Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO139G0024 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 2.1e-278 961.8 513 100.0
SMO145G0057 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 6.3e-203 711.1 455 86.4
AagrBONN_evm.TU.Sc2ySwM_344.1287 Anthoceros agrestis HOM05D005607 ORTHO05D008142 1.4e-96 357.8 514 40.5
Pp3c1_12630 Physcomitrium patens HOM05D005607 ORTHO05D008142 2.5e-90 337.0 534 41.0
ATR0737G117 Amborella trichopoda HOM05D005607 ORTHO05D008142 4.1e-85 319.7 523 38.0
COL.COLO4_36717 Corchorus olitorius HOM05D005607 ORTHO05D008142 6.1e-81 305.8 530 38.5
CSS0008326 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 3.4e-79 300.1 527 37.6
MSTRG.12893 Avicennia marina HOM05D005607 ORTHO05D008142 9.8e-79 298.5 526 38.2
Cc05_g11730 Coffea canephora HOM05D005607 ORTHO05D008142 9.8e-79 298.5 526 37.8
TWI38G0301 Tripterygium wilfordii HOM05D005607 ORTHO05D008142 1.3e-78 298.1 527 37.6
CAN.G162.36 Capsicum annuum HOM05D005607 ORTHO05D008142 1.7e-78 297.7 523 37.5
Gohir.D05G347700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 1.7e-78 297.7 530 37.0
Gorai.009G375500 Gossypium raimondii HOM05D005607 ORTHO05D008142 4.8e-78 296.2 526 36.9
Gohir.A04G035700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 8.3e-78 295.4 526 37.1
Nitab4.5_0002330g0110 Nicotiana tabacum HOM05D005607 ORTHO05D008142 1.4e-77 294.7 523 36.7
Thecc.07G096400 Theobroma cacao HOM05D005607 ORTHO05D008142 1.8e-77 294.3 526 36.9
Nitab4.5_0008275g0010 Nicotiana tabacum HOM05D005607 ORTHO05D008142 3.1e-77 293.5 523 36.9
Sopen07g031060 Solanum pennellii HOM05D005607 ORTHO05D008142 4.1e-77 293.1 523 36.9
Eucgr.F01169 Eucalyptus grandis HOM05D005607 ORTHO05D008142 1.2e-76 291.6 524 36.3
PGR083G1887 Punica granatum HOM05D005607 ORTHO05D008142 2.0e-76 290.8 526 35.7
THA.LOC104815562 Tarenaya hassleriana HOM05D005607 ORTHO05D008142 2.0e-76 290.8 520 37.5
Prupe.4G175900 Prunus persica HOM05D005607 ORTHO05D008142 5.9e-76 289.3 521 35.7
RcHm_v2.0_Chr5g0032701 Rosa chinensis HOM05D005607 ORTHO05D008142 5.9e-76 289.3 520 36.3
Sc16g0007180 Simmondsia chinensis HOM05D005607 ORTHO05D008142 7.7e-76 288.9 514 36.2
PSO210G5410 Papaver somniferum HOM05D005607 ORTHO05D008142 1.7e-75 287.7 525 35.0
PSO832G0774 Papaver somniferum HOM05D005607 ORTHO05D008142 2.9e-75 287.0 522 35.1
GSVIVG01014288001 Vitis vinifera HOM05D005607 ORTHO05D008142 8.5e-75 285.4 523 36.3
FvH4_3g19420 Fragaria vesca HOM05D005607 ORTHO05D008142 6.1e-73 279.3 528 36.0
Dinv20204 Davidia involucrata HOM05D005607 ORTHO05D008142 8.0e-73 278.9 524 35.9
Sed0013999 Sechium edule HOM05D005607 ORTHO05D008142 1.4e-72 278.1 524 33.8
MELO3C025610.2 Cucumis melo HOM05D005607 ORTHO05D008142 3.0e-72 276.9 527 34.2
CsaV3_4G033450 Cucumis sativus L. HOM05D005607 ORTHO05D008142 3.0e-72 276.9 527 34.7
MD03G1232700 Malus domestica HOM05D005607 ORTHO05D008142 3.0e-72 276.9 521 34.0
vmacro11890 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 4.0e-72 276.6 551 34.8
Cfa020607 Carpinus fangiana HOM05D005607 ORTHO05D008142 5.2e-72 276.2 523 34.2
Ciclev10007885m.g Citrus clementina HOM05D005607 ORTHO05D008142 6.8e-72 275.8 526 35.6
vmacro23190 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 6.8e-72 275.8 551 34.8
VMungo1127G0827 Vigna mungo HOM05D005607 ORTHO05D008142 6.8e-72 275.8 529 35.3
Cpa.g.sc131.86 Carica papaya HOM05D005607 ORTHO05D008142 1.2e-71 275.0 526 34.6
CDE10G0361 Ceratophyllum demersum HOM05D005607 ORTHO05D008142 3.4e-71 273.5 528 34.7
