Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO137G0223 Selaginella moellendorffii HOM05D064925 ORTHO05D050864 8.3e-216 753.4 382 100.0
SMO169G0147 Selaginella moellendorffii HOM05D064925 ORTHO05D050864 2.9e-27 127.1 129 51.2
SGA_v2.0_scaffold9G04775 Striga asiatica HOM05D000466 ORTHO05D000331 1.0e-08 65.5 117 36.8
MD17G1073700 Malus domestica HOM05D000466 ORTHO05D000331 6.7e-08 62.8 122 36.1
Lalb_Chr04g0254901 Lupinus albus HOM05D000466 ORTHO05D000331 1.5e-07 61.6 108 37.0
Rhsim09G0111800 Rhododendron simsii HOM05D000466 ORTHO05D000331 1.5e-07 61.6 128 34.4
Psat2g090320 Pisum sativum HOM05D000466 ORTHO05D000331 2.0e-07 61.2 105 36.2
CSS0034576 Camellia sinensis var. sinensis HOM05D000466 ORTHO05D000331 3.3e-07 60.5 144 31.9
Atru.chr11.1347 Acer truncatum HOM05D000466 ORTHO05D000331 4.3e-07 60.1 116 32.8
Hma1.2p1_0862F.1_g229920 Hydrangea macrophylla HOM05D000466 ORTHO05D000331 4.3e-07 60.1 129 34.9
Atru.chr8.840 Acer truncatum HOM05D000466 ORTHO05D000331 7.4e-07 59.3 92 38.0
EL10Ac6g15604 Beta vulgaris HOM05D000466 ORTHO05D000331 7.4e-07 59.3 99 34.3
TPR.G25951 Trifolium pratense HOM05D000466 ORTHO05D000331 7.4e-07 59.3 113 33.6
CSS0022168 Camellia sinensis var. sinensis HOM05D000466 ORTHO05D000331 9.7e-07 58.9 176 28.4
Ca_26069_v3 Cicer arietinum L. HOM05D000466 ORTHO05D000331 9.7e-07 58.9 97 37.1
Sed0005926 Sechium edule HOM05D000466 ORTHO05D000331 9.7e-07 58.9 117 31.6
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-06 58.5 117 29.9
VMungo1215G2596 Vigna mungo HOM05D000466 ORTHO05D000331 1.3e-06 58.5 94 37.2
Phvul.003G111800 Phaseolus vulgaris HOM05D000466 ORTHO05D000331 1.7e-06 58.2 94 37.2
HPP92_020890 Vanilla planifolia HOM05D000466 ORTHO05D000331 1.7e-06 58.2 89 41.6
A06p02930 Brassica napus HOM05D000466 ORTHO05D000331 2.2e-06 57.8 111 38.7
A09p01060 Brassica napus HOM05D000466 ORTHO05D000331 2.2e-06 57.8 97 30.9
BraA09t35777Z Brassica rapa HOM05D000466 ORTHO05D000331 2.2e-06 57.8 97 30.9
Cfa018625 Carpinus fangiana HOM05D000466 ORTHO05D000331 2.2e-06 57.8 134 31.3
Lj3P1071T18 Lonicera japonica HOM05D000466 ORTHO05D000331 2.2e-06 57.8 113 36.3
MD09G1084100 Malus domestica HOM05D000466 ORTHO05D000331 2.2e-06 57.8 128 34.4
SalBow2G3230 Salvia bowleyana HOM05D000466 ORTHO05D000331 2.2e-06 57.8 102 36.3
BraA08t34652Z Brassica rapa HOM05D000466 ORTHO05D000331 2.8e-06 57.4 114 31.6
Ciclev10012300m.g Citrus clementina HOM05D000466 ORTHO05D000331 2.8e-06 57.4 100 35.0
Gohir.D01G193800 Gossypium hirsutum HOM05D000466 ORTHO05D000331 2.8e-06 57.4 131 31.3
