Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 4.2e-130 468.0 231 100.0
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 4.4e-87 325.1 225 68.9
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.3e-86 323.6 225 68.0
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.8e-86 322.4 225 67.1
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.8e-86 322.4 225 67.1
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 2.8e-86 322.4 227 67.8
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 8.3e-86 320.9 225 67.6
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 1.4e-85 320.1 225 67.6
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 1.4e-85 320.1 225 67.1
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 1.4e-85 320.1 227 67.0
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 1.4e-85 320.1 227 66.5
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 1.8e-85 319.7 225 67.6
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 2.4e-85 319.3 225 68.0
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 3.1e-85 318.9 225 67.6
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 3.1e-85 318.9 225 66.7
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 3.1e-85 318.9 225 67.1
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 4.1e-85 318.5 225 66.7
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 4.1e-85 318.5 225 67.1
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 4.1e-85 318.5 241 63.1
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 4.1e-85 318.5 225 68.0
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 5.4e-85 318.2 225 66.7
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 5.4e-85 318.2 225 67.6
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 9.1e-85 317.4 226 67.3
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 9.1e-85 317.4 241 63.1
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 9.1e-85 317.4 225 67.1
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 1.2e-84 317.0 227 66.5
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 1.2e-84 317.0 225 67.1
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 1.2e-84 317.0 225 67.1
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 1.6e-84 316.6 225 66.7
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.6e-84 316.6 225 66.7
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 2.0e-84 316.2 225 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.7e-84 315.8 223 67.3
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 2.7e-84 315.8 227 65.6
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 2.7e-84 315.8 227 65.6
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 2.7e-84 315.8 227 65.6
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.7e-84 315.8 225 66.7
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 2.7e-84 315.8 223 65.9
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 2.7e-84 315.8 226 66.4
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 3.5e-84 315.5 225 66.7
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 3.5e-84 315.5 225 66.2
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 4.5e-84 315.1 227 65.2
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 4.5e-84 315.1 224 67.0
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 5.9e-84 314.7 227 65.2
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 5.9e-84 314.7 227 65.6
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 5.9e-84 314.7 227 65.2
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 7.7e-84 314.3 225 66.7
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 7.7e-84 314.3 225 66.7
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 7.7e-84 314.3 227 66.5
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 1.0e-83 313.9 225 66.7
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 1.0e-83 313.9 225 64.9
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 1.0e-83 313.9 223 65.5
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 1.0e-83 313.9 225 65.8
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 1.7e-83 313.2 225 65.8
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 1.7e-83 313.2 226 65.9
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 1.7e-83 313.2 223 65.5
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 1.7e-83 313.2 224 66.1
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 2.3e-83 312.8 225 66.2
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 2.3e-83 312.8 225 66.2
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 2.9e-83 312.4 225 66.2
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 2.9e-83 312.4 225 65.3
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 2.9e-83 312.4 227 66.1
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 3.8e-83 312.0 223 65.0
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 3.8e-83 312.0 222 67.1
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 3.8e-83 312.0 223 65.5
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 5.0e-83 311.6 225 65.8
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 5.0e-83 311.6 219 67.6
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 5.0e-83 311.6 219 66.2
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 6.5e-83 311.2 225 65.8
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 6.5e-83 311.2 224 65.2
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 8.6e-83 310.8 225 64.9
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 8.6e-83 310.8 225 64.9
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.1e-82 310.5 225 65.8
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 1.5e-82 310.1 223 65.9
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 1.9e-82 309.7 225 66.7
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 1.9e-82 309.7 225 65.8
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 2.5e-82 309.3 249 60.6
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 3.3e-82 308.9 223 64.1
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 4.2e-82 308.5 222 64.9
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 5.5e-82 308.1 225 66.2
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 1.6e-81 306.6 224 64.3
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 2.1e-81 306.2 214 67.3
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 3.6e-81 305.4 223 64.6
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 4.7e-81 305.1 241 62.2
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 4.7e-81 305.1 225 64.9
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.0e-80 303.9 225 64.9
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 1.4e-80 303.5 225 64.9
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 1.8e-80 303.1 225 63.1
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 3.0e-80 302.4 216 65.7
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 4.0e-80 302.0 225 64.9
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 4.0e-80 302.0 219 65.3
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 6.8e-80 301.2 210 68.1
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 6.8e-80 301.2 221 66.1
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 8.9e-80 300.8 223 65.0
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 7.5e-79 297.7 219 66.7
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 2.2e-78 296.2 247 60.3
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 2.8e-78 295.8 223 62.8
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 2.8e-78 295.8 223 62.8
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 3.7e-78 295.4 223 62.8
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.9e-78 295.0 224 63.4
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 6.3e-78 294.7 223 61.9
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 8.3e-78 294.3 223 62.8
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.1e-77 293.9 260 57.7
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.4e-77 293.5 276 55.8
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 2.4e-77 292.7 225 63.1
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 7.0e-77 291.2 222 62.2
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.0e-76 289.7 211 65.9
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 3.5e-76 288.9 219 64.8
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 5.9e-76 288.1 225 62.7
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.0e-75 287.3 225 61.8
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.3e-75 287.0 219 61.6
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 2.9e-75 285.8 222 62.2
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 8.6e-75 284.3 217 64.1
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 4.7e-73 278.5 295 50.5
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 8.0e-73 277.7 203 65.0
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 5.2e-72 275.0 193 67.9
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 6.8e-72 274.6 190 68.9
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 8.3e-70 267.7 200 64.5
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.2e-68 263.8 185 64.3
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.6e-68 263.5 211 62.1
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.1e-66 257.3 224 54.9
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 7.3e-66 254.6 228 56.1
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 7.3e-66 254.6 183 65.6
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 1.6e-65 253.4 225 56.4
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 8.0e-65 251.1 186 63.4
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 5.8e-63 245.0 216 56.5
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 5.8e-63 245.0 216 56.5
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 5.6e-58 228.4 225 54.7
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.4e-55 219.2 225 47.6
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 6.2e-49 198.4 232 46.1
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.4e-48 197.2 232 45.7
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.8e-48 196.8 232 45.3
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 1.5e-47 193.7 216 48.6
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 1.1e-45 187.6 142 62.7
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 8.7e-43 177.9 142 61.3
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 5.6e-42 175.3 133 62.4
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.4e-39 166.0 368 32.1
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.7e-36 156.4 115 58.3
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 3.0e-35 152.9 112 65.2
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 2.8e-33 146.4 130 53.8
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 2.0e-31 140.2 137 52.6
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 6.4e-30 135.2 99 64.6
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.5e-28 129.4 121 56.2
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 3.0e-27 126.3 84 69.0
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 7.4e-26 121.7 81 67.9
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 4.8e-25 119.0 79 69.6
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 7.6e-23 111.7 131 48.9
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 1.1e-21 107.8 127 48.8
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 7.4e-18 95.1 66 68.2
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 2.1e-12 77.0 57 63.2
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 7.9e-12 75.1 57 61.4
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 3.9e-11 72.8 49 67.3
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.3e-06 57.8 176 31.2


User provided reference genes

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