 85 56.5
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.6e-20 103.6 181 43.6
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.6e-20 103.6 181 43.6
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 1.6e-20 103.6 175 49.7
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 1.6e-20 103.6 175 49.7
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 1.6e-20 103.6 95 53.7
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.6e-20 103.6 82 58.5
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 1.6e-20 103.6 160 47.5
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 2.8e-20 102.8 133 54.9
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 2.8e-20 102.8 82 61.0
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 2.8e-20 102.8 177 46.9
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 3.7e-20 102.4 175 49.7
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 3.7e-20 102.4 133 51.1
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 3.7e-20 102.4 82 61.0
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 4.8e-20 102.1 179 52.0
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 4.8e-20 102.1 188 47.9
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 4.8e-20 102.1 156 41.7
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 6.2e-20 101.7 90 54.4
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 6.2e-20 101.7 175 52.6
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 8.2e-20 101.3 136 61.0
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.1e-19 100.9 187 50.8
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.4e-19 100.5 177 52.0
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 1.4e-19 100.5 166 45.8
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.4e-19 100.5 91 49.5
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.4e-19 100.5 178 48.3
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.4e-19 100.5 181 45.3
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 1.8e-19 100.1 166 45.8
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.8e-19 100.1 130 60.0
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.8e-19 100.1 90 54.4
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.8e-19 100.1 176 49.4
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 2.4e-19 99.8 156 55.8
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 2.4e-19 99.8 82 48.8
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.4e-19 99.8 187 46.5
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 2.4e-19 99.8 187 49.2
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 3.1e-19 99.4 189 48.1
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 4.0e-19 99.0 176 45.5
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 4.0e-19 99.0 163 49.1
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 6.9e-19 98.2 169 45.6
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 6.9e-19 98.2 93 52.7
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 9.0e-19 97.8 187 48.1
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 9.0e-19 97.8 190 37.9
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 9.0e-19 97.8 182 47.8
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 9.0e-19 97.8 157 44.6
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 9.0e-19 97.8 82 57.3
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 1.2e-18 97.4 188 47.3
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 1.5e-18 97.1 185 42.7
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 1.5e-18 97.1 152 55.3
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 2.6e-18 96.3 179 48.0
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 4.5e-18 95.5 175 48.6
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 4.5e-18 95.5 76 57.9
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 2.2e-17 93.2 177 45.8
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 1.9e-16 90.1 167 52.1
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.9e-16 90.1 146 56.2
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 5.5e-16 88.6 167 44.3
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 1.6e-15 87.0 185 36.8
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 6.0e-15 85.1 70 55.7
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 1.0e-14 84.3 71 54.9
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 6.7e-14 81.6 169 47.9
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 1.9e-13 80.1 78 55.1
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 1.1e-11 74.3 73 56.2
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.7e-09 67.0 139 46.0
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 1.7e-09 67.0 67 46.3
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.2e-07 60.8 39 66.7


User provided reference genes

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