Gorai.002G237900 Gossypium raimondii HOM05D000466 ORTHO05D000331 2.8e-06 57.4 131 31.3
Sed0024718 Sechium edule HOM05D000466 ORTHO05D000331 2.8e-06 57.4 112 33.9
Zm00001eb124740 Zea mays HOM05D000466 ORTHO05D000331 2.8e-06 57.4 131 29.8
arahy.Tifrunner.gnm1.ann1.PDF2MW Arachis hypogaea HOM05D000466 ORTHO05D000331 3.7e-06 57.0 123 34.1
arahy.Tifrunner.gnm1.ann1.QDL5QZ Arachis hypogaea HOM05D000466 ORTHO05D000331 3.7e-06 57.0 123 34.1
A08p27070 Brassica napus HOM05D000466 ORTHO05D000331 3.7e-06 57.0 114 31.6
Ciclev10010403m.g Citrus clementina HOM05D000466 ORTHO05D000331 3.7e-06 57.0 96 37.5
DCAR_026717 Daucus carota HOM05D000466 ORTHO05D000331 3.7e-06 57.0 87 37.9
Dinv16504 Davidia involucrata HOM05D000466 ORTHO05D000331 3.7e-06 57.0 115 33.0
Medtr5g053920 Medicago truncatula HOM05D000466 ORTHO05D000331 3.7e-06 57.0 97 37.1
Potri.008G117100 Populus trichocarpa HOM05D000466 ORTHO05D000331 3.7e-06 57.0 109 34.9
Prupe.7G100600 Prunus persica HOM05D000466 ORTHO05D000331 3.7e-06 57.0 107 35.5
Thecc.04G138100 Theobroma cacao HOM05D000466 ORTHO05D000331 3.7e-06 57.0 91 36.3
ClCG05G023000 Citrullus lanatus HOM05D000466 ORTHO05D000331 4.8e-06 56.6 111 34.2
Lsat_1_v5_gn_1_78300 Lactuca sativa HOM05D000466 ORTHO05D000331 4.8e-06 56.6 87 36.8
MD09G1083900 Malus domestica HOM05D000466 ORTHO05D000331 4.8e-06 56.6 119 34.5
Sabra10G0098300 Salix brachista HOM05D000466 ORTHO05D000331 4.8e-06 56.6 91 37.4
BcaC04g24091 Brassica carinata HOM05D000466 ORTHO05D000331 6.3e-06 56.2 97 29.9
C06p05690 Brassica napus HOM05D000466 ORTHO05D000331 6.3e-06 56.2 92 41.3
C09p01150 Brassica napus HOM05D000466 ORTHO05D000331 6.3e-06 56.2 97 29.9
BolC9t53048H Brassica oleracea HOM05D000466 ORTHO05D000331 6.3e-06 56.2 97 29.9
RcHm_v2.0_Chr4g0435771 Rosa chinensis HOM05D000466 ORTHO05D000331 6.3e-06 56.2 158 31.6
unitig_14.g30623 Utricularia gibba HOM05D000466 ORTHO05D000331 6.3e-06 56.2 122 32.8
unitig_749.g13309 Utricularia gibba HOM05D000466 ORTHO05D000331 6.3e-06 56.2 110 34.5
BraA06t23498Z Brassica rapa HOM05D000466 ORTHO05D000331 8.2e-06 55.8 111 37.8
CSS0037887 Camellia sinensis var. sinensis HOM05D000466 ORTHO05D000331 8.2e-06 55.8 176 27.8
Haze_14124 Corylus avellana HOM05D000466 ORTHO05D000331 8.2e-06 55.8 112 34.8
Glyma.01G087500 Glycine max HOM05D000466 ORTHO05D000331 8.2e-06 55.8 97 36.1
MD14G1032300 Malus domestica HOM05D000466 ORTHO05D000331 8.2e-06 55.8 117 32.5
MD17G1073800 Malus domestica HOM05D000466 ORTHO05D000331 8.2e-06 55.8 119 34.5


User provided reference genes

Program Settings