Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 9.2e-107 390.2 191 100.0
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 1.5e-93 346.3 191 86.9
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 8.3e-92 340.5 191 86.4
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 2.7e-90 335.5 188 84.0
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 4.6e-90 334.7 189 85.2
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 4.6e-90 334.7 188 84.6
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.9e-89 331.6 188 81.9
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 3.3e-88 328.6 188 82.4
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 5.2e-86 321.2 188 78.2
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 5.2e-86 321.2 188 78.2
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 6.8e-86 320.9 188 78.2
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 6.8e-86 320.9 188 77.7
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 6.8e-86 320.9 188 78.7
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 8.9e-86 320.5 188 77.1
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 8.9e-86 320.5 188 77.7
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 8.9e-86 320.5 188 77.7
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 8.9e-86 320.5 188 79.3
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 1.2e-85 320.1 188 77.7
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 1.5e-85 319.7 188 77.7
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.5e-85 319.7 188 77.7
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.5e-85 319.7 188 77.7
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.5e-85 319.7 188 77.7
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 2.0e-85 319.3 188 78.2
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.6e-85 318.9 188 77.7
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 4.4e-85 318.2 188 77.7
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 4.4e-85 318.2 188 78.2
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 4.4e-85 318.2 188 77.1
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 5.8e-85 317.8 188 78.2
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 5.8e-85 317.8 188 76.6
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 7.6e-85 317.4 188 77.1
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 7.6e-85 317.4 188 76.6
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 7.6e-85 317.4 188 76.6
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 9.9e-85 317.0 188 76.6
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 9.9e-85 317.0 188 76.6
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 9.9e-85 317.0 188 77.7
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 9.9e-85 317.0 191 75.4
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.3e-84 316.6 188 76.6
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.3e-84 316.6 191 75.4
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 1.3e-84 316.6 191 77.0
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 1.3e-84 316.6 188 76.6
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 1.7e-84 316.2 188 76.6
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 1.7e-84 316.2 188 76.6
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.7e-84 316.2 188 76.6
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.7e-84 316.2 188 76.6
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.7e-84 316.2 188 76.6
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 1.7e-84 316.2 188 76.6
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.7e-84 316.2 188 75.5
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 1.7e-84 316.2 188 75.5
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 2.2e-84 315.8 188 76.6
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 2.2e-84 315.8 188 77.1
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 2.9e-84 315.5 188 76.6
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 2.9e-84 315.5 188 76.1
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.9e-84 315.5 188 76.6
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 3.8e-84 315.1 191 74.9
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 3.8e-84 315.1 188 76.6
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 3.8e-84 315.1 188 76.6
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 3.8e-84 315.1 188 76.6
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 3.8e-84 315.1 188 76.6
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 3.8e-84 315.1 188 77.1
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 4.9e-84 314.7 188 75.0
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 4.9e-84 314.7 197 76.1
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 6.4e-84 314.3 188 75.5
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 6.4e-84 314.3 188 76.1
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 6.4e-84 314.3 188 75.5
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 6.4e-84 314.3 187 78.1
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 8.4e-84 313.9 188 75.5
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 8.4e-84 313.9 188 75.5
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 8.4e-84 313.9 188 76.6
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.4e-83 313.2 188 76.6
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 1.4e-83 313.2 189 75.1
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 1.4e-83 313.2 188 76.6
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 2.4e-83 312.4 188 76.1
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 4.1e-83 311.6 188 75.0
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 4.1e-83 311.6 188 75.5
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 9.2e-83 310.5 200 72.5
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 1.6e-82 309.7 188 73.4
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 2.1e-82 309.3 188 75.0
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 4.6e-82 308.1 188 74.5
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 6.0e-82 307.8 183 74.9
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.0e-81 307.0 189 75.1
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 1.3e-81 306.6 188 72.9
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 2.3e-81 305.8 202 72.3
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 3.0e-81 305.4 195 72.8
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 5.1e-81 304.7 188 71.3
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 6.6e-81 304.3 211 67.8
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 1.5e-80 303.1 190 70.0
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 1.9e-80 302.8 215 67.0
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 1.9e-80 302.8 188 70.7
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 2.5e-80 302.4 188 69.7
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 2.5e-80 302.4 188 70.2
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 2.5e-80 302.4 195 72.3
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 3.3e-80 302.0 189 70.4
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 4.3e-80 301.6 189 70.4
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 5.6e-80 301.2 189 70.4
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 5.6e-80 301.2 189 69.8
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 9.6e-80 300.4 188 69.1
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 1.2e-79 300.1 189 69.8
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 1.6e-79 299.7 188 69.7
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 3.6e-79 298.5 188 69.1
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 6.2e-79 297.7 188 69.1
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 4.0e-78 295.0 215 65.1
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 7.6e-77 290.8 229 61.6
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 4.2e-75 285.0 169 76.9
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 3.5e-74 282.0 182 72.5
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 3.5e-74 282.0 182 72.5
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 2.3e-73 279.3 169 75.1
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 2.5e-72 275.8 169 69.8
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 3.3e-72 275.4 168 75.6
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.6e-71 273.1 161 77.6
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 8.1e-71 270.8 160 77.5
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 6.4e-68 261.2 160 74.4
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 2.4e-67 259.2 188 65.4
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 7.1e-67 257.7 162 72.8
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 3.6e-63 245.4 210 58.6
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 1.8e-62 243.0 169 68.6
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.9e-59 233.0 183 61.7
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.1e-58 229.6 190 60.0
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.1e-54 217.2 207 52.2
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 1.7e-52 209.9 140 69.3
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 9.3e-51 204.1 111 82.0
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 2.8e-47 192.6 111 78.4
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 3.1e-46 189.1 107 76.6
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 6.9e-46 188.0 149 61.7
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 1.6e-42 176.8 129 64.3
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 2.3e-41 172.9 109 72.5
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.1e-40 170.6 109 73.4
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 2.5e-40 169.5 109 70.6
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.3e-39 167.2 158 51.9
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 7.2e-35 151.4 79 83.5
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 7.2e-35 151.4 155 48.4
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 2.1e-34 149.8 79 83.5
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 2.1e-34 149.8 98 71.4
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 6.1e-34 148.3 80 82.5
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 3.0e-33 146.0 79 81.0
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 5.3e-30 135.2 71 83.1
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 1.1e-27 127.5 68 82.4
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 3.2e-27 125.9 84 67.9
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 9.4e-27 124.4 68 76.5
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 9.4e-27 124.4 81 69.1
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 2.3e-25 119.8 69 75.4
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 1.1e-24 117.5 69 73.9
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 1.1e-24 117.5 69 73.9
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 2.5e-19 99.8 87 58.6
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 1.2e-16 90.9 51 74.5
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 2.4e-14 83.2 47 72.3
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 2.1e-10 70.1 39 74.4
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 2.3e-09 66.6 37 75.7
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 2.3e-09 66.6 37 75.7
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 2.3e-09 66.6 37 75.7
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 2.3e-09 66.6 37 75.7


User provided reference genes

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