Nn1g04204 Nelumbo nucifera HOM05D005607 ORTHO05D008142 7.5e-71 272.3 523 35.6
CiPaw.11G167700 Carya illinoinensis HOM05D005607 ORTHO05D008142 1.3e-70 271.6 523 33.7
HanXRQChr15g0495421 Helianthus annuus HOM05D005607 ORTHO05D008142 1.3e-70 271.6 524 36.1
Duzib213G0871 Durio zibethinus HOM05D005607 ORTHO05D008142 1.7e-70 271.2 505 36.2
AT3G15180 Arabidopsis thaliana HOM05D005607 ORTHO05D008142 2.2e-70 270.8 530 35.7
Thhalv10020515m.g Eutrema salsugineum HOM05D005607 ORTHO05D008142 8.3e-70 268.9 526 35.2
Lalb_Chr19g0134061 Lupinus albus HOM05D005607 ORTHO05D008142 1.1e-69 268.5 534 34.6
arahy.Tifrunner.gnm1.ann1.K8QLTQ Arachis hypogaea HOM05D005607 ORTHO05D008142 1.4e-69 268.1 528 34.1
Sabra16G0259600 Salix brachista HOM05D005607 ORTHO05D008142 1.4e-69 268.1 529 35.9
ClCG11G017810 Citrullus lanatus HOM05D005607 ORTHO05D008142 1.8e-69 267.7 538 33.1
CSS0003695 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 2.4e-69 267.3 535 35.7
Lsat_1_v5_gn_7_104480 Lactuca sativa HOM05D005607 ORTHO05D008142 2.4e-69 267.3 529 35.3
CANSAT35G0745 Cannabis sativa HOM05D005607 ORTHO05D008142 5.4e-69 266.2 523 34.4
FAN16G0865 Fragaria x ananassa HOM05D005607 ORTHO05D008142 7.0e-69 265.8 542 34.9
Potri.001G396500 Populus trichocarpa HOM05D005607 ORTHO05D008142 7.0e-69 265.8 525 34.9
Atru.chr2.2407 Acer truncatum HOM05D005607 ORTHO05D008142 3.5e-68 263.5 526 34.6
BolC5t33890H Brassica oleracea HOM05D005607 ORTHO05D008142 3.5e-68 263.5 537 34.6
Glyma.06G236100 Glycine max HOM05D005607 ORTHO05D008142 3.5e-68 263.5 532 33.8
Sp3g13390 Schrenkiella parvula HOM05D005607 ORTHO05D008142 3.5e-68 263.5 530 35.5
arahy.Tifrunner.gnm1.ann1.3D346W Arachis hypogaea HOM05D005607 ORTHO05D008142 4.5e-68 263.1 532 34.0
TPR.G28174 Trifolium pratense HOM05D005607 ORTHO05D008142 4.5e-68 263.1 527 34.2
Actinidia31524 Actinidia chinensis HOM05D005607 ORTHO05D008142 5.9e-68 262.7 521 35.7
Lj3g0025006 Lotus japonicus HOM05D005607 ORTHO05D008142 5.9e-68 262.7 526 33.7
ECA236G2999 Erigeron canadensis HOM05D005607 ORTHO05D008142 7.7e-68 262.3 529 35.3
AL3G27570 Arabidopsis lyrata HOM05D005607 ORTHO05D008142 1.0e-67 261.9 530 34.9
C05p52050 Brassica napus HOM05D005607 ORTHO05D008142 2.3e-67 260.8 514 36.0
Rhsim06G0202700 Rhododendron simsii HOM05D005607 ORTHO05D008142 2.9e-67 260.4 538 34.2
BraA05t22250Z Brassica rapa HOM05D005607 ORTHO05D008142 3.8e-67 260.0 530 35.1
Ca_23036_v3 Cicer arietinum L. HOM05D005607 ORTHO05D008142 6.6e-67 259.2 527 33.8
Medtr8g058790 Medicago truncatula HOM05D005607 ORTHO05D008142 8.6e-67 258.8 536 34.5
Medtr8g061280 Medicago truncatula HOM05D005607 ORTHO05D008142 8.6e-67 258.8 536 34.5
Aqoxy4G00691 Aquilegia oxysepala HOM05D005607 ORTHO05D008142 7.3e-66 255.8 465 36.3
Carub.0003s1483 Capsella rubella HOM05D005607 ORTHO05D008142 1.2e-65 255.0 526 34.4
Os05g0557200 Oryza sativa ssp. japonica HOM05D005607 ORTHO05D008142 1.2e-65 255.0 527 33.8
Ah.06g184600 Amaranthus hybridus HOM05D005607 ORTHO05D008142 4.7e-65 253.1 528 33.5
DCAR_017123 Daucus carota HOM05D005607 ORTHO05D008142 4.7e-65 253.1 561 31.6
Manes.03G105800 Manihot esculenta HOM05D005607 ORTHO05D008142 1.0e-64 251.9 527 34.0
A05p34290 Brassica napus HOM05D005607 ORTHO05D008142 2.3e-64 250.8 514 35.0
Eucgr.F00890 Eucalyptus grandis HOM05D005607 ORTHO05D008142 2.3e-64 250.8 517 33.8
Zm00001eb295460 Zea mays HOM05D005607 ORTHO05D008142 3.0e-64 250.4 519 34.5
EL10Ac4g08241 Beta vulgaris HOM05D005607 ORTHO05D008142 2.0e-63 247.7 524 32.4
