Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 2.8e-194 681.8 353 100.0
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 9.9e-115 417.5 323 67.2
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 2.7e-112 409.5 327 66.1
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 3.5e-112 409.1 329 65.0
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 3.5e-112 409.1 329 65.0
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.8e-111 406.8 329 66.3
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 2.3e-111 406.4 329 65.7
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 2.3e-111 406.4 329 66.6
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 3.0e-111 406.0 326 66.0
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 6.7e-111 404.8 331 66.5
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 8.7e-111 404.4 329 65.0
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 1.5e-110 403.7 329 66.6
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 1.9e-110 403.3 329 65.7
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 2.5e-110 402.9 326 64.7
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 4.3e-110 402.1 326 65.6
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 4.3e-110 402.1 326 65.3
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 5.6e-110 401.7 331 65.3
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 7.4e-110 401.4 324 65.4
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 7.4e-110 401.4 326 66.3
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 9.6e-110 401.0 327 63.9
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 1.3e-109 400.6 326 66.3
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 4.8e-109 398.7 331 65.0
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 4.8e-109 398.7 329 65.0
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 6.2e-109 398.3 329 64.4
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 8.1e-109 397.9 325 66.8
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 1.1e-108 397.5 326 64.4
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 1.1e-108 397.5 329 64.7
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 1.8e-108 396.7 331 64.0
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 2.4e-108 396.4 335 62.4
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 3.1e-108 396.0 326 64.4
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 4.0e-108 395.6 328 63.7
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 4.0e-108 395.6 329 63.5
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 6.9e-108 394.8 331 63.7
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 6.9e-108 394.8 336 63.7
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 1.5e-107 393.7 329 64.1
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 2.6e-107 392.9 329 63.8
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 3.4e-107 392.5 329 64.4
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 4.5e-107 392.1 331 63.1
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 5.8e-107 391.7 330 63.6
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 5.8e-107 391.7 330 62.4
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 9.9e-107 391.0 334 63.2
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 1.7e-106 390.2 327 63.3
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 1.7e-106 390.2 330 62.4
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 2.2e-106 389.8 330 62.4
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 3.8e-106 389.0 326 64.4
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 6.4e-106 388.3 333 62.5
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.1e-105 387.5 327 61.8
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 1.1e-105 387.5 329 63.2
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 1.4e-105 387.1 330 63.0
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 4.2e-105 385.6 329 62.6
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 9.3e-105 384.4 335 63.3
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.2e-104 384.0 329 62.3
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 1.2e-104 384.0 330 61.8
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 6.0e-104 381.7 329 61.7
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 6.0e-104 381.7 325 60.6
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 6.0e-104 381.7 327 62.4
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.8e-103 380.2 326 64.7
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 1.8e-103 380.2 329 62.0
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 3.9e-103 379.0 329 62.6
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 6.7e-103 378.3 326 63.8
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 1.1e-102 377.5 326 61.7
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.1e-102 377.5 319 64.9
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 2.5e-102 376.3 326 62.6
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 9.6e-102 374.4 329 62.0
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 1.3e-101 374.0 330 60.6
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 1.3e-101 374.0 326 61.3
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 2.1e-101 373.2 331 60.4
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 2.1e-101 373.2 330 60.6
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.8e-101 372.9 330 60.6
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 4.8e-101 372.1 327 61.8
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 6.2e-101 371.7 326 60.7
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.4e-100 370.5 320 64.4
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 4.0e-100 369.0 327 61.8
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 4.0e-100 369.0 329 60.8
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 5.3e-100 368.6 340 60.6
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 6.9e-100 368.2 331 59.8
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 9.0e-100 367.9 343 58.9
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 1.2e-99 367.5 326 60.4
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.5e-99 367.1 332 59.9
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 2.0e-99 366.7 326 60.1
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 2.0e-99 366.7 329 61.7
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.0e-99 366.7 327 61.2
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 2.6e-99 366.3 331 61.6
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 3.4e-99 365.9 335 58.5
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 3.4e-99 365.9 335 58.5
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 4.5e-99 365.5 335 58.5
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 5.8e-99 365.2 337 58.5
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 5.8e-99 365.2 326 60.1
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.0e-98 364.4 326 60.1
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 1.0e-98 364.4 326 60.7
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 1.0e-98 364.4 326 60.4
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 1.0e-98 364.4 326 60.4
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 1.3e-98 364.0 324 62.3
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.3e-98 364.0 329 59.0
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 4.9e-98 362.1 326 59.5
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 6.5e-98 361.7 332 59.0
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 2.5e-97 359.8 331 58.3
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 3.2e-97 359.4 324 61.7
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 3.2e-97 359.4 324 61.7
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 5.5e-97 358.6 326 60.7
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 2.1e-96 356.7 329 60.8
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 3.5e-96 355.9 329 59.6
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 1.0e-95 354.4 287 63.1
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.3e-95 354.0 346 56.9
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 2.3e-95 353.2 326 58.6
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 2.3e-95 353.2 332 59.3
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 3.9e-95 352.4 333 58.3
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 5.1e-95 352.1 320 61.2
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 1.1e-94 350.9 326 60.1
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.1e-94 350.9 330 57.0
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 5.7e-94 348.6 313 60.7
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 7.4e-94 348.2 326 59.8
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 3.7e-93 345.9 326 57.1
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 6.3e-93 345.1 287 63.8
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.1e-92 342.8 302 58.3
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 6.9e-92 341.7 326 58.0
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 1.5e-91 340.5 336 55.7
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 2.6e-91 339.7 326 58.6
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 5.9e-91 338.6 329 58.7
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 2.9e-90 336.3 283 65.4
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 4.2e-89 332.4 334 55.1
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 4.6e-88 328.9 347 55.3
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 6.7e-87 325.1 334 54.8
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 1.0e-82 311.2 284 63.0
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 8.5e-82 308.1 327 52.9
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 1.1e-81 307.8 335 53.1
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 9.4e-81 304.7 264 65.5
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 4.6e-80 302.4 266 60.9
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.4e-79 300.8 353 51.6
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.8e-76 290.4 297 53.5
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.5e-75 287.3 265 60.0
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 2.6e-75 286.6 252 61.5
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 4.7e-72 275.8 255 62.7
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.0e-71 274.6 321 50.5
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.2e-66 256.9 288 54.9
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 1.0e-63 248.1 203 67.0
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.5e-62 244.2 225 62.7
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 2.8e-61 240.0 288 47.6
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 9.5e-41 171.8 129 72.9
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 2.1e-40 170.6 159 60.4
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 7.0e-28 129.0 127 49.6
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 1.6e-24 117.9 102 62.7
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 6.2e-24 115.9 105 61.0
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 6.2e-24 115.9 107 49.5
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 6.8e-23 112.5 81 74.1
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 1.5e-22 111.3 107 58.9
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.4e-22 110.2 103 59.2
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 9.2e-20 102.1 79 55.7
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 1.6e-19 101.3 70 60.0
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 2.3e-18 97.4 98 48.0
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 3.9e-18 96.7 97 53.6
MCO09G810 Micromonas commoda HOM05D004327 ORTHO05D005032 1.7e-13 81.3 163 34.4
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.9e-13 80.5 126 44.4
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 1.1e-12 78.6 58 69.0
PRCOL_00002192 Prasinoderma coloniale HOM05D004327 ORTHO05D005032 3.2e-12 77.0 251 25.9
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.1e-10 69.7 92 44.6
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 1.1e-07 62.0 116 35.3
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 3.4e-06 57.0 72 45.8


User provided reference genes

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