Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.0e-250 869.8 490 100.0
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.1e-124 451.1 444 55.2
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 2.5e-124 449.9 452 54.2
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 3.3e-124 449.5 444 55.0
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 3.6e-123 446.0 453 54.3
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 4.0e-122 442.6 476 51.1
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 1.5e-121 440.7 464 53.4
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 5.8e-121 438.7 413 56.2
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 8.3e-120 434.9 452 52.7
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.9e-119 433.7 473 52.0
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.4e-119 433.3 452 53.3
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 5.4e-119 432.2 452 53.3
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 7.1e-119 431.8 461 51.0
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 2.1e-118 430.3 451 51.2
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 2.1e-118 430.3 451 51.4
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 2.7e-118 429.9 455 51.4
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.7e-118 429.9 463 49.9
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 2.7e-118 429.9 451 51.0
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 4.6e-118 429.1 479 50.5
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 6.0e-118 428.7 453 51.0
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 6.0e-118 428.7 453 51.0
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 7.8e-118 428.3 474 50.0
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 7.8e-118 428.3 452 51.8
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 7.8e-118 428.3 467 51.2
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 1.3e-117 427.6 448 53.3
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 3.0e-117 426.4 446 53.1
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 3.0e-117 426.4 445 51.0
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 6.6e-117 425.2 450 51.1
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 6.6e-117 425.2 456 52.2
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 6.6e-117 425.2 455 51.6
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 8.6e-117 424.9 451 52.5
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.5e-116 424.1 454 52.9
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 1.5e-116 424.1 449 52.3
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 1.5e-116 424.1 430 53.5
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.9e-116 423.7 465 50.5
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.9e-116 423.7 465 50.5
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 4.3e-116 422.5 456 51.1
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 7.3e-116 421.8 461 50.5
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 9.5e-116 421.4 465 50.1
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 1.2e-115 421.0 464 51.3
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.2e-115 421.0 451 53.2
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.6e-115 420.6 454 50.4
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.6e-115 420.6 449 51.7
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 3.6e-115 419.5 453 51.9
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 3.6e-115 419.5 452 50.0
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 4.7e-115 419.1 462 50.9
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.7e-115 419.1 454 50.4
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.7e-115 419.1 449 51.4
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.2e-115 418.7 454 50.4
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 6.2e-115 418.7 465 51.8
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 8.1e-115 418.3 450 51.6
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 8.1e-115 418.3 460 50.2
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 8.1e-115 418.3 430 53.0
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 1.1e-114 417.9 448 52.9
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.4e-114 417.5 465 51.6
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.4e-114 417.5 432 53.0
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.8e-114 417.2 465 49.2
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 2.3e-114 416.8 449 51.2
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 2.3e-114 416.8 454 50.2
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 3.1e-114 416.4 473 49.5
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 3.1e-114 416.4 473 49.7
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 3.1e-114 416.4 464 50.6
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 5.2e-114 415.6 449 51.0
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 6.8e-114 415.2 454 54.2
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 8.9e-114 414.8 453 50.3
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 8.9e-114 414.8 453 50.3
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.5e-113 414.1 449 51.4
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 1.5e-113 414.1 477 48.4
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 1.5e-113 414.1 493 47.5
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 2.0e-113 413.7 471 48.0
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 2.6e-113 413.3 446 51.3
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 5.8e-113 412.1 481 48.6
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 5.8e-113 412.1 448 51.1
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 7.6e-113 411.8 449 50.3
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 7.6e-113 411.8 425 54.8
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-112 411.0 465 49.2
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 1.3e-112 411.0 461 49.5
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 1.3e-112 411.0 454 49.3
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.7e-112 410.6 449 50.3
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 1.7e-112 410.6 452 50.7
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.1e-111 407.9 468 48.3
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 1.9e-111 407.1 449 50.8
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 5.4e-111 405.6 448 52.0
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 7.1e-111 405.2 443 49.9
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 9.2e-111 404.8 449 50.1
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 9.2e-111 404.8 486 46.3
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 3.5e-110 402.9 429 52.9
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 6.0e-110 402.1 449 50.6
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 3.0e-109 399.8 531 44.3
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 1.2e-107 394.4 453 51.4
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 3.1e-106 389.8 489 48.3
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 1.5e-105 387.5 450 48.9
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 3.4e-105 386.3 447 47.7
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 6.4e-104 382.1 446 49.8
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 4.2e-103 379.4 465 45.6
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 5.4e-103 379.0 405 52.1
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 7.1e-103 378.6 407 50.9
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.6e-102 377.5 548 42.0
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.7e-101 374.0 436 50.7
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.1e-100 371.3 471 46.3
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 6.2e-99 365.5 447 46.8
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 8.1e-99 365.2 533 43.7
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 2.7e-94 350.1 430 47.4
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 3.6e-91 339.7 388 47.9
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 9.0e-90 335.1 399 47.1
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 1.2e-89 334.7 389 47.6
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 7.6e-89 332.0 380 49.2
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 3.8e-88 329.7 377 49.1
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 7.9e-86 322.0 336 53.6
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.8e-83 312.8 437 45.8
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 6.2e-83 312.4 342 51.2
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 6.2e-83 312.4 411 43.8
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 1.4e-82 311.2 366 48.6
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 4.0e-82 309.7 484 39.5
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 2.0e-81 307.4 319 56.4
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 1.3e-72 278.1 438 41.8
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 1.6e-70 271.2 434 38.5
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 5.7e-60 236.1 494 36.4
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 3.7e-59 233.4 299 43.8
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.1e-50 205.3 304 43.1
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 1.6e-49 201.4 344 37.2
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 3.2e-47 193.7 211 45.5
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 1.8e-45 188.0 234 47.9
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 1.1e-39 168.7 141 64.5
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 4.1e-34 150.2 124 65.3
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 2.7e-33 147.5 245 39.6
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.3e-32 145.2 153 47.7
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.0e-29 135.6 243 39.1
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 2.3e-29 134.4 243 38.7
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 1.5e-28 131.7 107 64.5
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 4.1e-26 123.6 110 57.3
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.0e-26 122.9 99 64.6
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.6e-25 121.7 99 62.6
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 2.7e-25 120.9 127 52.0
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 3.5e-25 120.6 99 62.6
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 1.1e-23 115.5 238 37.0
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 4.3e-23 113.6 188 36.7
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 4.3e-23 113.6 110 50.9
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 7.3e-23 112.8 89 60.7
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 9.5e-23 112.5 205 37.1
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 6.1e-22 109.8 231 35.5
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-21 108.6 238 35.7
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 2.3e-21 107.8 79 68.4
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.4e-20 103.6 231 34.6
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 2.9e-19 100.9 89 56.2
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 7.0e-18 96.3 79 57.0
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 6.6e-16 89.7 106 48.1
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 1.5e-15 88.6 110 41.8
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 5.6e-15 86.7 237 31.6
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 8.0e-14 82.8 69 59.4
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.0e-13 82.4 62 71.0
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 1.2e-12 79.0 222 29.3
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 5.8e-12 76.6 123 37.4
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 7.5e-12 76.3 89 43.8
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 1.7e-11 75.1 77 51.9
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.7e-11 75.1 63 61.9
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 2.9e-11 74.3 222 28.8
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 9.5e-07 59.3 60 46.7
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 9.5e-07 59.3 60 46.7


User provided reference genes

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