SGA_v2.0_scaffold130G34350 Striga asiatica HOM05D005607 ORTHO05D008142 4.4e-63 246.5 560 33.8
Eucgr.F01141 Eucalyptus grandis HOM05D005607 ORTHO05D008142 5.7e-63 246.1 517 33.3
Oeu005401.4 Olea europaea HOM05D005607 ORTHO05D008142 7.5e-63 245.7 643 30.6
Aa31LG8G2380 Aethionema arabicum HOM05D005607 ORTHO05D008142 9.8e-63 245.4 532 32.9
BcaB06g29542 Brassica carinata HOM05D005607 ORTHO05D008142 9.8e-63 245.4 530 34.5
Migut.H01958 Erythranthe guttata HOM05D005607 ORTHO05D008142 5.4e-61 239.6 442 38.0
MD11G1253400 Malus domestica HOM05D005607 ORTHO05D008142 9.2e-61 238.8 460 33.9
Phvul.011G160300 Phaseolus vulgaris HOM05D005607 ORTHO05D008142 1.7e-59 234.6 456 35.5
Duzib170G0139 Durio zibethinus HOM05D005607 ORTHO05D008142 5.6e-58 229.6 521 32.2
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 1.2e-57 228.4 566 30.0
Hund02235 Selenicereus undatus HOM05D005607 ORTHO05D008142 8.0e-57 225.7 402 38.1
Lj1A839T37 Lonicera japonica HOM05D005607 ORTHO05D008142 6.0e-52 209.5 398 36.7
Lj1A839T35 Lonicera japonica HOM05D005607 ORTHO05D008142 4.4e-47 193.4 413 34.1
Psat7g207160 Pisum sativum HOM05D005607 ORTHO05D008142 9.8e-47 192.2 426 34.0
AUR62036159 Chenopodium quinoa HOM05D005607 ORTHO05D008142 3.2e-45 187.2 398 33.9
AUR62019473 Chenopodium quinoa HOM05D005607 ORTHO05D008142 1.2e-44 185.3 427 31.4
Solyc07g062860.3 Solanum lycopersicum HOM05D005607 ORTHO05D008142 3.3e-42 177.2 325 35.7
Peaxi162Scf00069g01839 Petunia axillaris HOM05D005607 ORTHO05D008142 1.2e-41 175.3 325 35.4
CBR_g2884 Chara braunii HOM05D005607 ORTHO05D008142 1.1e-40 172.2 298 37.6
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 1.2e-36 158.7 349 35.0
SMO139G0007 Selaginella moellendorffii HOM05D033350 ORTHO05D377793 4.7e-33 146.7 427 35.1
MBI06_g04182_MAGBIO Magnolia biondii HOM05D005607 ORTHO05D008142 4.0e-32 143.7 265 38.5
SalBow7G3213 Salvia bowleyana HOM05D005607 ORTHO05D008142 8.9e-32 142.5 294 35.0
SalBow7G3521 Salvia bowleyana HOM05D005607 ORTHO05D008142 8.9e-32 142.5 294 35.0
Peaxi162Scf00069g01838 Petunia axillaris HOM05D005607 ORTHO05D008142 6.9e-24 116.3 163 41.1
QL08p023962 Quercus lobata HOM05D005607 ORTHO05D008142 1.2e-23 115.5 236 32.6
QL08p023973 Quercus lobata HOM05D005607 ORTHO05D008142 1.2e-23 115.5 196 35.7
Glyma.12G162201 Glycine max HOM05D005607 ORTHO05D008142 1.9e-21 108.2 164 38.4
FAN11G3919 Fragaria x ananassa HOM05D005607 ORTHO05D008142 4.2e-21 107.1 221 32.6
PGSC0003DMG400012404 Solanum tuberosum HOM05D005607 ORTHO05D008142 1.3e-19 102.1 208 34.6
CARHR090160 Cardamine hirsuta HOM05D005607 ORTHO05D008142 1.1e-18 99.0 220 31.8
SMO139G0011 Selaginella moellendorffii HOM05D033350 ORTHO05D377950 1.5e-18 98.6 353 36.0
SEGI_17376 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 1.5e-18 98.6 143 42.0
SEGI_34734 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 5.6e-18 96.7 111 44.1
MD11G1279000 Malus domestica HOM05D005607 ORTHO05D008142 2.1e-17 94.7 247 33.6
SMO145G0050 Selaginella moellendorffii HOM05D033350 ORTHO05D374800 1.2e-12 79.0 157 42.7
FAN25G1444 Fragaria x ananassa HOM05D005607 ORTHO05D008142 4.3e-10 70.5 101 33.7
Cre05.g246300 Chlamydomonas reinhardtii HOM05D005607 ORTHO05D008142 8.2e-09 66.2 213 31.5
QL08p023949 Quercus lobata HOM05D005607 ORTHO05D008142 2.4e-08 64.7 93 37.6
CBR_g2888 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-07 61.6 77 41.6


User provided reference genes

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