Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 1.0e-259 899.4 429 100.0
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 1.1e-171 607.1 419 68.0
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 3.0e-166 589.0 418 67.0
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 8.8e-166 587.4 419 67.1
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 1.1e-165 587.0 418 66.5
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 1.5e-165 586.6 417 66.9
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 2.0e-165 586.3 418 66.5
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 2.0e-165 586.3 417 67.4
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 2.6e-165 585.9 417 67.4
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 5.7e-165 584.7 417 67.6
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 5.7e-165 584.7 417 66.7
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 5.7e-165 584.7 417 67.4
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 7.4e-165 584.3 418 66.0
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 2.2e-164 582.8 417 66.4
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 3.7e-164 582.0 417 66.4
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 6.3e-164 581.3 419 66.8
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 8.2e-164 580.9 417 67.1
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 1.1e-163 580.5 417 65.5
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 1.1e-163 580.5 422 65.6
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 1.1e-163 580.5 419 67.3
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 1.1e-163 580.5 417 66.2
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 1.4e-163 580.1 417 66.2
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 1.4e-163 580.1 415 66.5
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 1.8e-163 579.7 417 65.5
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 2.4e-163 579.3 418 64.6
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 2.4e-163 579.3 417 66.9
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 3.1e-163 578.9 423 66.2
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 3.1e-163 578.9 419 67.1
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 4.1e-163 578.6 419 66.3
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 4.1e-163 578.6 417 65.7
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 5.3e-163 578.2 418 65.3
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 5.3e-163 578.2 419 65.2
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 9.1e-163 577.4 417 65.7
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 9.1e-163 577.4 415 67.5
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 1.6e-162 576.6 427 66.5
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 1.6e-162 576.6 419 64.2
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 1.6e-162 576.6 417 65.2
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.6e-162 576.6 417 65.2
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.0e-162 576.2 419 66.1
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 2.0e-162 576.2 415 67.0
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 3.5e-162 575.5 417 66.2
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 3.5e-162 575.5 417 65.7
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 4.5e-162 575.1 418 64.4
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 4.5e-162 575.1 419 66.3
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 5.9e-162 574.7 426 64.1
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 7.7e-162 574.3 417 65.0
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 1.0e-161 573.9 417 65.9
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 1.7e-161 573.2 417 64.5
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 1.7e-161 573.2 417 64.3
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 2.9e-161 572.4 416 65.6
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 2.9e-161 572.4 417 65.0
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 2.9e-161 572.4 417 65.2
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 3.8e-161 572.0 421 65.3
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 3.8e-161 572.0 417 65.0
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 3.8e-161 572.0 417 64.5
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 3.8e-161 572.0 417 64.7
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 5.0e-161 571.6 419 65.6
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 5.0e-161 571.6 417 65.7
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 5.0e-161 571.6 417 66.2
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 6.5e-161 571.2 417 64.5
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 6.5e-161 571.2 419 65.4
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 6.5e-161 571.2 418 64.4
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 6.5e-161 571.2 417 63.8
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 6.5e-161 571.2 417 65.2
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 8.5e-161 570.9 418 64.6
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 8.5e-161 570.9 417 65.5
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 8.5e-161 570.9 417 65.7
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 1.5e-160 570.1 414 65.2
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 1.9e-160 569.7 417 64.5
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 2.5e-160 569.3 417 66.2
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 2.5e-160 569.3 417 65.0
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 3.2e-160 568.9 417 64.7
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 5.5e-160 568.2 419 64.9
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 5.5e-160 568.2 417 64.7
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 9.4e-160 567.4 417 64.7
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 2.1e-159 566.2 417 64.3
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 2.1e-159 566.2 417 64.7
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 3.6e-159 565.5 417 64.5
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 3.6e-159 565.5 425 63.3
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 4.7e-159 565.1 417 65.5
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 1.0e-158 563.9 417 63.3
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 1.4e-158 563.5 417 64.5
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 3.0e-158 562.4 450 61.3
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 3.0e-158 562.4 424 62.5
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 4.0e-158 562.0 417 64.0
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 5.7e-157 558.1 418 63.9
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 9.7e-157 557.4 444 61.7
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 9.7e-157 557.4 444 61.7
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 1.2e-154 550.4 405 64.9
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 2.0e-154 549.7 459 59.0
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 2.7e-154 549.3 405 64.9
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 7.7e-154 547.7 424 61.3
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 2.9e-153 545.8 425 63.1
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 2.9e-153 545.8 417 62.6
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 3.8e-153 545.4 397 65.2
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 6.5e-153 544.7 403 64.8
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 1.5e-152 543.5 418 62.0
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 3.2e-152 542.3 403 64.5
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 9.4e-152 540.8 400 65.2
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 9.4e-152 540.8 395 65.6
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 9.4e-152 540.8 429 60.4
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 1.2e-151 540.4 417 62.1
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 2.3e-150 536.2 410 62.7
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 5.2e-150 535.0 384 65.9
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 5.7e-149 531.6 454 57.3
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 9.8e-149 530.8 424 59.4
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 8.3e-148 527.7 502 53.6
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 1.4e-147 526.9 407 63.1
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 2.9e-145 519.2 433 59.8
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 1.8e-142 510.0 457 56.5
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 4.4e-141 505.4 360 66.7
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 1.1e-139 500.7 398 61.8
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 9.5e-136 487.6 417 57.8
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 9.8e-133 477.6 417 57.8
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 8.6e-129 464.5 469 50.1
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 1.2e-127 460.7 366 59.8
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 4.7e-127 458.8 424 51.7
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 1.1e-126 457.6 416 56.2
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 5.2e-126 455.3 374 61.2
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 8.6e-121 438.0 301 69.4
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 5.6e-120 435.3 414 55.1
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 5.2e-118 428.7 472 47.5
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 2.8e-111 406.4 435 50.8
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 1.6e-106 390.6 423 48.9
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 2.6e-101 373.2 365 53.2
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 9.9e-101 371.3 470 46.4
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 1.2e-98 364.4 463 45.8
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 3.4e-40 170.2 118 65.3
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 6.6e-28 129.4 118 52.5
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 3.3e-27 127.1 93 67.7
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 2.9e-23 114.0 89 59.6
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 2.9e-23 114.0 89 59.6
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 2.4e-22 110.9 105 53.3
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 8.3e-15 85.9 68 60.3
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 2.4e-14 84.3 66 60.6
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 4.1e-14 83.6 69 56.5
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.2e-13 82.0 55 63.6
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 6.0e-13 79.7 96 49.0
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 2.3e-12 77.8 64 57.8
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 7.5e-08 62.8 209 26.8
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 2.4e-06 57.8 37 64.9


User provided reference genes

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